MELO3C004707.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C004707.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr01: 27130316 .. 27130933 (-)
Sequence length	525
RNA-Seq Expression	MELO3C004707.1
Synteny	MELO3C004707.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCACACTCCTGGCATGCTCCCTGACACGTTTTCCGAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGAGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCCGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGG

mRNA sequence

ACCCACACTCCTGGCATGCTCCCTGACACGTTTTCCGAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGCGAAGGAAACGAGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCCGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGG

Coding sequence (CDS)

ATGCTCCCTGACACGTTTTCCGAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGCGAAGGAAACGAGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCCGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGG

Protein sequence

MLPDTFSEGIGREASSLEGELCEGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGLSSRTSGARPKKTRARMPRTQFSRPG

Homology

[Close]

BLAST of MELO3C004707.1 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 4.6e-64
Identity = 142/219 (64.84%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1    MLPDTFSEGIGREASSLEGELCEGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTV 60
            M+ DTF  GIG EAS LEGELCE N LSS+ S ARP KTRARMPRTQFSRPG KSGPPTV
Sbjct: 1329 MVSDTFFGGIGWEASWLEGELCEVNGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTV 1388

Query: 61   SSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGG------------------------ 120
            SSLCSVLVISLSIFG+R  RTSTHT GMLPDTFSG                         
Sbjct: 1389 SSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQEN 1448

Query: 121  -------------------------IGREASSLEGELWCDPKRSKRWPMLPTSGERSSGV 171
                                     + REASSLE ELWCD KRSKRWPM PT+GERSSGV
Sbjct: 1449 ANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGV 1508

[Close]

BLAST of MELO3C004707.1 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 121/189 (64.02%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 23  EGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTS 82
           EGN LSSRTSGARPKKTRARMP+TQFSRPG KS PPTVS+LCSVLV SLSIFG+  PRTS
Sbjct: 278 EGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTS 337

Query: 83  THTP------------------------------------------------------GM 142
           THTP                                                      GM
Sbjct: 338 THTPGMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGM 397

Query: 143 LPDTFSGGIGREASSLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGLSSR 158
           LPDTFSGGIGREASSLEGEL CDPK SKRWPMLPT GERSSG RNHWKCTCSEGNGLSSR
Sbjct: 398 LPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSR 457

[Close]

BLAST of MELO3C004707.1 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 114/169 (67.46%), Postives = 123/169 (72.78%), Query Frame = 0


Query: 1   MLPDTFSEGIGREASSLEGELCEGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTV 60
           MLP+TFS+GIGREAS LEGEL + N LSSR SG RPKK  +            K+   TV
Sbjct: 380 MLPNTFSQGIGREASLLEGELSKRNRLSSRNSGVRPKKMDSVFSSWS------KTWSQTV 439

Query: 61  SSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPM 120
           SSL  +LVISL IFG+  PRTSTHT  MLPD FS GIGREASSLEGEL CDPK  KRWPM
Sbjct: 440 SSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPM 499

Query: 121 LPTSGERSSGVRNHWKCTCSEGNGLSSRTSGARPKKTRARMPRTQFSRP 170
           L TSGE SSGVRN+WK TCSE N L SRTS   PKKT ARMP+TQF RP
Sbjct: 500 LQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQFPRP 542

[Close]

BLAST of MELO3C004707.1 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.5e-40
Identity = 93/127 (73.23%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 43  MPRTQFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREAS 102
           MPRTQFSR   K  P       +VLVISLSIF +R  RTSTHT GMLP  F+ GIGREAS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 103 SLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGLSSRTSGARPKKTRARMP 162
           SLEGELW DPKR KRWPML TSGER SGVRNHWKCTCS  N LSSRTSG  P KTR RM 
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMS 120

Query: 163 RTQFSRP 170
           RTQFSRP
Sbjct: 121 RTQFSRP 127

[Close]

BLAST of MELO3C004707.1 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-39
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 86  PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGL 145
           PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWP LPTSGERSSGVRNHWKCTCSEGNGL
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236

Query: 146 SSRTSGARPKKTRARMPRTQFSRPG 171
           SSRTSGARPKKT A MPRTQFSRPG
Sbjct: 237 SSRTSGARPKKTPAGMPRTQFSRPG 261

[Close]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 142/219 (64.84%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1    MLPDTFSEGIGREASSLEGELCEGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTV 60
            M+ DTF  GIG EAS LEGELCE N LSS+ S ARP KTRARMPRTQFSRPG KSGPPTV
Sbjct: 1329 MVSDTFFGGIGWEASWLEGELCEVNGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTV 1388

Query: 61   SSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGG------------------------ 120
            SSLCSVLVISLSIFG+R  RTSTHT GMLPDTFSG                         
Sbjct: 1389 SSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQEN 1448

Query: 121  -------------------------IGREASSLEGELWCDPKRSKRWPMLPTSGERSSGV 171
                                     + REASSLE ELWCD KRSKRWPM PT+GERSSGV
Sbjct: 1449 ANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGV 1508

[Close]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 121/189 (64.02%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 23  EGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTS 82
           EGN LSSRTSGARPKKTRARMP+TQFSRPG KS PPTVS+LCSVLV SLSIFG+  PRTS
Sbjct: 278 EGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTS 337

Query: 83  THTP------------------------------------------------------GM 142
           THTP                                                      GM
Sbjct: 338 THTPGMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGM 397

Query: 143 LPDTFSGGIGREASSLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGLSSR 158
           LPDTFSGGIGREASSLEGEL CDPK SKRWPMLPT GERSSG RNHWKCTCSEGNGLSSR
Sbjct: 398 LPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSR 457

[Close]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.5e-48
Identity = 114/169 (67.46%), Postives = 123/169 (72.78%), Query Frame = 0


Query: 1   MLPDTFSEGIGREASSLEGELCEGNELSSRTSGARPKKTRARMPRTQFSRPGVKSGPPTV 60
           MLP+TFS+GIGREAS LEGEL + N LSSR SG RPKK  +            K+   TV
Sbjct: 380 MLPNTFSQGIGREASLLEGELSKRNRLSSRNSGVRPKKMDSVFSSWS------KTWSQTV 439

Query: 61  SSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPM 120
           SSL  +LVISL IFG+  PRTSTHT  MLPD FS GIGREASSLEGEL CDPK  KRWPM
Sbjct: 440 SSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPM 499

Query: 121 LPTSGERSSGVRNHWKCTCSEGNGLSSRTSGARPKKTRARMPRTQFSRP 170
           L TSGE SSGVRN+WK TCSE N L SRTS   PKKT ARMP+TQF RP
Sbjct: 500 LQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQFPRP 542

[Close]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.7e-40
Identity = 93/127 (73.23%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 43  MPRTQFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREAS 102
           MPRTQFSR   K  P       +VLVISLSIF +R  RTSTHT GMLP  F+ GIGREAS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 103 SLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGLSSRTSGARPKKTRARMP 162
           SLEGELW DPKR KRWPML TSGER SGVRNHWKCTCS  N LSSRTSG  P KTR RM 
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMS 120

Query: 163 RTQFSRP 170
           RTQFSRP
Sbjct: 121 RTQFSRP 127

[Close]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.5e-40
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 86  PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPMLPTSGERSSGVRNHWKCTCSEGNGL 145
           PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWP LPTSGERSSGVRNHWKCTCSEGNGL
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236

Query: 146 SSRTSGARPKKTRARMPRTQFSRPG 171
           SSRTSGARPKKT A MPRTQFSRPG
Sbjct: 237 SSRTSGARPKKTPAGMPRTQFSRPG 261

The following BLAST results are available for this feature:

BLAST of MELO3C004707.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	4.6e-64	64.84	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK22521.1	4.8e-53	64.02	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
TYK23424.1	1.3e-47	67.46	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061317.1	3.5e-40	73.23	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0066117.1	1.3e-39	96.47	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]

BLAST of MELO3C004707.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	2.2e-64	64.84	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DFP2	2.3e-53	64.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DIF8	6.5e-48	67.46	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7V368	1.7e-40	73.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGB1	6.5e-40	96.47	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]

BLAST of MELO3C004707.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C004707	MELO3C004707	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004707.1:exon:29178	MELO3C004707.1:exon:29178	exon
MELO3C004707.1:exon:29177	MELO3C004707.1:exon:29177	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004707.1:cds	MELO3C004707.1:cds	CDS
MELO3C004707.1:cds	MELO3C004707.1:cds_2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004707.1:five_prime_utr	MELO3C004707.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C004707.1	MELO3C004707.1-protein	polypeptide