MC07g_new0005 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC07g_new0005
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC07: 171171 .. 172297 (-)
RNA-Seq ExpressionMC07g_new0005
SyntenyMC07g_new0005
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACAACAATATTTCATCACTATTTTCTTCATAAACCACAATTGCATTTTGAACCATTCACTTCTTTAAAACACCTTTGAAAAGTACAAGTCATTGAGGATTCAACCTTGGATTACTCCCAAGTATTACTTGTCACGGTGTAAACTTACACGTGTCTCTTATCTTTTGAAGGTAGAGAAAGTTCCAACAAGTTTTTGGCACCATTGTCGGGGTGTTAATTTTCAAAATCATTTTCTTTTTAAGTGAATTGTTTCATATTGTGATTGTTCCATACCTTTGTTCCATGAGATTAATTTCTTATATCTAACCTTAAAATGACAATTTTTTTAGCACATAGGAGTCCCTAAGGAGGTTAAGGGGAGAACAAAGGTCAAGAAAACAAAAGGAAAACTGAAAAAGAGAAGGAAATGAAAAAAGAAATGAGAGATTACTTGCACTGAGCCAACAACAAGCAGGAGTGTTTGAAATGAAGTCTCAATTTATGTATATTTCATCCATATGAGCATGCATTCCCACTAGAATTCCCAACACAACCTCAACATGAGTATGAACAATCGTGGATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGAAGCAAGCTTGAATATGGCTGTAAGAACCCATTTGTTGTTGATTTCTAAAAATGGAAAAAATATATATTTATTGGAATTGTTGGAGTTAATAAAGGCATTTTGGTCTTTTGGCAACAAAAAAAAAGACAAAAAAAAAAAGAAAAGAAAAGAAAAGAAATATGAGTTTTTTTTTAGGTGATATGTGTGTTGGTGGGATGTGGTGTGTGTGACAGATGTTTTAACAAAAAGAAAAGATAAGAAAAGGAAATGAAATGAAAAGGAAAAAAAAGGAAAAAGGAAGGTAAATAGCGGAGAGAGAAAACTGAAGGAGAAGAACGAAATGAAAACGAGGGTTTGAAGGAAGAAAAAAAAAACAGAGAAAAAAGGAAAGAACAGAAGAG

mRNA sequence

ATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGA

Coding sequence (CDS)

ATGCCAAAACAAATGCAATCATTGGAAATTTCTAGCCTTGAAGAGACGATGATAGATTTATGGCAAAGAAATGATGTAGCATTACGTAGGCTGCAGATCGAAATGGAGCAGATGATCGATGAGTCGAGGAATAGTCCACTAGAAGCATTGCCTAACAATGAGCAAGGTGAGGCAATCAAGGTATGA

Protein sequence

MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNNEQGEAIKV
Homology
BLAST of MC07g_new0005 vs. NCBI nr
Match: XP_022157694.1 (uncharacterized protein LOC111024352 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.18e-11
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1  MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNN--EQGEA 59
          MP+Q   LE+ SLE+TMID   R D ++RRLQI++E M+DE RNSP EALP N  EQGEA
Sbjct: 1  MPEQTHLLEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEA 60

BLAST of MC07g_new0005 vs. ExPASy TrEMBL
Match: A0A6J1DXA5 (uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024352 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.71e-12
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1  MPKQMQSLEISSLEETMIDLWQRNDVALRRLQIEMEQMIDESRNSPLEALPNN--EQGEA 59
          MP+Q   LE+ SLE+TMID   R D ++RRLQI++E M+DE RNSP EALP N  EQGEA
Sbjct: 1  MPEQTHLLEVFSLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNMEEQGEA 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022157694.11.18e-1160.66uncharacterized protein LOC111024352 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DXA55.71e-1260.66uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC07g_new0005.1MC07g_new0005.1mRNA