MC07g_new0237 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0237
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	caffeic acid 3-O-methyltransferase-like
Location	MC07: 7753856 .. 7755252 (-)
RNA-Seq Expression	MC07g_new0237
Synteny	MC07g_new0237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGTACTTTCTCCCCCTTCCATTAGGTAGTTCTTTAGACTCCTCCCTTAGGTCTGATCATGAGTAGCTCGTCGAATGATCCGTCGTCTGAGTCGTCTAGTTCTTCTAGTATAGATAATATCTTAGGAGACCCGAACTTAGCCTCTACCTTGCAAAATCCCAACCTGGCCTCCACCTCTGGAAGGCCTGTGGCTAGCCTGGTAGTCGAGCTCCCTCCCTCAACCTGCTCGGTAGGTAGGCTGGCTGAGCTTCACAAACATACCTCATACCTGACTCCGTAGAGCTTAGGGTGCCCAAGGTCGGCGAATACCTCCAGGATCCCCCTCCTAGTTTCGTTAGCTTCTACCCTCAGATGTTCAATAGGGAGATCAGGCTTCTTCTTCACCCATTCATCCAGAGGTTCCTTAACATGGTCAACCTTGCCCCAGCTCAGCTCTCTCCCAACAATTGGTCCACCGTGCTTGGAGCTTATGTTCTATGGTGGATCATCTGGAACGAGAATGAGGATAGGCTCACTATAGATCAGCTCTTAGCGACTCACATCGTCAAAGACTCCAACGAGGGAGAGGGTCGGTACTACCTCTCTACTCGGCGGAATATAGGTAAGCTTATTAGGAATGCTTCTTCTAATAAAAACTGAAAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGGTGAGTGTCCTAGGTACGAGTTAGTTTTTTTATACTTTCGTGCCTTTATTTCTGACGATGCTTCATGGTGCAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

mRNA sequence

ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

Coding sequence (CDS)

ATGGACAAATCCTGTCTGTTGTTTCTCTCTCGATCGGACGACTCTCGTGCCTCTAGGCTGCTCTATAAAAGGCGGAGGTTTTTCTTTTTTCACTTTGCACTTTTCACTTCGAAGCTTTTTGAGTACCTCGGTCATTGCCCAAGTCAGGAGTGCTGGTTCTTTGTCTTCGGCGATTGGCTCGTGAAAAATGAAGAGGGTGAGCTGATCTGCCATGTCCCAGTAGAGTTCAGAGACGTAGCTCTACCATCTCCCGTTTCGAGGATCAGCAACAAATCGTGGGAGATCGTCAAGCGCGCTCAGAGCCGGAGTCTGAAGTACGCACTGTGGGGCGAGGCACTTGTTTCAAACTCCCACCTTTTCTCCAACGGCCTCAGTCCGTACGACCAACCGGACGAACTCAAGAAGCTACCTAAGCCTCGGCAGCGTAGGTCGGAAAAACGCAAGGGTCCAGAAGGTAACCTCGGCTCGGCACTTAAGCTTATATTTGTAATCTCTTTAACTAACATCGACATCTTTTTTGAGATGGCCTCCAAGTTCCTTGCACTCAACAGCGGAAACTGGCAACACGCTTCAACCTGGACTGCCCCACCTGCGCCCTTTCAAGCTTGTCGCCGCACGAGCAGTGCCGATGTCCCGGCCCCCGAGCTAGCTAATCTGGCCAAGCTTCAGGCTCTCCAAGCTTAG

Protein sequence

MDKSCLLFLSRSDDSRASRLLYKRRRFFFFHFALFTSKLFEYLGHCPSQECWFFVFGDWLVKNEEGELICHVPVEFRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEALVSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFFEMASKFLALNSGNWQHASTWTAPPAPFQACRRTSSADVPAPELANLAKLQALQA

Homology

[Close]

BLAST of MC07g_new0237 vs. NCBI nr
Match: XP_022154107.1 (caffeic acid 3-O-methyltransferase-like [Momordica charantia])

HSP 1 Score: 130 bits (328), Expect = 1.81e-33
Identity = 78/145 (53.79%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 59  WLVKNEEG----ELICHVPVE-FRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEAL 118
           + V+NE+G     +I  +  + F D     PVSRI NKSWEI++RAQ RSLKYALWGEAL
Sbjct: 113 YFVRNEDGVSLGPMISLIQDQVFLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEAL 172

Query: 119 VSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFF 178
           V NSHLFS+GLS +DQPDE KKLPKPRQ  S+KRK PE                      
Sbjct: 173 VLNSHLFSSGLSSHDQPDEFKKLPKPRQHSSQKRKAPE---------------------- 232

Query: 179 EMASKFLALNSGNWQHASTWTAPPA 198
           EMASKFLAL+S   Q AS  + PPA
Sbjct: 233 EMASKFLALSSTKRQRASAPSIPPA 235

[Close]

BLAST of MC07g_new0237 vs. ExPASy TrEMBL
Match: A0A6J1DKS4 (caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111021443 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 8.78e-34
Identity = 78/145 (53.79%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 59  WLVKNEEG----ELICHVPVE-FRDVALPSPVSRISNKSWEIVKRAQSRSLKYALWGEAL 118
           + V+NE+G     +I  +  + F D     PVSRI NKSWEI++RAQ RSLKYALWGEAL
Sbjct: 113 YFVRNEDGVSLGPMISLIQDQVFLDSCPAIPVSRIDNKSWEIIRRAQGRSLKYALWGEAL 172

Query: 119 VSNSHLFSNGLSPYDQPDELKKLPKPRQRRSEKRKGPEGNLGSALKLIFVISLTNIDIFF 178
           V NSHLFS+GLS +DQPDE KKLPKPRQ  S+KRK PE                      
Sbjct: 173 VLNSHLFSSGLSSHDQPDEFKKLPKPRQHSSQKRKAPE---------------------- 232

Query: 179 EMASKFLALNSGNWQHASTWTAPPA 198
           EMASKFLAL+S   Q AS  + PPA
Sbjct: 233 EMASKFLALSSTKRQRASAPSIPPA 235

The following BLAST results are available for this feature:

BLAST of MC07g_new0237 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0237 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154107.1	1.81e-33	53.79	caffeic acid 3-O-methyltransferase-like [Momordica charantia]	[more]

BLAST of MC07g_new0237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKS4	8.78e-34	53.79	caffeic acid 3-O-methyltransferase-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of MC07g_new0237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0237.1	MC07g_new0237.1	mRNA