MC07g_new0237.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC07g_new0237.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptioncaffeic acid 3-O-methyltransferase-like
LocationMC07: 7753856 .. 7755252 (-)
Sequence length684
RNA-Seq ExpressionMC07g_new0237.1
SyntenyMC07g_new0237.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGTACTTTCTCCCCCTTCCATTAGGTAGTTCTTTAGACTCCTCCCTTAGGTCTGATCATGAGTAGCTCGTCGAATGATCCGTCGTCTGAGTCGTCTAGTTCTTCTAGTATAGATAATATCTTAGGAGACCCGAACTTAGCCTCTACCTTGCAAAATCCCAACCTGGCCTCCACCTCTGGAAGGCCTGTGGCTAGCCTGGTAGTCGAGCTCCCTCCCTCAACCTGCTCGGTAGGTAGGCTGGCTGAGCTTCACAAACATACCTCATACCTGACTCCGTAGAGCTTAGGGTGCCCAAGGTCGGCGAATACCTCCAGGATCCCCCTCCTAGTTTCGTTAGCTTCTACCCTCAGATGTTCAATAGGGAGATCAGGCTTCTTCTTCACCCATTCATCCAGAGGTTCCTTAACATGGTCAACCTTGCCCCAGCTCAGCTCTCTCCCAACAATTGGTCCACCGTGCTTGGAGCTTATGTTCTATGGTGGATCATCTGGAACGAGAATGAGGATAGGCTCACTATAGATCAGCTCTTAGCGACTCACATCGTCAAAGACTCCAACGAGGGAGAGGGTCGGTACTACCTCTCTACTCGGCGGAATATAGGTAAGCTTATTAGGAATGCTTCTTCTAATAAAAACTGAAAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGGTGAGTGTCCTAGGTACGAGTTAGTTTTTTTATACTTTCGTGCCTTTATTTCTGACGATGCTTCATGGTGCAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

mRNA sequence

ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

Coding sequence (CDS)

ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

Protein sequence

MDKSCLLFLSRSDDSRASRLLYKRRRFFFFHFALFTSKLFEYLGHCPSQECWFFVFGDWLVKNEEGELICHVPVEFRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEALVSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFFEMASKFLALNSGNWQHASTWTAPPAPFQACRRTSSADVPAPELANLAKLQALQA
Homology
[Close]
BLAST of MC07g_new0237.1 vs. NCBI nr
Match: XP_022154107.1 (caffeic acid 3-O-methyltransferase-like [Momordica charantia])

HSP 1 Score: 130 bits (328), Expect = 1.81e-33
Identity = 78/145 (53.79%), Postives = 91/145 (62.76%), Query Frame = 0 

Query: 59  WLVKNEEG----ELICHVPVE-FRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEAL 118
           + V+NE+G     +I  +  + F D     PVSRI NKSWEI++RAQ RSLKYALWGEAL
Sbjct: 113 YFVRNEDGVSLGPMISLIQDQVFLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEAL 172

Query: 119 VSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFF 178
           V NSHLFS+GLS +DQPDE KKLPKPRQ  S+KRK PE                      
Sbjct: 173 VLNSHLFSSGLSSHDQPDEFKKLPKPRQHSSQKRKAPE---------------------- 232

Query: 179 EMASKFLALNSGNWQHASTWTAPPA 198
           EMASKFLAL+S   Q AS  + PPA
Sbjct: 233 EMASKFLALSSTKRQRASAPSIPPA 235

[Close]
BLAST of MC07g_new0237.1 vs. ExPASy TrEMBL
Match: A0A6J1DKS4 (caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111021443 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 8.78e-34
Identity = 78/145 (53.79%), Postives = 91/145 (62.76%), Query Frame = 0 

Query: 59  WLVKNEEG----ELICHVPVE-FRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEAL 118
           + V+NE+G     +I  +  + F D     PVSRI NKSWEI++RAQ RSLKYALWGEAL
Sbjct: 113 YFVRNEDGVSLGPMISLIQDQVFLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEAL 172

Query: 119 VSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFF 178
           V NSHLFS+GLS +DQPDE KKLPKPRQ  S+KRK PE                      
Sbjct: 173 VLNSHLFSSGLSSHDQPDEFKKLPKPRQHSSQKRKAPE---------------------- 232

Query: 179 EMASKFLALNSGNWQHASTWTAPPA 198
           EMASKFLAL+S   Q AS  + PPA
Sbjct: 233 EMASKFLALSSTKRQRASAPSIPPA 235

The following BLAST results are available for this feature:
BLAST of MC07g_new0237.1 vs.
Match NameE-valueIdentityDescription
BLAST of MC07g_new0237.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154107.11.81e-3353.79caffeic acid 3-O-methyltransferase-like [Momordica charantia][more]
BLAST of MC07g_new0237.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DKS48.78e-3453.79caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of MC07g_new0237.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..152

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC07g_new0237MC07g_new0237gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC07g_new0237.1-cdsMC07g_new0237.1-cds-MC07:7753856..7754301CDS
MC07g_new0237.1-cdsMC07g_new0237.1-cds-MC07:7754375..7754465CDS
MC07g_new0237.1-cdsMC07g_new0237.1-cds-MC07:7755106..7755252CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC07g_new0237.1MC07g_new0237.1-proteinpolypeptide