MC08g_new0270.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0270.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC08: 14590319 .. 14593311 (-)
Sequence length189
RNA-Seq ExpressionMC08g_new0270.1
SyntenyMC08g_new0270.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGCCCAAAACTCTTTTTCTTTCTTCCTTAGGTTTGCCGCCAGGACAATTATATAGGTCAGTATTTCTTAATTTTTGGTTTAGCCGACAGTAAAAAGAAACCAAAGAGTGGCGGGCAATTTTGTGTTGTTACACAAAATCAGAGGAGCGGTAGTGGCAGTGTATTGGCACAGGAAGAAGGTCGAGATTTCGGAGTTGTAGAATGACGTCGGCAACCACTTTTGGTGAGTAGTTGGTGAAGTTTTTCATTCCTCTATTCCTAGGATTCTATTATTGTAGTTCATAGAAGCTAGATGACTTTTGTTGAGGCCTCTAGATCATAGTAGAATTCGTTATCGCGGAAGACTAGATGTAGTCATTATCTGGGTGAACCAATATAAATTATTGTGCCGTTTACTGTGCTTTCCCTATATTTCTCTTATTATTGTGGTTGGTTTATTTTTTCACTTAAGAATTGTGGAAGGGGAAAATATTCTATGTAAGCAATTTTTCCAACAAGTGGTATAAGAACTGTTATGTTTTAGCATCATGGGATTTAGTGGGAAGTCACATCATACTTCGAGGGGGTTTTGAGATTTGGTGGGAAAAACTTCGGGTTTTGGAAGATGCAAATGATGAATCTTCTTACATACAAGAAGATACACAAAACTCTAAAAGAACGACATGCTACTTGGATGACAGACAAGGAATGGGTGGAGATGAATGAACAGGTCCTATCGATCATCAGGTTGTGTTTGTCGATGAATGTGGCAAGTCAGAAAACGACGATGAGACTGATGAAGGCATTGACAGACATATACGAAAAACTCTCTACCAACAGCAAGATGTATCTCATCATGATATACTTTAACATTCATATGGAGGAAGACACGTCAGTGAACTCCCACATCAATGAGGTGACTAAATTGATGAATCAGTTGGAGTCGATGGATATCACATTTTCAGAGGAAGTGAAGGCTATAAAGTTACTGTCTTCTTTGCGTGAGAGCTGAGAAACGATGAAAACAGCAGTGTCAAATTTGTTGGGGACAAGAGTCTGAAATTTTCAGATATCTGTGATGCTGCAATTGCTGATGAGATTTGCAGGAAATGAAGTGGAAAGAATTCTGCATTCATTTATGGTAGGGAGAACTCTATGGAGTACTCAGTTTTGGCAGTTCAGAGCGAATGCAAAGGAAGATGAGATATGAGAAACATCAGGGAAATGGCTAGAGGAGTGAGAGTAGTGAGATTGAATGTTTTTACTGCCATAAGAAGAATCACTTCAAGAAACACTGCAATAAGCTAAAAGAGAATCAAGCAAAGGAAATATAGACAAATGTTTTATCATATGACATGTTGTTAGCATGCATTGAGAGTGACATGACATTTATGTATTTGTCATCAAAATGGGTAGTGGATAGTGCAACTTCGGTGCATGTATCTTCAGACAGGAGTTAGTTCACGTCCTTCACTTCATGGAATCATGGTGCGATGAGGATGAGAAATGGGAAACTCTCCAAGATCAGAGGAATTGAGGATGTTCGTCTGAGGACTAACAGTGGGACCGAGTTAGTTTTGCATGATGTCAGGTACATACCCAGTTTTAAAATGAATTTGATATCAGTACGGAAGCTGGATGATGACAGTTTTACAGAAGTGAGTTTGCAAAGAACAGAGTGAAAACTCATGAGAGGATCTGAGATAGTGGTTGTTGGCCATAGAGAAGCTTCGGCATATGTGTTGAGATTTGATTTTGTTAGAGGATTAGAGAGATAGGTTATGCACAGGGCTGTAGATAGTTCAGGGAGAGACTAAAACTAGCAGCATTGACAGTCATGATAAACCAGGAAAAGCTGCCATCAGTCTATAGCTAGGAAGTAGAGGAAAAGGAAAGAAGAAAAGCTCAGTGAGGTGTTCAGTGGACTGTTAGAATAAAACCTCAGTTGTCAGACGAATTAGCAAGCTAAGCAAAAGAGTGCATTGAAGAAAAAGACTACAGTTCACACTGAGGTCAGGGGTGAAGTCTTTAGCTTGGCAACAGACTTGGTTGGGTTGGCTAAGTCATAAGTGAAGAAGTTTTCCTTCAGGAGTCGTTGGGTGCGAGTGAAGAAGGAAGCATAGGGGACCACTGAGTTCGAGTGGGAGCACGTGATTGTATCTCTTACGTATAGAATACAAGACTACATATGATTGCTCAGTCTCAGGGCAATCACAAATGGAATCTTGGTTGGTGCCAAGACAATATTAGAAGCTATCAGGTGCAATGAGAGTAGAGTCTTGGTTGCTGCCAAGATGTTGATAACTTAGAAGTTGTTAGTGCAGTTAGAACTGAGACATGAGGAACACTACTGTTGCAGTGGGAGGGGAGGTTGTTATTTTATCTCCAAATGGGATATTGTTGGGATATAATGGAGCCAAAAAACAAAAAACAAATATTAATAGTGGAAAAGTGACTGGGCAAGAAACTTAAAAAGCCCCAAAAAAAAAAAATATTCTTCCTCCTTAGGTTTGCCGTCAATACACTTATATAGGTACCTATTTCTTTTAGGTTTGCCACCACTACACTTATATAGGTAAATATTTCTTAATTTTTGGTTTAGCCAATAGTAAAAAGAAACCAAAAAGAGTGGTGGCCAATTTTGTGTTGTTGTACAAAATTAGAGGAGCGGTAGTGACAGTGTATTGGCAGAGGAAGAAGGTCGAGATCTCAGAGTTGTAGAACAGCGTTGGTAACCAGTTTCGTGGGTATTTGGTGAGGTTTTTCATTCCTTTATTCTTATGATTCTATTATTGTAGTTCCTAGAAACTAGATGGCTTTTGTTGAGGCCTCTAGATTTGAGATTGTATTGTCCATTGTTTATCCCCAAATCACAGTAGAATCTGTTATCGCGGAAGACTAGACGTAACCTTGTTTGGGTGAACCAGTAAAAATTATTGTGTCGTTTACTACGTTTTCCTTATATTTTTCTTATTATTGTAGTTGGCTTAGTTTTTCACTGAAGAACCGTG

mRNA sequence

ATGAGGATGAGAAATGGGAAACTCTCCAAGATCAGAGGAATTGAGGATGTTCGTCTGAGGACTAACAGTGGGACCGAGTTAGTTTTGCATGATGTCAGGTACATACCCAGTTTTAAAATGAATTTGATATCAGTACGGAAGCTGGATGATGACAGTTTTACAGAAGTGAGTTTGCAAAGAACAGAGTGA

Coding sequence (CDS)

ATGAGGATGAGAAATGGGAAACTCTCCAAGATCAGAGGAATTGAGGATGTTCGTCTGAGGACTAACAGTGGGACCGAGTTAGTTTTGCATGATGTCAGGTACATACCCAGTTTTAAAATGAATTTGATATCAGTACGGAAGCTGGATGATGACAGTTTTACAGAAGTGAGTTTGCAAAGAACAGAGTGA

Protein sequence

MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEVSLQRTE
Homology
[Close]
BLAST of MC08g_new0270.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSF 54
           ++M N   SKI GI D+ ++TN G  LVL DVR++P  +MNLIS   LD D +
Sbjct: 322 VKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGY 374

[Close]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.97e-09
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 3  MRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLD 49
          M NG +SK+RGI DV L+T  G ELVL  VRYIPSF+ NL+SV KL+
Sbjct: 1  MGNGSISKVRGIGDVGLKTGEGVELVLRGVRYIPSFRFNLLSVGKLE 47

[Close]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match: BBG97327.1 (hypothetical protein Prudu_006413 [Prunus dulcis])

HSP 1 Score: 58.9 bits (141), Expect = 2.19e-09
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1  MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEV 56
          +RM N KLSKI G  D+ L TN+   LVL DVR++P  ++NLIS   LDD+ +T V
Sbjct: 16 VRMGNDKLSKIVGRGDISLETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNV 71

[Close]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match: KAF8410356.1 (hypothetical protein HHK36_002884 [Tetracentron sinense])

HSP 1 Score: 62.0 bits (149), Expect = 3.20e-09
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 1    MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSF 53
            +RMRN  +SKI GI DV L TN G +LVL DVR++P  ++NLIS  KLDD  +
Sbjct: 1019 VRMRNNDISKIEGIGDVCLETNVGCKLVLKDVRHVPDLRLNLISAGKLDDGGY 1071

[Close]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match: RVW26975.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 59.3 bits (142), Expect = 2.85e-08
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSF 53
           +RM N  L+K  G+ DVRL T++GT L L +V++IP  +MNLIS RKLDD+ F
Sbjct: 73  VRMGNDGLAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGF 125

[Close]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match: BBH02115.1 (hypothetical protein Prudu_012585 [Prunus dulcis])

HSP 1 Score: 58.9 bits (141), Expect = 3.80e-08
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEV 56
           +RM N KLSKI G  D+ L TN+   LVL DVR++P  ++NLIS   LDD+ +T V
Sbjct: 147 VRMGNDKLSKIVGRGDISLETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNV 202

[Close]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match: A0A6J1DVE9 (uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023870 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.54e-10
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 3  MRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLD 49
          M NG +SK+RGI DV L+T  G ELVL  VRYIPSF+ NL+SV KL+
Sbjct: 1  MGNGSISKVRGIGDVGLKTGEGVELVLRGVRYIPSFRFNLLSVGKLE 47

[Close]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match: A0A4Y1QZW0 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_006413 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.06e-09
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1  MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEV 56
          +RM N KLSKI G  D+ L TN+   LVL DVR++P  ++NLIS   LDD+ +T V
Sbjct: 16 VRMGNDKLSKIVGRGDISLETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNV 71

[Close]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match: A0A438CUU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1962 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.38e-08
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSF 53
           +RM N  L+K  G+ DVRL T++GT L L +V++IP  +MNLIS RKLDD+ F
Sbjct: 73  VRMGNDGLAKAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGF 125

[Close]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match: A0A4Y1RDN6 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_012585 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.84e-08
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEV 56
           +RM N KLSKI G  D+ L TN+   LVL DVR++P  ++NLIS   LDD+ +T V
Sbjct: 147 VRMGNDKLSKIVGRGDISLETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNV 202

[Close]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match: A0A4Y1R5B0 (Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_009010 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.88e-08
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1   MRMRNGKLSKIRGIEDVRLRTNSGTELVLHDVRYIPSFKMNLISVRKLDDDSFTEV 56
           +RM N KLSKI G  D+ L TN+   LVL DVR++P  ++NLIS   LDD+ +T V
Sbjct: 315 VRMGNDKLSKIVGRGDISLETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNV 370

The following BLAST results are available for this feature:
BLAST of MC08g_new0270.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109782.8e-0649.06Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of MC08g_new0270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157059.11.97e-0963.83uncharacterized protein LOC111023870 [Momordica charantia][more]
BBG97327.12.19e-0951.79hypothetical protein Prudu_006413 [Prunus dulcis][more]
KAF8410356.13.20e-0956.60hypothetical protein HHK36_002884 [Tetracentron sinense][more]
RVW26975.12.85e-0854.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
BBH02115.13.80e-0851.79hypothetical protein Prudu_012585 [Prunus dulcis][more]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVE99.54e-1063.83uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A4Y1QZW01.06e-0951.79Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_006413 PE=4 SV=1[more]
A0A438CUU11.38e-0854.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A4Y1RDN61.84e-0851.79Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_012585 PE=4 SV=1[more]
A0A4Y1R5B01.88e-0851.79Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_... [more]
BLAST of MC08g_new0270.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC08g_new0270MC08g_new0270gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC08g_new0270.1-cdsMC08g_new0270.1-cds-MC08:14591648..14591836CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC08g_new0270.1MC08g_new0270.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006790 sulfur compound metabolic process
molecular_function GO:0043167 ion binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding