MELO.jh034471.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034471.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr02: 4057996 .. 4060327 (-)
Sequence length1554
RNA-Seq ExpressionMELO.jh034471.1.t1
SyntenyMELO.jh034471.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAAGAAAGAGGGGAAAAGAAAAGAGAAAAAGGGAGAAAAAAATTATTATTAATCAAACCCTAGCCGCCACGCCGCCGCGGCCGAGCCGCATCACCCTTCGCGATCTGCGTCCGTCAGCCAGCGCGTCGCGCCGCTCGATCCGACGCAGCGCAAGAGTCCGTCTGCCCTCGCGAGCGAAGCCGTGGTGTGGCGGACCACCGGATCCAAAGCCGGCACCTCGTGCCTCCGACCCGGAACCGAGCCGCGTGCACCGGCCGGCAGCCCGCGTGCGAGCCGCACGTGCCGCTGTACCAAGCCGAGCCGCGCCTGTCTGCGCCGCGAGCCGAGCCGATCTTCAACCTCCAAGCCGAGCCGGTCCCTGTCCTTTTTCCAGCCGAGCCGCCAAGCCTAATTTGGCTCATTCCACCTAATTTTTGGTAAATTAATTAATTATTTTGACATTACCCAATAAGACTCAATGTTTTGGACACTAAATAATTTAATTTGAAACTAAATTAAATTATTTTCCTTAAGGGACGTCTTGGATCAAGTAACTGCTGCAGTGTGGGATTTCTTCAGTAGGGGCTCGAGCATTGCAACCTCTTTCTAGGGTAAGTCATTTCAACTGAGTTTGAACCGTTAGTCGTTGGTGACTTAATTACGAATTTCGGCGTATTAAACAGTTAGGACCTCGTTGCTTGGAAAGCACACTTGCCTCGCGGTTAGAGCTCGCCAAGTAAATCTCTAGGTAAGAGATTCTACTACTAGCTCCATGTTTAGAATTATGAGATCACGTACACCTTCAGTTGTGTACGTTGAGGACTAGACTGTATGATGCATGAAATTGATGTTAGCATGATGCGATTGATGATATGGTTATATTATGGCATGATGTTGTGATGACGAGAACCGTGATGGCTGTACGACGGATGTTGAGATGGAGAGTGAAATGATGATTAATCTGTTATGATTATATGATGATGCCATGTGTATGTATGCTGTGATTAGGGTACCTGTTAGCTTAACCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACACCAGTCTAGCATGGATATAGATATGACTCGAGCGACTCGACGGGGTCCTCGCATCCCGATTGTCCTAGGTGTCCCCCGGGACACCGAAGACCAGAGTTACGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCAGTTACAGGACTCTGATAGGAAGTTAACAGGCACCTAGTGGGACTAGTAGTGGGTCCCTTACTGAGTATTTTATACTCACTCTCTTCATGTCATGTTTTCAGGTAGAGGACAAGGCAAGGGCAAAGGCAAGCTGGCGAGCGACCCGAAGTGACCGTGGCGAGCCATAGGGACTTCTGCTTCCGCTTATTCTTGTTTTTGACTTTAGTACCTGAGTTTGAGTATTCTTCATTATTTACCATCTTTTTATGTAGATAGGGCCCGAGTAGGACTTTAGAACGAATTTCATTTTTGCATACTACCTTGTTTGGATTTTCATAAATAAGATTTCTCAAACCTTATGCGTTTTACTAAATTTTATGACTTAAACCACTTGTTCTATATTTAGTAATAACTTCGATTCGGTATAAGGAGTTGGGTCGTTACATTTATCTTGGCATTACAACTTGAGAGGGAGTGAAACTGAACCAATAACTTGATTGAGTATTTTAAAATACCAAATGCTTATTTAAAATCACACTAAAAACCACACCAAATATGATCCAACAAGTATCGTCATCTCCACTTCATAAAGATTTGCAAATCAACATAGACAATGAGCCTAAGTTTGATTAACAATGAGTTTATCCAACACGTCGCCCAGAAAAGATGCACATCCTCTTCCTTAAAACCCTATAGAAACCCTTCCCATTACCACACTCTTTTCACCCCTCTAAAAGCATCTCTCAAAAGGATTTCTTTCTTTTTTTTTCTTTTTTTCTTTGGGGTTCTTCCAACAAAACCACTTCACTTGCACTCTTCTTCTTCTGTGTCAATCTTCTTTTCTTTTCTATTGTCACTACTGATCAACCACCTCCACCAATTGCAAGCGAAGACGGACTACTACGATGTGCTGAAATTATAACTGATTATGATTCATCCAAAACAATCGGTAGAAAAATGTTGTAAGATGATTCAAGATGTTTTTAATGTTTGCTATAGCGAGTTGAATATATATAGTGATGATGTGTGCATCGCAGTAAGATATTTGGGTGGAAATGATTATTATTGTAATGATTTATAATTAATGTTTCAATCGAAAATATTATTATTATTA

mRNA sequence

AAAGAAAGAAAGAGGGGAAAAGAAAAGAGAAAAAGGGAGAAAAAAATTATTATTAATCAAACCCTAGCCGCCACGCCGCCGCGGCCGAGCCGCATCACCCTTCGCGATCTGCGTCCGTCAGCCAGCGCGTCGCGCCGCTCGATCCGACGCAGCGCAAGAGTCCGTCTGCCCTCGCGAGCGAAGCCGTGGTGTGGCGGACCACCGGATCCAAAGCCGGCACCTCGTGCCTCCGACCCGGAACCGAGCCGCGTGCACCGGCCGGCAGCCCGCGTGCGAGCCGCACGTGCCGCTGTACCAAGCCGAGCCGCGCCTGTCTGCGCCGCGAGCCGAGCCGATCTTCAACCTCCAAGCCGAGCCGGTCCCTGTCCTTTTTCCAGCCGAGCCGCCAAGCCTAATTTGGCTCATTCCACCTAATTTTTGGGACGTCTTGGATCAAGTAACTGCTGCAGTGTGGGATTTCTTCAGTAGGGGCTCGAGCATTGCAACCTCTTTCTAGGTTAGGACCTCGTTGCTTGGAAAGCACACTTGCCTCGCGGTTAGAGCTCGCCAAGTAAATCTCTAGGTAGAGGACAAGGCAAGGGCAAAGGCAAGCTGGCGAGCGACCCGAAGTGACCGTGGCGAGCCATAGGGACTTCTGCTTCCGCTTATTCTTGTTTTTGACTTTAGTACCTGAGTTTGAGTATTCTTCATTATTTACCATCTTTTTATGTAGATAGGGCCCGAGTAGGACTTTAGAACGAATTTCATTTTTGCATACTACCTTGTTTGGATTTTCATAAATAAGATTTCTCAAACCTTATGCGTTTTACTAAATTTTATGACTTAAACCACTTGTTCTATATTTAGTAATAACTTCGATTCGGTATAAGGAGTTGGGTCGTTACATTTATCTTGGCATTACAACTTGAGAGGGAGTGAAACTGAACCAATAACTTGATTGAGTATTTTAAAATACCAAATGCTTATTTAAAATCACACTAAAAACCACACCAAATATGATCCAACAAGTATCGTCATCTCCACTTCATAAAGATTTGCAAATCAACATAGACAATGAGCCTAAGTTTGATTAACAATGAGTTTATCCAACACGTCGCCCAGAAAAGATGCACATCCTCTTCCTTAAAACCCTATAGAAACCCTTCCCATTACCACACTCTTTTCACCCCTCTAAAAGCATCTCTCAAAAGGATTTCTTTCTTTTTTTTTCTTTTTTTCTTTGGGGTTCTTCCAACAAAACCACTTCACTTGCACTCTTCTTCTTCTGTGTCAATCTTCTTTTCTTTTCTATTGTCACTACTGATCAACCACCTCCACCAATTGCAAGCGAAGACGGACTACTACGATGTGCTGAAATTATAACTGATTATGATTCATCCAAAACAATCGGTAGAAAAATGTTGTAAGATGATTCAAGATGTTTTTAATGTTTGCTATAGCGAGTTGAATATATATAGTGATGATGTGTGCATCGCAGTAAGATATTTGGGTGGAAATGATTATTATTGTAATGATTTATAATTAATGTTTCAATCGAAAATATTATTATTATTA

Coding sequence (CDS)

ATGAGCCTAAGTTTGATTAACAATGAGTTTATCCAACACGTCGCCCAGAAAAGATGCACATCCTCTTCCTTAAAACCCTATAGAAACCCTTCCCATTACCACACTCTTTTCACCCCTCTAAAAGCATCTCTCAAAAGGATTTCTTTCTTTTTTTTTCTTTTTTTCTTTGGGGTTCTTCCAACAAAACCACTTCACTTGCACTCTTCTTCTTCTGTGTCAATCTTCTTTTCTTTTCTATTGTCACTACTGATCAACCACCTCCACCAATTGCAAGCGAAGACGGACTACTACGATGTGCTGAAATTATAA

Protein sequence

MSLSLINNEFIQHVAQKRCTSSSLKPYRNPSHYHTLFTPLKASLKRISFFFFLFFFGVLPTKPLHLHSSSSVSIFFSFLLSLLINHLHQLQAKTDYYDVLKL
Homology
The following BLAST results are available for this feature:
BLAST of MELO.jh034471.1.t1 vs.
Match NameE-valueIdentityDescription
BLAST of MELO.jh034471.1.t1 vs.
Match NameE-valueIdentityDescription
BLAST of MELO.jh034471.1.t1 vs.
Match NameE-valueIdentityDescription
BLAST of MELO.jh034471.1.t1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh034471.1MELO.jh034471.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034471.1.t1.exonMELO.jh034471.1.t1.exonexon
MELO.jh034471.1.t1.exonMELO.jh034471.1.t1.exon_2exon
MELO.jh034471.1.t1.exonMELO.jh034471.1.t1.exon_3exon
MELO.jh034471.1.t1.exonMELO.jh034471.1.t1.exon_4exon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034471.1.t1.stop_codonMELO.jh034471.1.t1.stop_codonstop_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034471.1.t1.cdsMELO.jh034471.1.t1.cdsCDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034471.1.t1.start_codonMELO.jh034471.1.t1.start_codonstart_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh034471.1.t1MELO.jh034471.1.t1-proteinpolypeptide