MC07g_new0005.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0005.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC07: 171171 .. 172297 (-)
Sequence length	186
RNA-Seq Expression	MC07g_new0005.1
Synteny	MC07g_new0005.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACAACAATATTTCATCACTATTTTCTTCATAAACCACAATTGCATTTTGAACCATTCACTTCTTTAAAACACCTTTGAAAAGTACAAGTCATTGAGGATTCAACCTTGGATTACTCCCAAGTATTACTTGTCACGGTGTAAACTTACACGTGTCTCTTATCTTTTGAAGGTAGAGAAAGTTCCAACAAGTTTTTGGCACCATTGTCGGGGTGTTAATTTTCAAAATCATTTTCTTTTTAAGTGAATTGTTTCATATTGTGATTGTTCCATACCTTTGTTCCATGAGATTAATTTCTTATATCTAACCTTAAAATGACAATTTTTTTAGCACATAGGAGTCCCTAAGGAGGTTAAGGGGAGAACAAAGGTCAAGAAAACAAAAGGAAAACTGAAAAAGAGAAGGAAATGAAAAAAGAAATGAGAGATTACTTGCACTGAGCCAACAACAAGCAGGAGTGTTTGAAATGAAGTCTCAATTTATGTATATTTCATCCATATGAGCATGCATTCCCACTAGAATTCCCAACACAACCTCAACATGAGTATGAACAATCGTGGATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGAAGCAAGCTTGAATATGGCTGTAAGAACCCATTTGTTGTTGATTTCTAAAAATGGAAAAAATATATATTTATTGGAATTGTTGGAGTTAATAAAGGCATTTTGGTCTTTTGGCAACAAAAAAAAAGACAAAAAAAAAAAGAAAAGAAAAGAAAAGAAATATGAGTTTTTTTTTAGGTGATATGTGTGTTGGTGGGATGTGGTGTGTGTGACAGATGTTTTAACAAAAAGAAAAGATAAGAAAAGGAAATGAAATGAAAAGGAAAAAAAAGGAAAAAGGAAGGTAAATAGCGGAGAGAGAAAACTGAAGGAGAAGAACGAAATGAAAACGAGGGTTTGAAGGAAGAAAAAAAAAACAGAGAAAAAAGGAAAGAACAGAAGAG

mRNA sequence

ATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGA

Coding sequence (CDS)

ATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGA

Protein sequence

MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNNEQGEAIKV

Homology

[Close]

BLAST of MC07g_new0005.1 vs. NCBI nr
Match: XP_022157694.1 (uncharacterized protein LOC111024352 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.18e-11
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNN--EQGEA 59
          MP+Q   LE+ SLE+TMID   R D ++RRLQI++E M+DE RNSP EALP N  EQGEA
Sbjct: 1  MPEQTHLLEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEA 60

[Close]

BLAST of MC07g_new0005.1 vs. ExPASy TrEMBL
Match: A0A6J1DXA5 (uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024352 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.71e-12
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNN--EQGEA 59
          MP+Q   LE+ SLE+TMID   R D ++RRLQI++E M+DE RNSP EALP N  EQGEA
Sbjct: 1  MPEQTHLLEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEA 60

The following BLAST results are available for this feature:

BLAST of MC07g_new0005.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g_new0005.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157694.1	1.18e-11	60.66	uncharacterized protein LOC111024352 [Momordica charantia]	[more]

BLAST of MC07g_new0005.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXA5	5.71e-12	60.66	uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MC07g_new0005.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC07g_new0005	MC07g_new0005	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC07g_new0005.1-cds	MC07g_new0005.1-cds-MC07:171551..171736	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC07g_new0005.1	MC07g_new0005.1-protein	polypeptide