MELO3C012038.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012038.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Locationchr10: 3120510 .. 3123812 (+)
RNA-Seq ExpressionMELO3C012038.jh1
SyntenyMELO3C012038.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGGTTCGTTCAAGTTAAACCAATTTATCCATTATCGAATGCTGTTTACTTCCACTAGTCAATTTGTATTTGCTTTTTCTGGAATATTATAAATGCATCGCTATAATTAGTTTTAAATTGAGAGAAGAAATCAATAATTCGTTGAGGCAAGAATGGAAATTCTAATCTTCGATAATGGTGCTTTCCTAATTTGGTGGGATTGTTCTGCAAATAATATTTGCTTTGAGCTTGTTCTTTACGTAATTGGTTGTTCTATTTATATTGATGAACTTTTTTAATTCCGGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTGAGGAGTTTACGATAAGATTTTCATACTTAACCTCTCCTCTCTCGCTGCAACAATCAGCTCAGGAGTAGCCTGTTTCTACTTATTTTCTTATTTGTTACCCCTAATTTCATTTTCCGTATCAGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGTAAAGACTATAGAATTTTCCTCTATGATATTTTAAAACTGTGTCGCTAAGATCATTGAAAATCACCTTTTGATACTTGGGATGTTTGGTTGGCTTAGTTAATGGAGATTGATGAGCGAAACATGATGGTTTTGGAATTGTATAATCCATATGTCATTTTGTCTCCCCTCATTGTCACATGATCGTGCAAATTTTTAATGATGGAGAAAGCCAACTTCATATGCCATGTATCTCATAAAAAGGGAAATCCTGGACTAGGTGGTAAATGGTTACTTTTTGCTGCCATTACGTAGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCGTGAGTAGTAAATGACCTGTGCACAGAGACCATCACAGAATGTACTACTTGATTGCCGTGCAGTTGTAAATATCTGTAACCATTCGTTTTGAGAAACTATCCTTCCTATTTCTGCAGAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACAGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

mRNA sequence

TAGGCATAATTAAGCAAATTGCACTGCAGCTCGAAGTTGAACCCAAGTGCTCGAGCGCGGGCGGTGGGTTGTCTCCCCTTGGGCTTGAGTCCAGATCCCGGCAAATTAGTTAATTATCGTTGTACTTCGTTGCAATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAGAATAATCAACTGGTACACAGCTTTACAGTGCTTCATTTTTTGGCATTTATTACTCTTATAAATAATATAACTAGCAGACATATAAACTAATTGGGAGTTCAGAGGTCTTTTCTATGCCCACTTACTCTTCTTGTTCGTTGGAACGAGGGTCTGCTACTCGGTAAAGTACAGAGGAATGAGATAAATTTTTCTATTCAATTTGTATTTTTTGAGGTTCTATCAGTTAAATAGGATTTATTTCCTCACTTGGTTACTTATGGGCTTCCTTATTTGGAAGGCGGTAGCCAATTTAATACCTGAAAACTTGGAATTTTGTCAGTCCTAAGAGACTGTAGCTGGTCTGTTGATCTGTTTCTAATAAACTAATCGTCATTGAACTTGAGCTCCCTTGCTCACACTGTGTTTGTGAAGGTGGAATTATTTTCTTTAGAAGT

Coding sequence (CDS)

ATGGAAGCGGGAATTTTCTTCGCCGTCACTCCAATTCCATGGACTTCCAATTTCAAGCGCACTCACTCTTCCCTTCGTCGTTCTTTCCCGCGTATCATAAGGGCTTCTTCTTCCACTTCACAGCGAAGTTACAGGGGCCCGAAGCCTTCAACTGATTTGGTGGCCGATTGGGTGTCCAACAACGATGATACCGTTCGGAGTTCGCCCATTTACGTCGGTGGAATTTCTCTCTTGCTCGTGCTCTTTAATCGCGCCGTTTCCGGCATTGCTCCCGTCGCCGATGCCAGCAGTTCACAGTCAAGAGCTGATCTGTTAACCCTAGGACTTGCTGTTACGAATGTCTTGGCTGGTTTGGTGTGGCTGTCGATCAGGCCGAAATCTATAACACCGGTAAATCCACTAGGAGTAGAATATGAGTGGATTTGCTCCAGTCTCCCTGATCGTGTAACATCTGAGTTGTTATGGGTATGGAAGTCTCTGTCAGAAGTAACATGCTGCCGGTCTCTGGTTGTTGTTTATGATGGCAAGTGTATACTTCAAGTTGGTTTTGCTGCTGAATCAGCCGAGGGTGATGGTGAGGCTGAACGTGTTGAAGCTGGTAAACTGATGCAGGGATTGCTCTATAAGGGAGTCCTCAAATCTCAAGCTCAGAGCTACTTGGCCAATCTCTCTCTTTATCCAGGGAAGTCGGAGCTGCCATTTCTTCCCTCAAATACTCAGGTACTTTGCTTAATACTATCCAGGTCGCTGTTAGATTTGTTCCTTTTTTCTGTTTTCTTATCTTTCTAG

Protein sequence

MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQVLCLILSRSLLDLFLFSVFLSF
Homology
BLAST of MELO3C012038.jh1 vs. NCBI nr
Match: XP_008446278.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis melo] >KAA0034354.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 [Cucumis melo var. makuwa] >TYK15565.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 [Cucumis melo var. makuwa])

HSP 1 Score: 588 bits (1517), Expect = 8.11e-212
Identity = 298/300 (99.33%), Postives = 298/300 (99.33%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN
Sbjct: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300

BLAST of MELO3C012038.jh1 vs. NCBI nr
Match: XP_004135215.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis sativus])

HSP 1 Score: 548 bits (1411), Expect = 1.16e-195
Identity = 279/300 (93.00%), Postives = 285/300 (95.00%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWIS VGEKLDATL KYSNNFQPAAKLSS GN
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSNNFQPAAKLSSKGN 300

BLAST of MELO3C012038.jh1 vs. NCBI nr
Match: XP_038892078.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 526 bits (1354), Expect = 5.64e-187
Identity = 270/300 (90.00%), Postives = 274/300 (91.33%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+SNFKRTH  +RRSFPRIIR SSSTSQ SYRGPKPS D VADWVS 
Sbjct: 1   MEAGIFFPVTPILWSSNFKRTHCPVRRSFPRIIRVSSSTSQGSYRGPKPSRDWVADWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDD VRS PIYVGGISLLLVLFNR VSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDAVRSLPIYVGGISLLLVLFNRTVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSI+PKSITPVNP GV  E ICSSLPD V SELLWVW SLSEVTCCRSLVVVYDGKCI Q
Sbjct: 121 LSIKPKSITPVNPQGVACERICSSLPDIVKSELLWVWTSLSEVTCCRSLVVVYDGKCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEAGKLMQG LY G LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEAGKLMQGSLYTGNLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQP AKLSS GN
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPTAKLSSKGN 300

BLAST of MELO3C012038.jh1 vs. NCBI nr
Match: XP_022984820.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 515 bits (1327), Expect = 7.33e-183
Identity = 265/299 (88.63%), Postives = 273/299 (91.30%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPS D VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSRDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQGLLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNG 299
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPAAKLSS G
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSSRG 299

BLAST of MELO3C012038.jh1 vs. NCBI nr
Match: XP_022956789.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata] >KAG6601389.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515 bits (1327), Expect = 7.33e-183
Identity = 265/299 (88.63%), Postives = 273/299 (91.30%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPSTD VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNG 299
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPAAKLSS G
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSSRG 299

BLAST of MELO3C012038.jh1 vs. ExPASy Swiss-Prot
Match: Q6NQK9 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB4 PE=1 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.1e-103
Identity = 199/288 (69.10%), Postives = 233/288 (80.90%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQAVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKY 286
           NTQAVILQPLG+KGIA++GGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 NTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

BLAST of MELO3C012038.jh1 vs. ExPASy TrEMBL
Match: A0A5A7ST12 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00590 PE=4 SV=1)

HSP 1 Score: 588 bits (1517), Expect = 3.93e-212
Identity = 298/300 (99.33%), Postives = 298/300 (99.33%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN
Sbjct: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300

BLAST of MELO3C012038.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BFC6 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489053 PE=4 SV=1)

HSP 1 Score: 588 bits (1517), Expect = 3.93e-212
Identity = 298/300 (99.33%), Postives = 298/300 (99.33%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN
Sbjct: 1   MEAGIFFTVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ
Sbjct: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAE AEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAELAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN
Sbjct: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300

BLAST of MELO3C012038.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KQF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1)

HSP 1 Score: 548 bits (1411), Expect = 5.63e-196
Identity = 279/300 (93.00%), Postives = 285/300 (95.00%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF +T IPWT NFKRTHSSLR SFP I+RASSSTSQRSYRGPKPST+LVADWVSN
Sbjct: 1   MEAGIFFPLTSIPWTFNFKRTHSSLRPSFPLIVRASSSTSQRSYRGPKPSTNLVADWVSN 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           NDDTVRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW
Sbjct: 61  NDDTVRSLPIYVGGISLLIVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNPLGVE E ICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPLGVENERICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGTCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEG+GEAE VEAGKLMQG LYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGNGEAEHVEAGKLMQGSLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNGN 300
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWIS VGEKLDATL KYSNNFQPAAKLSS GN
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISFVGEKLDATLSKYSNNFQPAAKLSSKGN 300

BLAST of MELO3C012038.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J9M5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482990 PE=4 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 3.55e-183
Identity = 265/299 (88.63%), Postives = 273/299 (91.30%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPS D VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSRDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQGLLYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGLLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNG 299
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPAAKLSS G
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSSRG 299

BLAST of MELO3C012038.jh1 vs. ExPASy TrEMBL
Match: A0A6J1H029 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458387 PE=4 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 3.55e-183
Identity = 265/299 (88.63%), Postives = 273/299 (91.30%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRASSSTSQRSYRGPKPSTDLVADWVSN 60
           MEAGIFF VTPI W+S+ K T   +RRSFPRIIRASS  SQ SYRGPKPSTD VA+WVS 
Sbjct: 1   MEAGIFFPVTPILWSSSLKCTLCPVRRSFPRIIRASSLNSQASYRGPKPSTDWVAEWVSK 60

Query: 61  NDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAGLVW 120
           N+D VRS PIYVGGISLL+VLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVL GLVW
Sbjct: 61  NNDAVRSLPIYVGGISLLVVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLTGLVW 120

Query: 121 LSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKCILQ 180
           LSIRPKSITPVNP GVE E ICSSLPD VTSELLWVWKSLSEVTCCRSLVVVYDG CI Q
Sbjct: 121 LSIRPKSITPVNPQGVECERICSSLPDLVTSELLWVWKSLSEVTCCRSLVVVYDGMCIFQ 180

Query: 181 VGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPSNTQ 240
           VGFAAESAEGDGEAE VEA KLMQG LYKG+LKSQAQSYLANLSLYPGKSELPFLPSNTQ
Sbjct: 181 VGFAAESAEGDGEAEHVEASKLMQGSLYKGILKSQAQSYLANLSLYPGKSELPFLPSNTQ 240

Query: 241 AVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNFQPAAKLSSNG 299
           AVILQPLGEKGIAI+GGNTIRGFTTSDQAWISLVGEKLDATLLKYSNN QPAAKLSS G
Sbjct: 241 AVILQPLGEKGIAIIGGNTIRGFTTSDQAWISLVGEKLDATLLKYSNNLQPAAKLSSRG 299

BLAST of MELO3C012038.jh1 vs. TAIR 10
Match: AT1G59840.1 (cofactor assembly of complex C )

HSP 1 Score: 377.9 bits (969), Expect = 7.7e-105
Identity = 199/288 (69.10%), Postives = 233/288 (80.90%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQAVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKY 286
           NTQAVILQPLG+KGIA++GGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 NTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

BLAST of MELO3C012038.jh1 vs. TAIR 10
Match: AT1G59840.2 (cofactor assembly of complex C )

HSP 1 Score: 377.9 bits (969), Expect = 7.7e-105
Identity = 199/288 (69.10%), Postives = 233/288 (80.90%), Query Frame = 0

Query: 1   MEAGIFFAVTPIPWTSNFKRTHSSLRRSFPRIIRA-SSSTSQ--RSYRGPKPSTDLVADW 60
           MEA I      IPW++N + +H  L   FPR IRA SSSTSQ  ++Y GPKP  +LVAD+
Sbjct: 1   MEARIILLRIQIPWSANRQFSHPPL--DFPRFIRASSSSTSQKPKTYEGPKPRKNLVADF 60

Query: 61  VSNNDDTVRSSPIYVGGISLLLVLFNRAVSGIAPVADASSSQSRADLLTLGLAVTNVLAG 120
           +S NDD VRS PIYVGG SLL VLFNR VSGIAPVADASSSQSRADLL LGLAVTN+L G
Sbjct: 61  ISKNDDLVRSLPIYVGGASLLAVLFNRTVSGIAPVADASSSQSRADLLALGLAVTNLLTG 120

Query: 121 LVWLSIRPKSITPVNPLGVEYEWICSSLPDRVTSELLWVWKSLSEVTCCRSLVVVYDGKC 180
           LVWLSIRPKSITPVNP GVE + + S LP  + SELLW W+SL   TCC+SLV+VY+G C
Sbjct: 121 LVWLSIRPKSITPVNPKGVECKVVESDLPASMVSELLWAWESLKVATCCKSLVIVYNGIC 180

Query: 181 ILQVGFAAESAEGDGEAERVEAGKLMQGLLYKGVLKSQAQSYLANLSLYPGKSELPFLPS 240
           ++Q+G  AES E D +   V+  KLMQG +Y+GV+KS+AQSYLANLSLYPG+SELPFLP+
Sbjct: 181 LIQIGMVAESPE-DKKTVIVKTDKLMQGSVYRGVMKSKAQSYLANLSLYPGRSELPFLPA 240

Query: 241 NTQAVILQPLGEKGIAIVGGNTIRGFTTSDQAWISLVGEKLDATLLKY 286
           NTQAVILQPLG+KGIA++GGNTIRGFT+SDQAWIS +GEKLDATL +Y
Sbjct: 241 NTQAVILQPLGDKGIAVIGGNTIRGFTSSDQAWISSIGEKLDATLGRY 285

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008446278.18.11e-21299.33PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic ... [more]
XP_004135215.11.16e-19593.00protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucumis sa... [more]
XP_038892078.15.64e-18790.00protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 ... [more]
XP_022984820.17.33e-18388.63protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ... [more]
XP_022956789.17.33e-18388.63protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita ... [more]
Match NameE-valueIdentityDescription
Q6NQK91.1e-10369.10Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A5A7ST123.93e-21299.33Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4 OS=Cucumis melo var. makuw... [more]
A0A1S3BFC63.93e-21299.33protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucumis ... [more]
A0A0A0KQF15.63e-19693.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603980 PE=4 SV=1[more]
A0A6J1J9M53.55e-18388.63protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit... [more]
A0A6J1H0293.55e-18388.63protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT1G59840.17.7e-10569.10cofactor assembly of complex C [more]
AT1G59840.27.7e-10569.10cofactor assembly of complex C [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152CCB2_CCB4coord: 69..244
e-value: 9.9E-42
score: 142.5
IPR044705COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4PANTHERPTHR34943FAMILY NOT NAMEDcoord: 1..244

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012038.jh1.t2MELO3C012038.jh1.t2mRNA
MELO3C012038.jh1.t1MELO3C012038.jh1.t1mRNA