MC10g1073.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC10g1073.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionglycine-rich protein 5
LocationMC10: 11422357 .. 11422812 (+)
Sequence length456
RNA-Seq ExpressionMC10g1073.1
SyntenyMC10g1073.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGCTTCTCTTTCTCATGCTTCTTGGTGCTTTTGTTTGCACCACCGGAGCTCGGAAGCTCGCTGCCGATCCTTTTCAGGATGAGAAATTTTTCCACCACGGTGGTGGGTTAGGCGGTGGGTTTGGCGGAGGCGGTGGTGCGGGAGGTGGTCTTGGTGGTGGTGCTGGAGGCGGTGGCGGTCTAGGCGGAGGAGGAGGTCTCGGTGGAGGATCTGGATTTGGGGGTGGTGCTGGAGGTGGCAGTGGGCTAGGCGGAGGAGGCGGTCTTGGTGGAGGATCTGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGCGGTCTCGGTGGAGGATCCGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGTGGTCTCGGTGGAGGATCTGGATTTGGCGGTGGTGCTGGAGGTGGTGGTGGGCTA

mRNA sequence

ATGGCTTCCAAGCTTCTCTTTCTCATGCTTCTTGGTGCTTTTGTTTGCACCACCGGAGCTCGGAAGCTCGCTGCCGATCCTTTTCAGGATGAGAAATTTTTCCACCACGGTGGTGGGTTAGGCGGTGGGTTTGGCGGAGGCGGTGGTGCGGGAGGTGGTCTTGGTGGTGGTGCTGGAGGCGGTGGCGGTCTAGGCGGAGGAGGAGGTCTCGGTGGAGGATCTGGATTTGGGGGTGGTGCTGGAGGTGGCAGTGGGCTAGGCGGAGGAGGCGGTCTTGGTGGAGGATCTGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGCGGTCTCGGTGGAGGATCCGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGTGGTCTCGGTGGAGGATCTGGATTTGGCGGTGGTGCTGGAGGTGGTGGTGGGCTA

Coding sequence (CDS)

ATGGCTTCCAAGCTTCTCTTTCTCATGCTTCTTGGTGCTTTTGTTTGCACCACCGGAGCTCGGAAGCTCGCTGCCGATCCTTTTCAGGATGAGAAATTTTTCCACCACGGTGGTGGGTTAGGCGGTGGGTTTGGCGGAGGCGGTGGTGCGGGAGGTGGTCTTGGTGGTGGTGCTGGAGGCGGTGGCGGTCTAGGCGGAGGAGGAGGTCTCGGTGGAGGATCTGGATTTGGGGGTGGTGCTGGAGGTGGCAGTGGGCTAGGCGGAGGAGGCGGTCTTGGTGGAGGATCTGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGCGGTCTCGGTGGAGGATCCGGATTTGGTGGTGGTGCTGGAGGCGGCGGTGGGCTAGGCGGGGGAGGTGGTCTCGGTGGAGGATCTGGATTTGGCGGTGGTGCTGGAGGTGGTGGTGGGCTA

Protein sequence

MASKLLFLMLLGAFVCTTGARKLAADPFQDEKFFHHGGGLGGGFGGGGGAGGGLGGGAGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGGGGL
Homology
BLAST of MC10g1073.1 vs. NCBI nr
Match: XP_031737995.1 (glycine-rich protein 5 [Cucumis sativus] >KGN56074.1 hypothetical protein Csa_011582 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 7.44e-12
Identity = 97/136 (71.32%), Postives = 100/136 (73.53%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTGARKLAADPFQDEKFFHHGG---GLGGGFGGGGGAGGGLGGG 60
           MA KL FLMLLG F C TGARKLA DP +DEKFFH GG   G GGG GGGGGAGGG GGG
Sbjct: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60

Query: 61  AGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGGGGLGGG 120
           +          G GGGSGFGGGAGGG   GGGGGLGGGS  GGG G GGG GGG G GGG
Sbjct: 61  S----------GFGGGSGFGGGAGGG--YGGGGGLGGGS--GGGFGSGGGFGGGYGSGGG 120

Query: 121 SGFGGGAGGGGGLGGG 133
            GFGGG+GGGGGLGGG
Sbjct: 121 GGFGGGSGGGGGLGGG 122

BLAST of MC10g1073.1 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.41e-11
Identity = 107/156 (68.59%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTT-GARKLAADPFQDEKFFHH----GGGLGGGFGGG--GGAGGG 60
           MASK++FL+ LGAF+ TT GARKL+   FQDEKFFH     GGGLGGG GGG  GG GGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGAGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGGGG 120
           LGGG+        GGG GGGSGFGGG GGG+G GGGGG GGG        GGGGLGGG G
Sbjct: 61  LGGGS--------GGGFGGGSGFGGGVGGGAGGGGGGGFGGG--------GGGGLGGGSG 120

Query: 121 LGGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGG 149
            GGG+GFGGG+GGGGGLGGGGG GGG GFGGG GGG
Sbjct: 121 FGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGG 140

BLAST of MC10g1073.1 vs. NCBI nr
Match: XP_012070859.1 (glycine-rich cell wall structural protein [Jatropha curcas] >KDP39153.1 hypothetical protein JCGZ_00910 [Jatropha curcas])

HSP 1 Score: 67.4 bits (163), Expect = 1.04e-10
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 3   SKLLFLMLLGAFVCTTG-ARKLAADPFQDEKFFHHGGGLGGGFGGGGGAGGGLGGGAGGG 62
           SKLL ++LLGA VCTT  ARKL +  F+DEK   HGGGLGGG GGGGGAGGGLGGG+   
Sbjct: 6   SKLLLVLLLGALVCTTSFARKLVSSSFRDEKNLFHGGGLGGGLGGGGGAGGGLGGGS--- 65

Query: 63  GGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGG 111
                  GLGGG+GFGGGAG G G G GGG GGG GFGGGAGGGGGLGGG
Sbjct: 66  -------GLGGGAGFGGGAGAGGGAGLGGGAGGGGGFGGGAGGGGGLGGG 105

BLAST of MC10g1073.1 vs. NCBI nr
Match: XP_022151305.1 (glycine-rich protein 5 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.57e-09
Identity = 103/161 (63.98%), Postives = 109/161 (67.70%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTG-ARKLAADPFQDEKFFHH----------------GGGLGGG 60
           MASK+LFL+LL AF+CTT  ARKL    F D+KFFH                 GGGLGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGGGGGLGGG 60

Query: 61  FGGG----GGAGGGLGGGAGGG-----GGLGGGGGLGGGSG--FGGGAGGGSGLGGGGGL 120
           FGGG    GGAGGG GGGAGGG     GGLGGGGG+GGG+G  FGGGAG G GLGGGGG 
Sbjct: 61  FGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGGGLGGGGGA 120

Query: 121 GGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGGGGLGGG 133
           GGG GFGGG GGG        LGGGSGFGGGAG GGG GGG
Sbjct: 121 GGGGGFGGGRGGG--------LGGGSGFGGGAGAGGGFGGG 153

BLAST of MC10g1073.1 vs. NCBI nr
Match: PSS06125.1 (hypothetical protein CEY00_Acc19398 [Actinidia chinensis var. chinensis])

HSP 1 Score: 60.5 bits (145), Expect = 3.17e-08
Identity = 76/108 (70.37%), Postives = 81/108 (75.00%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTGARKLAADP---FQDEKFFHHGGGLGGGFGGGGGAGGGLGGG 60
           M SK L L+LLGA VCTT +RKL +     F+D KFF  GGGLGGG G GGG GGGLGGG
Sbjct: 1   MTSKFLLLVLLGALVCTTSSRKLVSTTKGSFEDSKFFGPGGGLGGGGGFGGGGGGGLGGG 60

Query: 61  AGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGG 105
            G GGG G GGG+GGG G GGG GGG G GGGGGLGGGSGFGGG GGG
Sbjct: 61  GGAGGGSGFGGGVGGGGGLGGGGGGGFGGGGGGGLGGGSGFGGGVGGG 108

BLAST of MC10g1073.1 vs. ExPASy TrEMBL
Match: A0A0A0L4Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064230 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.60e-12
Identity = 97/136 (71.32%), Postives = 100/136 (73.53%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTGARKLAADPFQDEKFFHHGG---GLGGGFGGGGGAGGGLGGG 60
           MA KL FLMLLG F C TGARKLA DP +DEKFFH GG   G GGG GGGGGAGGG GGG
Sbjct: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60

Query: 61  AGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGGGGLGGG 120
           +          G GGGSGFGGGAGGG   GGGGGLGGGS  GGG G GGG GGG G GGG
Sbjct: 61  S----------GFGGGSGFGGGAGGG--YGGGGGLGGGS--GGGFGSGGGFGGGYGSGGG 120

Query: 121 SGFGGGAGGGGGLGGG 133
            GFGGG+GGGGGLGGG
Sbjct: 121 GGFGGGSGGGGGLGGG 122

BLAST of MC10g1073.1 vs. ExPASy TrEMBL
Match: A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.65e-11
Identity = 107/156 (68.59%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTT-GARKLAADPFQDEKFFHH----GGGLGGGFGGG--GGAGGG 60
           MASK++FL+ LGAF+ TT GARKL+   FQDEKFFH     GGGLGGG GGG  GG GGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGAGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGGGG 120
           LGGG+        GGG GGGSGFGGG GGG+G GGGGG GGG        GGGGLGGG G
Sbjct: 61  LGGGS--------GGGFGGGSGFGGGVGGGAGGGGGGGFGGG--------GGGGLGGGSG 120

Query: 121 LGGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGG 149
            GGG+GFGGG+GGGGGLGGGGG GGG GFGGG GGG
Sbjct: 121 FGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGG 140

BLAST of MC10g1073.1 vs. ExPASy TrEMBL
Match: A0A067KVZ9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00910 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.03e-11
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 0

Query: 3   SKLLFLMLLGAFVCTTG-ARKLAADPFQDEKFFHHGGGLGGGFGGGGGAGGGLGGGAGGG 62
           SKLL ++LLGA VCTT  ARKL +  F+DEK   HGGGLGGG GGGGGAGGGLGGG+   
Sbjct: 6   SKLLLVLLLGALVCTTSFARKLVSSSFRDEKNLFHGGGLGGGLGGGGGAGGGLGGGS--- 65

Query: 63  GGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGGGGLGGG 111
                  GLGGG+GFGGGAG G G G GGG GGG GFGGGAGGGGGLGGG
Sbjct: 66  -------GLGGGAGFGGGAGAGGGAGLGGGAGGGGGFGGGAGGGGGLGGG 105

BLAST of MC10g1073.1 vs. ExPASy TrEMBL
Match: A0A6J1DAT8 (glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.73e-09
Identity = 103/161 (63.98%), Postives = 109/161 (67.70%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTG-ARKLAADPFQDEKFFHH----------------GGGLGGG 60
           MASK+LFL+LL AF+CTT  ARKL    F D+KFFH                 GGGLGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGGGGGLGGG 60

Query: 61  FGGG----GGAGGGLGGGAGGG-----GGLGGGGGLGGGSG--FGGGAGGGSGLGGGGGL 120
           FGGG    GGAGGG GGGAGGG     GGLGGGGG+GGG+G  FGGGAG G GLGGGGG 
Sbjct: 61  FGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGGGLGGGGGA 120

Query: 121 GGGSGFGGGAGGGGGLGGGGGLGGGSGFGGGAGGGGGLGGG 133
           GGG GFGGG GGG        LGGGSGFGGGAG GGG GGG
Sbjct: 121 GGGGGFGGGRGGG--------LGGGSGFGGGAGAGGGFGGG 153

BLAST of MC10g1073.1 vs. ExPASy TrEMBL
Match: A0A2R6QDG5 (Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19398 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.53e-08
Identity = 76/108 (70.37%), Postives = 81/108 (75.00%), Query Frame = 0

Query: 1   MASKLLFLMLLGAFVCTTGARKLAADP---FQDEKFFHHGGGLGGGFGGGGGAGGGLGGG 60
           M SK L L+LLGA VCTT +RKL +     F+D KFF  GGGLGGG G GGG GGGLGGG
Sbjct: 1   MTSKFLLLVLLGALVCTTSSRKLVSTTKGSFEDSKFFGPGGGLGGGGGFGGGGGGGLGGG 60

Query: 61  AGGGGGLGGGGGLGGGSGFGGGAGGGSGLGGGGGLGGGSGFGGGAGGG 105
            G GGG G GGG+GGG G GGG GGG G GGGGGLGGGSGFGGG GGG
Sbjct: 61  GGAGGGSGFGGGVGGGGGLGGGGGGGFGGGGGGGLGGGSGFGGGVGGG 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031737995.17.44e-1271.32glycine-rich protein 5 [Cucumis sativus] >KGN56074.1 hypothetical protein Csa_01... [more]
KAA0065825.13.41e-1168.59glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa][more]
XP_012070859.11.04e-1070.00glycine-rich cell wall structural protein [Jatropha curcas] >KDP39153.1 hypothet... [more]
XP_022151305.13.57e-0963.98glycine-rich protein 5 [Momordica charantia][more]
PSS06125.13.17e-0870.37hypothetical protein CEY00_Acc19398 [Actinidia chinensis var. chinensis][more]
Match NameE-valueIdentityDescription
A0A0A0L4Y23.60e-1271.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064230 PE=4 SV=1[more]
A0A5A7VJD11.65e-1168.59Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A067KVZ95.03e-1170.00Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00910 PE=4 SV=1[more]
A0A6J1DAT81.73e-0963.98glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1[more]
A0A2R6QDG51.53e-0870.37Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC10g1073MC10g1073gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC10g1073.1-cdsMC10g1073.1-cds-MC10:11422357..11422812CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC10g1073.1MC10g1073.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane