MELO.jh102145.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102145.1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 10007073 .. 10017085 (-)
Sequence length	1740
RNA-Seq Expression	MELO.jh102145.1.t1
Synteny	MELO.jh102145.1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTAAGTCAACGGATGTCGCTTCCGACCTTTTTAAACGACTTCTACTAAAGTCATCAACTAAAATTTTCGTGTTTCGTTAGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAAGGGTTTTCCTACTACTGGACCTGAGTCCAGGCTGAAAACGTAGTAATCCACAGGGGATTACACGTTATTGACTGTACTGAATAACTGTATGCGTGTTGACTGTTAAGTACTGTTATTATATTTGTCTGATGTAAATATACTGTGACTGCGAGTTGTGGATTGAGATTTTATGTTGATGGACCTTGAAGTTACGGTTCAGTATGTAGTAAAACACTGGTCTGGATATGGTTCATGGAATTTGGACGGGGATGGACAGTGAGTCCGGTTTTGGTTGGTTAGTCGATTGGACCTAGGGTTTTCCCTATTGGTGTGCGAATCGGTAATGCATATAGCAACTGAGGGTGTAGATGTTTAAACCTATACTATCTGACTGACAAAGCCTATGGCGGGACTGTGATATGAATGCCGTTGGGATGTGACTGATGTAGACAGTTTAGTTTGGACTGAGGGGTAACGGTTAGCTTCATCTATGGGGTAGTGTGCCTTACGGATATGTGCGTCCTTCGGGAGCACTAGACTGATATGTGCGTCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCGTCCTTCGGGAGCACTAGGCGATATGTGCGTCCTTCGGAGCACTAGACGATATGTGCATCCTTCGGGAGCACTAGATCGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGATATGTGCATCCTTCGGGAGCACTAGACTGTTATGTAGGGTACCCCCGAATAGGAAGTTAACTGTTGTCCCCTAACGGGCCTAGTAGTGGGTCCCTTACTGGGTATGTTTATACTCACCCTTTCTCTTCTTTAACTTTTCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGGTTTTCTTATCGCTTCCGCTATGTATTTTGTCAGAATATTTTGACTTGTGATTTTGAACTGGTGACTTGATATTTTATTTTGTGACTTTTTGATTATTTAAAATAGGGCCCGAAACTGTCTTTTGTAAGATTTTTAATGTTTTAATGAATCGTAACTGGTCCGTTTTAAATTTTATGTTGAATGGTCGAGTTTTGGTGTTTGGTAGTGACCTCAGCTTAGTCCGGAAAGTTGGGTCGTTACAATTAGACTTGAACATGGATTTTGTATGTTTGTATTATGGGTTGGAAAAATTACATAAATTTTCTTTTCTTCCATCTTCGTCTGTTTCTTTTCTTCTTTTTTCTTTTCAAACTGTTATTTGGTTCATTGTGTATTATTTAGATTGGAGTAGCCAAATAAACGATAGTGTAAAAAAAGTAAAGGATAGTGTAAAAAAAATTATCATGTAGACAAATCTAAAGGATCGTGTACCAAAAGAATTAAAAAATAAATCTAAACAATCGTGTACCATATTCTAAGTAAAATCTAAATGATCGTGTACCAAATTTTGAAAAAAAATCGTTTAGCCAAATATAAATGATTGTGTACCAGATTTTGAGTCAAATCTAAATGCTCGTGTACCATATTTTGAGCCAAATCTAAACGATCGTGTACCATATTTTAAAAAACAAAATCGTTTAGCCAAATCTAAATGATTGTTTACCATATTTTGAAAAAAAAATCGCTCAGCCAAATATAAACGATCATGTACCAAATTTTGACGTAAATCTAAATGATCGCGTACCAAATTTTGAGCCAAATCTAAACAATAGGGTACCAAATTTTGAGCCAAATCTAAACGATCGTGTACCATATTTTGAGTCAAATCTAAAAAATTGAAAAAAAAATTGTTTTATAACATTTGAAGGATAAATACAATTTTTTGTTTATGTTATTCTTTTTATTTGTGCAGTAGAACTTCTTCGTATTAAGTGATATAAAGTACTTTTTGATAATTTTCATTTTTATGTTTACAGGACATAAATTTTTATTAAATGTTTAATTGTATTCTCTTCCATCTGTTCAGATTGTATGTTTTTTATATAGCTTCTAGTACATACTAGTAGTAGATTTTATGTAGCTTCCAATACCTTGAATCACAGAGTTTGACTGCTTAGACTTTTCTATGATTTTAGTCAGTTCTACCAGAGATTCCTTGTCTTTTTGTCATTGATTTTTATTGATGTATACCTGTTGTGTATTACTTCACATAATATTTTTTTTTGTTTCCCTTCATTAAAGGCCATCTAACTTTCCCCATCTTCCTCTATATATACACTATGTTTCCTCCTTTCATTTATGACTTTCACTTCTCTATCACTGCATTCTTATCTCTATTTATATCTTCTCCTTTGTAAGTGCCTTTTTTGTTCTCATTCTCTTTTCAATCTGCCTTGTTTTTCAAATTAATTCATTCCCCTGTTCTATTCATGTGCTTCTGCAATTATCTTCTGTCCTCCTTTCTCACTTATGAACTGTTTTGTATGTCTTTATATTCATCTATTGTATTGATGTTTACATTATATTTAACATGACATGTATTCCATAGTAAATAGGGATATTTACCAAATTAGTAAGTATAGGGTTTTAGTAAGTTCATAATAAGCTTTAATTAGAGATTTCAGATAATGTATATCGATATTGTACTAATTCACTTAGTACATATTTTATAGGAAAGTTACATACTTTGTAATGGATCAACAAACTCTTCTTGCCATCTTAACCGCGTTCACGTCGGCCCAACATCAGATGTTACTAAAATTTCAAGCTACTAATGAACGACAGTAGGCGTATCATGCATACACCGTCCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTGTCGCCAAAGCACGCGCATGGACAGGCAAACATTCGCAATTCTATGACATTTACTTCGGGCTGTTTCTGGTCTTTCGTCGATCGAGATTGTTGATGTTGAGGAAATGATAGCAATGTTCTTGGACGTCCTTGCCCATGATGTGAAGAATCACATCATTCAAAGGGAATTTGTAAGGTCCGATGAGACAGTATCTTAGCATTTTAATCTCGTACTGTTGGCTGTAGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGGTACAAGTTTAATGTATTTGAGCTTTAGGCACGTGGCACTTATTTCAACGTGTTTATTTAAACCTACAGAATTGCCTTGGCGTGTTAGACGAGACGTACATAAAGGTGAACGTCTCCACAACAGATCGGCCTACATTTTGAACCCGTAAGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTATTGTTTATTTATAATCAAACAACGCCAATTTTTACTTACATATTCAAAGCGCATAAACGAATGGTTTTAATAACAGGATATTATTATCTATGCAATACAGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAGATAAGAAAATTTTAGATTAGAAGTCATCGGTTGTATGCACATTTTATTGACCTGTAAAATGTATTTTTGCATATGAAATGTACGTGTGTCATTTGTTTGTGACTGTTAAATGTGAAATTATGATATTACTAACATACTCCATATATTTCTTGTAATTTGTCATTCTCAGTATGTCAACCTCAACCCGTGCCCCAAGGCATGTCTGGACGAAGGAGGAGGAGGGTATTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCTGATAATGGTACGTTCTGACCAGGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGGTAAGGAAAATAATATAAACGTCACATAACGTTCGCAATGTACATTTACTTCAAAAATTTTCTATCAGTACTCATATGTGATCCTTTTTTTCCCCGCAGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTAGAAACGGATCGAGTGGATCCTAGAGGAAGAGAGAAAGTCAGCGAAAGGTGGATGTTAAAGGCATACATCTGGCACTCGACTAAACAAACGAGCAACTCAAGATGATTGCGGAGTAGCCTACACACACCCTTGCCAATGACAACCATGTTCGCACGGAATTCTTTCGCATATTGCGTGAGATGTTGGAATTAACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACGACCTTAGGGGTTTCATACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACAAGACATGACGAGATAGTTTACGTTTGTACTGACCTGGGTAACTTCTTATTTGCTTACTTTTTTTCTGTATGATATTGACTGTTTATGTTTTTGCTATTGTAGACAACTATTTTTTCGTTCATAATGTTTATTTAAAATTAATAAAAATAGTAACAATTTCACTCAGGCGTTATACCAGGTAATTACATATGTTCAAAATAGGTGGACATCGCCAATTACAAATAGGAAATAATATATTTTTCTTTCTAAAAAATGAATTTTAATAAATTTTTCACAATATGTTTAGAAATTAATTCCAAATTGAACAATTGTCTTTACTAATTTAATAACATTACACATACAATAAATTTGTTTGCAATAAGACAGGTTCGACGCTTTTGTAAAAAAGTATTCAATAAGAATTTTTTTATCATATTTACAATCTCATTTAAAAAATATTTTACTACATAAAAAAAATTATTAACCCAACTCATATAACACTTTCCCCAAATAAATTTTATCATAAATTTCACATAAACCTACCTACCTAACCCTTCCCCCAAAAACATCTTATCATAAATTTTCCATAAAACTACCCACCTAACCCTTCCCCCAAACACATCTTATCATAAAATCCTCATAACCCTTCCCCCAAACACCTCTTATCATAAAACTAGATTTCTAAACTCTTCCCTCAAACAAGGATTATGATAAAACTAGGTTTATCATAACACTAGTTTTATCATAACACTAACCCTTCCATAAATCAACTCTTCCCCCAAACGCACCCTAAGGTTTTATCCTCAGCTTACTTTGATTTGAGAATAAAAAATTTGATGATTTTTTTTTGATAAAATTTGGAACCGGTTTTTTAATTTAAGACAAAGATGAGGTTTCTAGCATACCCTAATTTGTTCTTAGATGTACAAGAATTTGGAATGACCAATTTTAATTTTGAGATAAAATGATCAAATTTAATTTTGAGATAAATATGAGATCTCAATCTTAGAATAAAGTTAGATTTATGACTCCATTTTAAATTTGAGATAAAAAAGGGGGTAAAATCTAAATTTTAATTTTAAATATGCTTAATTCTCACAAAGTGGAATTCAAGATTTTATTCCAAAATAAAATAACATAAGATAATAGAATTTTAATTTTATTTAAAAATATTAAAATATGTTTAAATATCTCAAAGGTGAAATCCGAGATTTTATTCCAAAATAAAATAACATAAGATAATTGAATTTTAATTTTATTTAAAAAATTAAACTGTTAAAATATGTTTAAATATCTTAAAAGTGAAATTCGAGATTTTATTTCAAGATAAAATAACATAAGATAAGGGATCTTTTCAAAAATATAAAAAAGCGGCAAAATATTTACACTCTATAGAACAATTCCAAAAATGGAAAAAGCCCAGAGGCCCACTGTGTAAAATACCAAAAATGCCCCGTCAACCACGACGTTAATAACACGCGCATAATATATTTGTGATTTATACGAAATCGCTTAGATATGGTTCAATATATACGTGATCGTTTAGATATGGCTATAATTTATACGTGATCGTTTAGATATGGCTACAACGCGATCGTTTAGACATGGCTACAATATATACGCGATCGTTTAGATATGGCTATAATTTATAGACGATCAATTAGATATGACTACAACGCGATCATTTAGATATGACTACAATTTATACGCGATCATATAGATATGGCTACAATTTATACGCTATCGTTTAGATATGGCGACAATTTATCTTTTCAATTCCATCATTTAATTTTGTTACACGATCGTTTAGATTTAGGGACCCAAATCTAAATGATTTTTTTAAAATTTGGTACACGATTTTTTTAATTCTTTTGCTAGACGATCGTTTAGATTTCTTTACACGATCGTTTACTTTTTTTACATGATCGTTTACTGTTTTTTTCACGATCGTTTACATTTGGCTACTCCAATTCAAATGAATTTTTTTTCAAAATTTTTTATACACACGATTGTTTACTTTTTTTAAACGATTGTTTACATTTGGCTACTTCAATCTAAATGATTTTTTTTCAAGATTCTTTATACAAAATCTTTTATTTTTTTTACACAATCATTTTCTTTTTTTTTTACACGATCGTTTACATTTGGCTACTCCAATCTAAATGATTTTTCTTCAAGATTCTTTATACACGATCTTTTAGGTTTTGCTATTTTTTTGTACACAGTCTTATACATATTAGATTTTGTTGTACACAGTCTTATACAAAGTCGTTTAGATTTAGTTACCTCAATGAAAACGCGTAACAAAAGAAAAGAAGAAAGACGATGGAAAGAAATCGAAGTAAAAAAAAAAAGGAAAAGAAGAAAAACGATGGAAAGATTAAATGACGTAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCATAAAAGAAAAAGAGGAAAGAAGAAAGACGAAATCGCAGAGGAAGAACGAAGAAGACGAAATAGAGGAGAAAGACGAATCGCGAGGAAGAAAGAAAGATGTAAAGGAAAATCTGGAATATTTAAAAAATGGCTAACTTTATGGGCTTTGTTACACGAGCCGTAAATAGTTTGGTGTTTTATTACATTTACAATAGTTTCCCATAAGATAATTCAATTTTAATTTTATTTTATTATTTAATCATTACAAATCCTCTTAGGAATTGGATTTGTTAACCTTATAAATAGACTCATACCTTGATCATTCTTTCCTCATCAAGCAGAACAAAGGAATGAGAGAAAAAACTTCTCTCCTCCCTCTCTTTTTTTCTTTAATTCTTCTTTTTTTATCTTCAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGGTTAAGTCCCTTTTTTTTTTTTGCAAGCCTTTGAAGGTCCCATGCAAGTATATATGAGGTTACAGACTCCTCAACATCCTACTTCTTTCAACGTCAACTTCTGAGGTTTATTCAGGATAGACGATGCAACTCTATCATGATGCCCTCTTATTTCTTAGGGTTTGTTCATGATAGACGATGCAACACTATCATGACGCCCTCCTCCGTCCAATTTGCTTTCATATATTCTTTGTTCTAAGACCATGTCATCAGCACTAACTTGCTTCTGGTGATCTTATTTTGCAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGTCTTCTATCCATAACGAGGCTCCTAATTCTGACAGAGTTCTCACTCTTGAATAACGTTAATTGAAGGCCAAACACGTTGGGGTGTTGTGACTAAGGTCCCCTTTTTTTATGAGATGACAATGAAACATGATTTTTCTTTATTTGTGATTGAACTTAAAGTGAACTTTAAGCTGTCGTACCCTTTTTATAACATAGGAATTAAGTCATAACATAGTTCAATTGATTTTTTTTTACTGTATAATGACGTTAAACATAAAATTTCTTGAGAAACTTGTCGTTGATTGGGCCAATTTTTAATCCACCTCAATCAACAATCTTGTATACGCCATTTGTGTAAACTTCTTTGACAATGTAAGGTCCATCCCATTTAGGTGTGAACTTATTTTTTCACACCCTCTTCCGAACTACCTGCTACCTTAGACCGAAAGATGGCATGAAGCCGACGAACAACGCTTTTCTGTACCTATATCTGTCAACTCTGCTTAAAACTTTCATGTGATGAACTTGCCAATCTAGTATATAAACTATTATACATGCAACAAAACACAGCGGATCCTAGGCTAGTCAAACACATACATGAAGTGTACCTCAAAATTTACTGATTTCACGAGTAAACCTAAAGACACCTTAATCAAAATATAACCAACAAAAATTTACACAACTACAGCTCCTAAAGCTTATACAAACTGTGGAGTATCTATAACATACAAGGGTGTATATACATCATAACACAACAGACTCTATGCCCAACTCAAAACACATACTGGCAATCGATAACGGAGCTTCAGCAGACTAAAACAGTCTATCAGGCACCGGAAACTCGATCTCTACCTGGAAAATGGGTAAAACATTTTGGAAAGAGTGAGCTATGAAGCTTAGTGAGTGACTTAGTTTAAAACTATGAATTAAAGATAAGAGCAAGTGAATACTTTACACATATAAATCTGTTTATATAAGTCGTAAAAGTAAACGTGTAGTAGTAAGAATAGCTTCCTCAAATACTCAGCATGTTCGTCACTGAAATCTAGCAAGGCATATCAAGTATATCGAAGCATTTTAACTAACATGACAAATCTACGTTGTGTAGGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

mRNA sequence

ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

Coding sequence (CDS)

ATGGCCCTACTTTTCTCCCTTGAAGGTAGTACAGAGTTGACGCTTAAGTTCTCGGGTTCCGCGGCAGGCCTGGTTGGAGATAGCTTCCTTTCCTTGGGTGGATCTGTCGAGCGTGGATTTCGATCGAGGGGCATAACCGAGTATCAGGTAGGGGTACAGCGAGGGGCAGACCGACGAGAGGCAGGAAGGATGCGTGAAGGCCATATGGACGCGTCTGTTCGACTATACGACGAGTTGATAAAGAGACCTGTTCTAGTAACAAACAACTGCAATGATCAACGTTTGAAGTGTTTCGAGGTGGGCATGAGAAAAATTTCCACAAACGTATTGGGCGTCTGCACCACGAAAGGGGATTTCGTTTATGTCATCGCCGGTTGGGAAGGATCCGCGACAGACTCGTGGATTCTACATGATGCCATTGCACGAGAAAATGGACTACAAGTGTCAAAGGGTTATCCAAACACGGAGGGATTTCTTGGCCCGTACAGCGACCAGCGGTACCACTCGCAAGAGTGGCGTGGTGCTGGAAATGCACCAACAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAACTGTCGTTGGGCCATTCTTCGTGGAAAGTCATACTATCCCCTGCAAGTCCAGTGTCGCACCATACTAGCATGTTGCTTTCTTCACAATTTGATAAACGGAGAAATGACATATTACGACGACGTTGATAACGTGGACGAGGGGGACTCCACGTACGCAACGACCATCGCTACAGAAGACATACACTACATTAAGACGACATACGAGTGGTCTCAGTGGCACGACGAACTAACTGAATCGATGTTCACAGATTGGCAGTTGCGTTACCTAGCCCAGTTGGTACGCATGATGACAGAGAAACTACCTGGATGTCGTGTCTGCGAAATGACTATAATTGACTGTAGAATAAAGAAACTGAAGCAGACATTCCATGCCACCGCTGACATGCGAGGGCCAGCGTGCAGTGGCTTCGGGTGGAATGATGAAGAGAAATGCATAATTGTGGAGAAAGAATTATTTGATAAATGGGTTAGGTTGCATCTTGCAGCGAAAGGACTCCTGAACAAACCGTTTCCATATTACGACGAACGTACATATGTGTTCGATCGCAAAAGGACGACGGGTCGATTCGCTGAGACATTTGTCAACGTGGGATCTAACAAGTCTGGTGGGTACGAGGGATTTGACATGGCGGATGGAAACGAGGAGTTCCCGCCCATGTACAGCCAAGGGATTGACATGTCGCAGGATGATGTACGCGCATCACGACCTTTTCGTGCTTCAGAAGGTTTAGTAGTTGGTAATTTGTTGCACCAACTTGAAGTTCTATCAAAGAAAATGGTTTACTTCACAGAACAATTCTTGTCTAGATTCTTGTCTAGAGTCCGACACCTCGTAGTATTTTTTGATAGAAATCAACCAAGAGAAGATGAACTTAGTCTCCTTGTGGAGAAGCCATGGGCTGCCTCTTTTGCAGATCATTGGCCACACTTAGACAACAACTCAATTTATCTCAGGGAAAAACTGCATGAGTCCTACAGGTACACCCAGTACAACAACGTTTACAAGCTCTACGATGTAGTGGGGTCCGTCCAGCACTCCCATCGTCTTTGTCGTAGTGGGACCCGCCCAGCACTCACGACAGCATTGTTGTTACGGAGTACACTCAACGTCAACAACGGAATTTAA

Protein sequence

MALLFSLEGSTELTLKFSGSAAGLVGDSFLSLGGSVERGFRSRGITEYQVGVQRGADRREAGRMREGHMDASVRLYDELIKRPVLVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLRYLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEGLVVGNLLHQLEVLSKKMVYFTEQFLSRFLSRVRHLVVFFDRNQPREDELSLLVEKPWAASFADHWPHLDNNSIYLREKLHESYRYTQYNNVYKLYDVVGSVQHSHRLCRSGTRPALTTALLLRSTLNVNNGI

Homology

[Close]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 570 bits (1469), Expect = 6.69e-195
Identity = 292/435 (67.13%), Postives = 319/435 (73.33%), Query Frame = 0


Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE----------------VGMR--------KIS 130
           A +RLY+ELIKRPV VT+NCNDQR KCFE                 G R        +I+
Sbjct: 82  AVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 141

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC  KGDFVYV+AGWEGSA DS IL DAI++ENGLQV KGY        PN EGF
Sbjct: 142 TNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGF 201

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRGA NAPTNAKEYFNMKHSS RNVIERAFGVL  RW ILRGKSYYP
Sbjct: 202 LAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYP 261

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           LQVQCRTILAC  LHNLIN EMTY +DV++ DEGDSTYATT A+EDI YI+TT EWSQW 
Sbjct: 262 LQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWR 321

Query: 311 DELTESMFTDWQLR-------------------------YLAQLVRMMTEKLPGCRVCEM 370
           D+L  SMFTDWQ R                         YLAQLVRMM EKL GC+V   
Sbjct: 322 DDLATSMFTDWQFRGGDSCGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRAT 381

Query: 371 TIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNK 430
           T+IDCRIK LK+TF A A+M GPACSGFGWNDEEKCI+ EKELFD WVR   AAKGLLN 
Sbjct: 382 TVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNN 441

Query: 431 PFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEGFDMADGNEEFPPMYSQGIDMS 447
           PFPYYDE TYVF R R TGRFAETF +VGSN+  GGY+ FDM DGNE+FPP+YS+G+D+ 
Sbjct: 442 PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDIL 501

[Close]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: TYK03086.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 528 bits (1360), Expect = 1.41e-180
Identity = 259/348 (74.43%), Postives = 281/348 (80.75%), Query Frame = 0


Query: 107 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQR 166
           +NVLGVC TKGDFVYV+A WE SA DS IL DA++RENGLQVSKGY NTEGFL PY  QR
Sbjct: 23  SNVLGVCDTKGDFVYVLANWEESAADSQILRDALSRENGLQVSKGYQNTEGFLAPYRGQR 82

Query: 167 YHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTI 226
           YH Q+W G GNAPTNAKEYFNM HSS RNVIERAF VL  RW IL GKSYYPLQVQC TI
Sbjct: 83  YHLQKWHGGGNAPTNAKEYFNMSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTI 142

Query: 227 LACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMF 286
           LACC LHNLIN EMTY DDVD VDEGDS YATT A+EDI YI+TT EWSQW DEL ESMF
Sbjct: 143 LACCLLHNLINREMTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMF 202

Query: 287 TDWQLR-------YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACS 346
           T+WQL        YL QLV MM EKLP C+V   T+ID RIK LK+ F A A+MRGPA S
Sbjct: 203 TNWQLYNGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIKTLKRIFQAIAEMRGPAYS 262

Query: 347 GFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFV 406
           GFGWN+EEKCII EKELFD WVR H AAKGLLNK FPYY+E TYVF R RTTGRFAETF 
Sbjct: 263 GFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNELTYVFSRDRTTGRFAETFA 322

Query: 407 NVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEG 447
           ++GSN+ G Y+ FDM DGN+EF P+YSQG+D+SQDDVRASRP RASEG
Sbjct: 323 DLGSNEPGRYDRFDMGDGNKEFLPVYSQGMDLSQDDVRASRPSRASEG 370

[Close]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: KAA0064030.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26181.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1175), Expect = 2.40e-152
Identity = 240/377 (63.66%), Postives = 261/377 (69.23%), Query Frame = 0


Query: 73  VRLYDELIKRPV----------LVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYV 132
           VRLY+ELIKRPV           +  N        F     +I+TNVLGVC TKGDFVYV
Sbjct: 41  VRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNVLGVCDTKGDFVYV 100

Query: 133 IAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRG 192
           +A WEGSA DS IL D ++RENGLQV  GY        PN EGFL  Y DQRYH QEWRG
Sbjct: 101 LASWEGSAADSRILRDVLSRENGLQVPNGYYYLCDAGYPNAEGFLALYRDQRYHLQEWRG 160

Query: 193 AGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHN 252
           A NAPTN KEYFNMKHS  RNVIE AFGVL  RWAILRGKS                   
Sbjct: 161 AANAPTNPKEYFNMKHSLARNVIECAFGVLKGRWAILRGKS------------------- 220

Query: 253 LINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR-- 312
               EMTY +DVD+VDEG STYATT A+EDIHYI+TT EWSQW DEL +SMFTD QL   
Sbjct: 221 ----EMTYCEDVDDVDEGGSTYATTTASEDIHYIETTNEWSQWRDELAKSMFTDSQLHNG 280

Query: 313 -----YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEE 372
                YLAQLVRMM EKLPGC+V   T+IDCRIK LK  F   A+MRGPACSGFGWNDEE
Sbjct: 281 TFRPGYLAQLVRMMAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEE 340

Query: 373 KCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSG 424
           KCII EKELFD WVR H AAKGL+NKPFPYY+E TYVF   R T RFAETF +VGSN+ G
Sbjct: 341 KCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFADVGSNEPG 394

[Close]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 434 bits (1116), Expect = 3.07e-141
Identity = 235/445 (52.81%), Postives = 282/445 (63.37%), Query Frame = 0


Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE------------------------VGMRKIS 130
           A +RL++EL+K+P  V N C DQR + FE                            +++
Sbjct: 110 AVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVA 169

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC TKGDFVYV+AGWEGSA DS IL DA++R N L+V KGY        PN EGF
Sbjct: 170 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGF 229

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRG  NAP+ +KE+FNMKH S RNVIERAFGVL  RWAILRGKSYYP
Sbjct: 230 LAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYP 289

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           ++VQCRTILACC LHNLIN EMT +D  DN+DE DST+ATT A +DIHYI+T+ EWSQW 
Sbjct: 290 VEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWR 349

Query: 311 DELTESMFTD-----------------------------WQLR-------YLAQLVRMMT 370
           D L E + T                              W+         YL QL RMM 
Sbjct: 350 DNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMA 409

Query: 371 EKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVR 430
            K+PG  +   TI D RIK +K+ FHA A+MRGP CSGFGWNDE+KCI+ EKE+FD W  
Sbjct: 410 FKIPGSNIHASTI-DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS- 469

Query: 431 LHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYE-GFDMADGNEEF 446
            H AAKGLLNK F +YDE +YVF + R TG  AE+F ++GSN   GY+ G   A  + +F
Sbjct: 470 -HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 529

[Close]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr
Match: KAA0051849.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 402 bits (1032), Expect = 9.71e-131
Identity = 222/387 (57.36%), Postives = 246/387 (63.57%), Query Frame = 0


Query: 73  VRLYDELIKRPVLVTNNCNDQRLKCFE-VGMR----KISTNVLGVCTTKGDFVYVIAGWE 132
           +RLY ELIKRPV VT+NCNDQR KCFE +G+R    +I+ NVLGVC  KGDFVYV+AGWE
Sbjct: 109 LRLYKELIKRPVPVTSNCNDQRWKCFEEIGLRTRKGEIAINVLGVCDMKGDFVYVLAGWE 168

Query: 133 GSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRGAGNAP 192
           GSA DS IL DAI+RENGLQV KGY        PN EGFL PY  QRYH QEWR A NAP
Sbjct: 169 GSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYIGQRYHLQEWRVATNAP 228

Query: 193 TNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGE 252
           TNAKEYFNMKHSS RNVIERAFGVL  RWAILRGKS                       +
Sbjct: 229 TNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKS-----------------------K 288

Query: 253 MTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR------- 312
           MTY DDV++ DEGDSTYAT  A+EDI YI+T  EWSQW D L ESMFT+WQL        
Sbjct: 289 MTYCDDVEDEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFTEWQLHNGTFRSG 348

Query: 313 YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIV 372
           YLAQLVRMM EKLPGC+                                           
Sbjct: 349 YLAQLVRMMAEKLPGCQS------------------------------------------ 408

Query: 373 EKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEG 432
                      H A KGLLNKPFPYYDE TYVFDR R T +FAETF +VGSN+  GGY+ 
Sbjct: 409 -----------HPAVKGLLNKPFPYYDELTYVFDRDRATDQFAETFADVGSNEPGGGYDR 419

Query: 433 FDMADGNEEFPPMYSQGIDMSQDDVRA 438
           FDM DGNE+FPP+YSQG+D+SQDD+ A
Sbjct: 469 FDMGDGNEDFPPVYSQGVDISQDDLEA 419

[Close]

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 570 bits (1469), Expect = 3.24e-195
Identity = 292/435 (67.13%), Postives = 319/435 (73.33%), Query Frame = 0


Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE----------------VGMR--------KIS 130
           A +RLY+ELIKRPV VT+NCNDQR KCFE                 G R        +I+
Sbjct: 82  AVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIA 141

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC  KGDFVYV+AGWEGSA DS IL DAI++ENGLQV KGY        PN EGF
Sbjct: 142 TNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGF 201

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRGA NAPTNAKEYFNMKHSS RNVIERAFGVL  RW ILRGKSYYP
Sbjct: 202 LAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYP 261

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           LQVQCRTILAC  LHNLIN EMTY +DV++ DEGDSTYATT A+EDI YI+TT EWSQW 
Sbjct: 262 LQVQCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWR 321

Query: 311 DELTESMFTDWQLR-------------------------YLAQLVRMMTEKLPGCRVCEM 370
           D+L  SMFTDWQ R                         YLAQLVRMM EKL GC+V   
Sbjct: 322 DDLATSMFTDWQFRGGDSCGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRAT 381

Query: 371 TIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNK 430
           T+IDCRIK LK+TF A A+M GPACSGFGWNDEEKCI+ EKELFD WVR   AAKGLLN 
Sbjct: 382 TVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNN 441

Query: 431 PFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEGFDMADGNEEFPPMYSQGIDMS 447
           PFPYYDE TYVF R R TGRFAETF +VGSN+  GGY+ FDM DGNE+FPP+YS+G+D+ 
Sbjct: 442 PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDIL 501

[Close]

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3BY22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001930 PE=3 SV=1)

HSP 1 Score: 528 bits (1360), Expect = 6.83e-181
Identity = 259/348 (74.43%), Postives = 281/348 (80.75%), Query Frame = 0


Query: 107 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQR 166
           +NVLGVC TKGDFVYV+A WE SA DS IL DA++RENGLQVSKGY NTEGFL PY  QR
Sbjct: 23  SNVLGVCDTKGDFVYVLANWEESAADSQILRDALSRENGLQVSKGYQNTEGFLAPYRGQR 82

Query: 167 YHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTI 226
           YH Q+W G GNAPTNAKEYFNM HSS RNVIERAF VL  RW IL GKSYYPLQVQC TI
Sbjct: 83  YHLQKWHGGGNAPTNAKEYFNMSHSSVRNVIERAFDVLKDRWTILNGKSYYPLQVQCHTI 142

Query: 227 LACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMF 286
           LACC LHNLIN EMTY DDVD VDEGDS YATT A+EDI YI+TT EWSQW DEL ESMF
Sbjct: 143 LACCLLHNLINREMTYCDDVDYVDEGDSRYATTTASEDIQYIETTNEWSQWRDELAESMF 202

Query: 287 TDWQLR-------YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACS 346
           T+WQL        YL QLV MM EKLP C+V   T+ID RIK LK+ F A A+MRGPA S
Sbjct: 203 TNWQLYNGTFRPGYLDQLVHMMAEKLPECQVRATTVIDYRIKTLKRIFQAIAEMRGPAYS 262

Query: 347 GFGWNDEEKCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFV 406
           GFGWN+EEKCII EKELFD WVR H AAKGLLNK FPYY+E TYVF R RTTGRFAETF 
Sbjct: 263 GFGWNNEEKCIIAEKELFDNWVRSHPAAKGLLNKLFPYYNELTYVFSRDRTTGRFAETFA 322

Query: 407 NVGSNKSGGYEGFDMADGNEEFPPMYSQGIDMSQDDVRASRPFRASEG 447
           ++GSN+ G Y+ FDM DGN+EF P+YSQG+D+SQDDVRASRP RASEG
Sbjct: 323 DLGSNEPGRYDRFDMGDGNKEFLPVYSQGMDLSQDDVRASRPSRASEG 370

[Close]

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V9W9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001080 PE=3 SV=1)

HSP 1 Score: 457 bits (1175), Expect = 1.16e-152
Identity = 240/377 (63.66%), Postives = 261/377 (69.23%), Query Frame = 0


Query: 73  VRLYDELIKRPV----------LVTNNCNDQRLKCFEVGMRKISTNVLGVCTTKGDFVYV 132
           VRLY+ELIKRPV           +  N        F     +I+TNVLGVC TKGDFVYV
Sbjct: 41  VRLYEELIKRPVPNCLGALDGTYIKVNVPVGDRPTFRTRKGEIATNVLGVCDTKGDFVYV 100

Query: 133 IAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRG 192
           +A WEGSA DS IL D ++RENGLQV  GY        PN EGFL  Y DQRYH QEWRG
Sbjct: 101 LASWEGSAADSRILRDVLSRENGLQVPNGYYYLCDAGYPNAEGFLALYRDQRYHLQEWRG 160

Query: 193 AGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHN 252
           A NAPTN KEYFNMKHS  RNVIE AFGVL  RWAILRGKS                   
Sbjct: 161 AANAPTNPKEYFNMKHSLARNVIECAFGVLKGRWAILRGKS------------------- 220

Query: 253 LINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR-- 312
               EMTY +DVD+VDEG STYATT A+EDIHYI+TT EWSQW DEL +SMFTD QL   
Sbjct: 221 ----EMTYCEDVDDVDEGGSTYATTTASEDIHYIETTNEWSQWRDELAKSMFTDSQLHNG 280

Query: 313 -----YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEE 372
                YLAQLVRMM EKLPGC+V   T+IDCRIK LK  F   A+MRGPACSGFGWNDEE
Sbjct: 281 TFRPGYLAQLVRMMAEKLPGCQVQATTVIDCRIKTLKGAFQDIAEMRGPACSGFGWNDEE 340

Query: 373 KCIIVEKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSG 424
           KCII EKELFD WVR H AAKGL+NKPFPYY+E TYVF   R T RFAETF +VGSN+ G
Sbjct: 341 KCIIAEKELFDNWVRSHPAAKGLMNKPFPYYNELTYVFGCDRATSRFAETFADVGSNEPG 394

[Close]

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 1.49e-141
Identity = 235/445 (52.81%), Postives = 282/445 (63.37%), Query Frame = 0


Query: 71  ASVRLYDELIKRPVLVTNNCNDQRLKCFE------------------------VGMRKIS 130
           A +RL++EL+K+P  V N C DQR + FE                            +++
Sbjct: 110 AVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVA 169

Query: 131 TNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKGY--------PNTEGF 190
           TNVLGVC TKGDFVYV+AGWEGSA DS IL DA++R N L+V KGY        PN EGF
Sbjct: 170 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGF 229

Query: 191 LGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYP 250
           L PY  QRYH QEWRG  NAP+ +KE+FNMKH S RNVIERAFGVL  RWAILRGKSYYP
Sbjct: 230 LAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYP 289

Query: 251 LQVQCRTILACCFLHNLINGEMTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWH 310
           ++VQCRTILACC LHNLIN EMT +D  DN+DE DST+ATT A +DIHYI+T+ EWSQW 
Sbjct: 290 VEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWR 349

Query: 311 DELTESMFTD-----------------------------WQLR-------YLAQLVRMMT 370
           D L E + T                              W+         YL QL RMM 
Sbjct: 350 DNLAEEIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMA 409

Query: 371 EKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIVEKELFDKWVR 430
            K+PG  +   TI D RIK +K+ FHA A+MRGP CSGFGWNDE+KCI+ EKE+FD W  
Sbjct: 410 FKIPGSNIHASTI-DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS- 469

Query: 431 LHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNKSGGYE-GFDMADGNEEF 446
            H AAKGLLNK F +YDE +YVF + R TG  AE+F ++GSN   GY+ G   A  + +F
Sbjct: 470 -HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 529

[Close]

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UEC4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002780 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 4.70e-131
Identity = 222/387 (57.36%), Postives = 246/387 (63.57%), Query Frame = 0


Query: 73  VRLYDELIKRPVLVTNNCNDQRLKCFE-VGMR----KISTNVLGVCTTKGDFVYVIAGWE 132
           +RLY ELIKRPV VT+NCNDQR KCFE +G+R    +I+ NVLGVC  KGDFVYV+AGWE
Sbjct: 109 LRLYKELIKRPVPVTSNCNDQRWKCFEEIGLRTRKGEIAINVLGVCDMKGDFVYVLAGWE 168

Query: 133 GSATDSWILHDAIARENGLQVSKGY--------PNTEGFLGPYSDQRYHSQEWRGAGNAP 192
           GSA DS IL DAI+RENGLQV KGY        PN EGFL PY  QRYH QEWR A NAP
Sbjct: 169 GSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYIGQRYHLQEWRVATNAP 228

Query: 193 TNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLINGE 252
           TNAKEYFNMKHSS RNVIERAFGVL  RWAILRGKS                       +
Sbjct: 229 TNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKS-----------------------K 288

Query: 253 MTYYDDVDNVDEGDSTYATTIATEDIHYIKTTYEWSQWHDELTESMFTDWQLR------- 312
           MTY DDV++ DEGDSTYAT  A+EDI YI+T  EWSQW D L ESMFT+WQL        
Sbjct: 289 MTYCDDVEDEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFTEWQLHNGTFRSG 348

Query: 313 YLAQLVRMMTEKLPGCRVCEMTIIDCRIKKLKQTFHATADMRGPACSGFGWNDEEKCIIV 372
           YLAQLVRMM EKLPGC+                                           
Sbjct: 349 YLAQLVRMMAEKLPGCQS------------------------------------------ 408

Query: 373 EKELFDKWVRLHLAAKGLLNKPFPYYDERTYVFDRKRTTGRFAETFVNVGSNK-SGGYEG 432
                      H A KGLLNKPFPYYDE TYVFDR R T +FAETF +VGSN+  GGY+ 
Sbjct: 409 -----------HPAVKGLLNKPFPYYDELTYVFDRDRATDQFAETFADVGSNEPGGGYDR 419

Query: 433 FDMADGNEEFPPMYSQGIDMSQDDVRA 438
           FDM DGNE+FPP+YSQG+D+SQDD+ A
Sbjct: 469 FDMGDGNEDFPPVYSQGVDISQDDLEA 419

[Close]

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-21
Identity = 58/150 (38.67%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 98  FEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGLQVSKG------ 157
           F  G   ++ NVL   +    F YV+AGWEGSA+D  +L+ A+ R N LQV +G      
Sbjct: 164 FRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVD 223

Query: 158 --YPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCRWA 217
             YPN  GF+ PY     +S+E          AKE FN +H      I R FG L  R+ 
Sbjct: 224 NKYPNLPGFIAPYHGVSTNSRE---------EAKEMFNERHKLLHRAIHRTFGALKERFP 283

Query: 218 ILRGKSYYPLQVQCRTILACCFLHNLINGE 240
           IL     YPLQ Q + ++A C LHN +  E
Sbjct: 284 ILLSAPPYPLQTQVKLVIAACALHNYVRLE 304

[Close]

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-21
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 119 FVYVIAGWEGSATDSWILHDAIARENGLQVSKGYPNTEGFLGPYSDQRYHSQEWRGAGNA 178
           F+YV++GWEGSA DS +L DA+ +     V  G+ N   FL P+   RYH QE+ G    
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK--FYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRD 84

Query: 179 PTNAKEYFNMKHSSTRNVIERAFGVLNCRWAILRGKSYYPLQVQCRTILACCFLHNLI-- 238
           P    E FN++H S RNVIER FG+   R+AI +    +  + Q   +L C  LHN +  
Sbjct: 85  PETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRK 144

Query: 239 ---NGEMTYYDDVDNV-----DEGDSTYATTIATED-IHYIKTTYE-WSQWHDELTESMF 289
              + E  + D+V N      +EG++     I  E+ +   K   E  + W   + E M+
Sbjct: 145 ECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQDRENTNMWRKSMAEDMW 204

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BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-08
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 148 VSKGYPNTEGFLGPYSDQRYHSQEWRGAGNAPTNAKEYFNMKHSSTRNVIERAFGVLNCR 207
           V+  YP T G+LGP+    YH  ++ G G  P   +E FN KH   R+VI+R FGV   +
Sbjct: 98  VNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGVWKAK 157

Query: 208 WAIL 212
           W IL
Sbjct: 158 WRIL 160

[Close]

BLAST of MELO.jh102145.1.t1 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-06
Identity = 28/95 (29.47%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 91  NDQRLKCFEVGMRKISTNVLGVCTTKGDFVYVIAGWEGSATDSWILHDAIARENGL---- 150
           + +++  F      IS N+L  C    +F+YV++GWEGSA DS +L+DA+ R +      
Sbjct: 39  SQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLNDALTRNSNRLPVP 98

Query: 151 --------QVSKGYPNTEGFLGPYSDQRYHSQEWR 174
                    V +   N +  L     QR ++ +WR
Sbjct: 99  EEDESAEEVVEEVNDNNDEVLTTQDQQREYANQWR 133

The following BLAST results are available for this feature:

BLAST of MELO.jh102145.1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33754.1	6.69e-195	67.13	retrotransposon protein [Cucumis melo subsp. melo]	[more]
TYK03086.1	1.41e-180	74.43	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064030.1	2.40e-152	63.66	retrotransposon protein [Cucumis melo var. makuwa] >TYK26181.1 retrotransposon p...	[more]
ADN34114.1	3.07e-141	52.81	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0051849.1	9.71e-131	57.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102145.1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh102145.1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBB2	3.24e-195	67.13	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5D3BY22	6.83e-181	74.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V9W9	1.16e-152	63.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	1.49e-141	52.81	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7UEC4	4.70e-131	57.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO.jh102145.1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	2.7e-21	38.67	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G35695.1	3.5e-21	34.62	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT4G10890.1	2.0e-08	43.75	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]
AT5G28950.1	3.2e-06	29.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 104..234 e-value: 2.3E-15 score: 56.6
None	No IPR available	PANTHER	PTHR22930:SF211	NUCLEASE HARBI1-RELATED	coord: 104..290
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 104..290

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO.jh102145.1	MELO.jh102145.1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO.jh102145.1.t1.exon11	MELO.jh102145.1.t1.exon11	exon
MELO.jh102145.1.t1.exon10	MELO.jh102145.1.t1.exon10	exon
MELO.jh102145.1.t1.exon9	MELO.jh102145.1.t1.exon9	exon
MELO.jh102145.1.t1.exon8	MELO.jh102145.1.t1.exon8	exon
MELO.jh102145.1.t1.exon7	MELO.jh102145.1.t1.exon7	exon
MELO.jh102145.1.t1.exon6	MELO.jh102145.1.t1.exon6	exon
MELO.jh102145.1.t1.exon5	MELO.jh102145.1.t1.exon5	exon
MELO.jh102145.1.t1.exon4	MELO.jh102145.1.t1.exon4	exon
MELO.jh102145.1.t1.exon3	MELO.jh102145.1.t1.exon3	exon
MELO.jh102145.1.t1.exon2	MELO.jh102145.1.t1.exon2	exon
MELO.jh102145.1.t1.exon1	MELO.jh102145.1.t1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_11	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_10	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_9	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_8	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_7	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_6	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_5	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_4	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_3	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1_2	CDS
cds.MELO.jh102145.1.t1	cds.MELO.jh102145.1.t1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO.jh102145.1.t1	MELO.jh102145.1.t1-protein	polypeptide