Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAATTAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATGAATGCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC
mRNA sequence
GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAAAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC
Coding sequence (CDS)
GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAAAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC
Protein sequence
VRKEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVKNPLMADKALLRFNDLKKDFINVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI
Homology
BLAST of MC06g1221.1 vs. NCBI nr
Match:
KAA0039949.1 (hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK24554.1 hypothetical protein E5676_scaffold266G00990 [Cucumis melo var. makuwa])
HSP 1 Score: 87.4 bits (215), Expect = 1.24e-16
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 0
Query: 1 VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
+RKE++ + +DW+ +++ R C DDW +I TD + + + + P ADKALL
Sbjct: 209 IRKEEKKNDIDWEKSIILSRRCFHDDWAKIIDRLKDQTDKKDSCFRYI--PFHADKALLF 268
Query: 61 FNDLKKDFI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQ 120
D + + N+ W +G +VK ++ + H+ +V+ Y GW + + L +WN
Sbjct: 269 IKDKELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLN 328
Query: 121 CFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
F IG GG A ++IN L+ +EA I+V ++N FLP I
Sbjct: 329 TFIQIGEACGGFIDAAPESINKLELTEALIKV-KENYTGFLPAFI 370
BLAST of MC06g1221.1 vs. NCBI nr
Match:
TYK05762.1 (cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa])
HSP 1 Score: 82.8 bits (203), Expect = 2.23e-16
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 0
Query: 10 LDWDNLMVIIRFCTRDDWKRITTDLQFNF-HKVVKNPLMADKALLRFNDLKKDFI---NV 69
LDW+ ++V+ R DDW++I L+ H + P ADKAL+ F D ++ + N
Sbjct: 45 LDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDKEQANLICKNK 104
Query: 70 KWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRES 129
W +G +VK +E H+ +VV Y GW+KV + L WN + F IG GG
Sbjct: 105 GWTTVGWFYVKFEEWNQKAHASSKVVPSYGGWIKVRGIPLHAWNLESFIQIGDACGGYID 164
Query: 130 IASKTINLLDCSEAWIQVDQDN 147
+ +T L + EA+I++ +DN
Sbjct: 165 VVRETRELTNLIEAFIRI-KDN 185
BLAST of MC06g1221.1 vs. NCBI nr
Match:
KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 86.7 bits (213), Expect = 2.28e-16
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 0
Query: 3 KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
K + DW+ V+ R DDW+RI L V+ P ADKAL+ F + ++
Sbjct: 190 KSNTTFSFDWERTAVLTRRYFHDDWERIVEKLNEQLDTTVRYKPFHADKALIYFKNEEQA 249
Query: 63 FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
+ N W +G +VK +E H+ +V+ Y GW+KV + L WN + F IG
Sbjct: 250 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 309
Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
GG +A +T L D EA I++ +DN F+P I
Sbjct: 310 ACGGFVEVAKETRELTDIFEASIKI-KDNYTGFIPAYI 346
BLAST of MC06g1221.1 vs. NCBI nr
Match:
KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 3.50e-16
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 0
Query: 3 KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
K + +W+ +V+ R DDW+RI L V+ P ADKAL+ F + ++
Sbjct: 174 KSNTIFSFEWERTVVLTRRFFHDDWERIVEKLNEQLDTTVRYKPFRADKALIYFKNEEQA 233
Query: 63 FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
+ N W +G +VK +E H+ +V+ Y GW+KV + L WN + F IG
Sbjct: 234 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 293
Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
GG +A +T L D EA I++ +DN F+P I
Sbjct: 294 ACGGFVEVAKETRELTDIFEASIKI-KDNYSGFIPAYI 330
BLAST of MC06g1221.1 vs. NCBI nr
Match:
KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])
HSP 1 Score: 85.9 bits (211), Expect = 4.15e-16
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 0
Query: 1 VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
+RKE+ + +DW+ +++ R C DDW +I TD + + + V P ADKALL
Sbjct: 180 IRKEERKNDIDWEKTIILSRRCFHDDWDKIIDRLREQTDKKDSCFRYV--PFHADKALLF 239
Query: 61 FNDLKKDFI-----NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWN 120
D KD N W +G +VK ++ S H+ +V+ Y GW + + L +WN
Sbjct: 240 IKD--KDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPLHIWN 299
Query: 121 NQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
F IG GG A +++N ++ +EA I+V ++N FLP I
Sbjct: 300 LNTFIQIGEACGGFIDAAPESVNKIELTEALIKV-KENYTGFLPAFI 341
BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match:
A0A5D3DLT1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00990 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 6.00e-17
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 0
Query: 1 VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
+RKE++ + +DW+ +++ R C DDW +I TD + + + + P ADKALL
Sbjct: 209 IRKEEKKNDIDWEKSIILSRRCFHDDWAKIIDRLKDQTDKKDSCFRYI--PFHADKALLF 268
Query: 61 FNDLKKDFI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQ 120
D + + N+ W +G +VK ++ + H+ +V+ Y GW + + L +WN
Sbjct: 269 IKDKELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLN 328
Query: 121 CFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
F IG GG A ++IN L+ +EA I+V ++N FLP I
Sbjct: 329 TFIQIGEACGGFIDAAPESINKLELTEALIKV-KENYTGFLPAFI 370
BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match:
A0A5D3C3G6 (Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002510 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.08e-16
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 0
Query: 10 LDWDNLMVIIRFCTRDDWKRITTDLQFNF-HKVVKNPLMADKALLRFNDLKKDFI---NV 69
LDW+ ++V+ R DDW++I L+ H + P ADKAL+ F D ++ + N
Sbjct: 45 LDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDKEQANLICKNK 104
Query: 70 KWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRES 129
W +G +VK +E H+ +VV Y GW+KV + L WN + F IG GG
Sbjct: 105 GWTTVGWFYVKFEEWNQKAHASSKVVPSYGGWIKVRGIPLHAWNLESFIQIGDACGGYID 164
Query: 130 IASKTINLLDCSEAWIQVDQDN 147
+ +T L + EA+I++ +DN
Sbjct: 165 VVRETRELTNLIEAFIRI-KDN 185
BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match:
A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 1.10e-16
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 0
Query: 3 KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
K + DW+ V+ R DDW+RI L V+ P ADKAL+ F + ++
Sbjct: 190 KSNTTFSFDWERTAVLTRRYFHDDWERIVEKLNEQLDTTVRYKPFHADKALIYFKNEEQA 249
Query: 63 FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
+ N W +G +VK +E H+ +V+ Y GW+KV + L WN + F IG
Sbjct: 250 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 309
Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
GG +A +T L D EA I++ +DN F+P I
Sbjct: 310 ACGGFVEVAKETRELTDIFEASIKI-KDNYTGFIPAYI 346
BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match:
A0A5A7TEK8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002490 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.69e-16
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 0
Query: 3 KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
K + +W+ +V+ R DDW+RI L V+ P ADKAL+ F + ++
Sbjct: 174 KSNTIFSFEWERTVVLTRRFFHDDWERIVEKLNEQLDTTVRYKPFRADKALIYFKNEEQA 233
Query: 63 FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
+ N W +G +VK +E H+ +V+ Y GW+KV + L WN + F IG
Sbjct: 234 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 293
Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
GG +A +T L D EA I++ +DN F+P I
Sbjct: 294 ACGGFVEVAKETRELTDIFEASIKI-KDNYSGFIPAYI 330
BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match:
A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 2.01e-16
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 0
Query: 1 VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
+RKE+ + +DW+ +++ R C DDW +I TD + + + V P ADKALL
Sbjct: 180 IRKEERKNDIDWEKTIILSRRCFHDDWDKIIDRLREQTDKKDSCFRYV--PFHADKALLF 239
Query: 61 FNDLKKDFI-----NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWN 120
D KD N W +G +VK ++ S H+ +V+ Y GW + + L +WN
Sbjct: 240 IKD--KDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPLHIWN 299
Query: 121 NQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
F IG GG A +++N ++ +EA I+V ++N FLP I
Sbjct: 300 LNTFIQIGEACGGFIDAAPESVNKIELTEALIKV-KENYTGFLPAFI 341
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0039949.1 | 1.24e-16 | 31.52 | hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK245... | [more] |
TYK05762.1 | 2.23e-16 | 33.80 | cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. mak... | [more] |
KAA0040039.1 | 2.28e-16 | 32.91 | hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa] | [more] |
KAA0039967.1 | 3.50e-16 | 32.28 | hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa] | [more] |
KAA0044557.1 | 4.15e-16 | 32.34 | hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3DLT1 | 6.00e-17 | 31.52 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3C3G6 | 1.08e-16 | 33.80 | Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. m... | [more] |
A0A5A7TFK7 | 1.10e-16 | 32.91 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7TEK8 | 1.69e-16 | 32.28 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7TRS9 | 2.01e-16 | 32.34 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |