MC06g1221.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC06g1221.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDUF4283 domain-containing protein
LocationMC06: 16818350 .. 16818824 (+)
Sequence length468
RNA-Seq ExpressionMC06g1221.1
SyntenyMC06g1221.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAATTAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATGAATGCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC

mRNA sequence

GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAAAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC

Coding sequence (CDS)

GTTAGGAAAGAAGATGAAGCTTCAAAGTTGGATTGGGATAACCTTATGGTTATCATAAGGTTTTGTACTCGTGATGATTGGAAGAGAATCACAACCGATTTACAATTCAACTTTCACAAAGTTGTCAAAAACCCTTTAATGGCAGACAAAGCCTTGCTAAGGTTCAATGATCTGAAGAAAGACTTTATCAATGTAAAATGGCATAAGTTAGGAGCTTCTCATGTGAAAATTGATGAAGGGTGTTTTAGCAAACACAGCAAGAAGGAGGTGGTTCTTGGGTATGAAGGTTGGGTGAAAGTTTGTGACTTACTTCTAGAATTATGGAATAATCAGTGTTTCAAGGCTATTGGATCTCATCTTGGAGGTCGGGAGAGTATAGCATCAAAAACCATTAATTTATTGGATTGCTCAGAAGCTTGGATTCAAGTAGATCAAGACAATTGTTGTGAGTTTTTACCTACCTCGATC

Protein sequence

VRKEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVKNPLMADKALLRFNDLKKDFINVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI
Homology
BLAST of MC06g1221.1 vs. NCBI nr
Match: KAA0039949.1 (hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK24554.1 hypothetical protein E5676_scaffold266G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.24e-16
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 0

Query: 1   VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
           +RKE++ + +DW+  +++ R C  DDW +I       TD + +  + +  P  ADKALL 
Sbjct: 209 IRKEEKKNDIDWEKSIILSRRCFHDDWAKIIDRLKDQTDKKDSCFRYI--PFHADKALLF 268

Query: 61  FNDLKKDFI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQ 120
             D +   +   N+ W  +G  +VK ++   + H+  +V+  Y GW +   + L +WN  
Sbjct: 269 IKDKELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLN 328

Query: 121 CFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
            F  IG   GG    A ++IN L+ +EA I+V ++N   FLP  I
Sbjct: 329 TFIQIGEACGGFIDAAPESINKLELTEALIKV-KENYTGFLPAFI 370

BLAST of MC06g1221.1 vs. NCBI nr
Match: TYK05762.1 (cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.23e-16
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 0

Query: 10  LDWDNLMVIIRFCTRDDWKRITTDLQFNF-HKVVKNPLMADKALLRFNDLKKDFI---NV 69
           LDW+ ++V+ R    DDW++I   L+    H +   P  ADKAL+ F D ++  +   N 
Sbjct: 45  LDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDKEQANLICKNK 104

Query: 70  KWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRES 129
            W  +G  +VK +E     H+  +VV  Y GW+KV  + L  WN + F  IG   GG   
Sbjct: 105 GWTTVGWFYVKFEEWNQKAHASSKVVPSYGGWIKVRGIPLHAWNLESFIQIGDACGGYID 164

Query: 130 IASKTINLLDCSEAWIQVDQDN 147
           +  +T  L +  EA+I++ +DN
Sbjct: 165 VVRETRELTNLIEAFIRI-KDN 185

BLAST of MC06g1221.1 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 2.28e-16
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 0

Query: 3   KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
           K +     DW+   V+ R    DDW+RI   L       V+  P  ADKAL+ F + ++ 
Sbjct: 190 KSNTTFSFDWERTAVLTRRYFHDDWERIVEKLNEQLDTTVRYKPFHADKALIYFKNEEQA 249

Query: 63  FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
            +   N  W  +G  +VK +E     H+  +V+  Y GW+KV  + L  WN + F  IG 
Sbjct: 250 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 309

Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
             GG   +A +T  L D  EA I++ +DN   F+P  I
Sbjct: 310 ACGGFVEVAKETRELTDIFEASIKI-KDNYTGFIPAYI 346

BLAST of MC06g1221.1 vs. NCBI nr
Match: KAA0039967.1 (hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.50e-16
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 0

Query: 3   KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
           K +     +W+  +V+ R    DDW+RI   L       V+  P  ADKAL+ F + ++ 
Sbjct: 174 KSNTIFSFEWERTVVLTRRFFHDDWERIVEKLNEQLDTTVRYKPFRADKALIYFKNEEQA 233

Query: 63  FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
            +   N  W  +G  +VK +E     H+  +V+  Y GW+KV  + L  WN + F  IG 
Sbjct: 234 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 293

Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
             GG   +A +T  L D  EA I++ +DN   F+P  I
Sbjct: 294 ACGGFVEVAKETRELTDIFEASIKI-KDNYSGFIPAYI 330

BLAST of MC06g1221.1 vs. NCBI nr
Match: KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 4.15e-16
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 1   VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
           +RKE+  + +DW+  +++ R C  DDW +I       TD + +  + V  P  ADKALL 
Sbjct: 180 IRKEERKNDIDWEKTIILSRRCFHDDWDKIIDRLREQTDKKDSCFRYV--PFHADKALLF 239

Query: 61  FNDLKKDFI-----NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWN 120
             D  KD       N  W  +G  +VK ++   S H+  +V+  Y GW +   + L +WN
Sbjct: 240 IKD--KDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPLHIWN 299

Query: 121 NQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
              F  IG   GG    A +++N ++ +EA I+V ++N   FLP  I
Sbjct: 300 LNTFIQIGEACGGFIDAAPESVNKIELTEALIKV-KENYTGFLPAFI 341

BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match: A0A5D3DLT1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00990 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.00e-17
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 0

Query: 1   VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
           +RKE++ + +DW+  +++ R C  DDW +I       TD + +  + +  P  ADKALL 
Sbjct: 209 IRKEEKKNDIDWEKSIILSRRCFHDDWAKIIDRLKDQTDKKDSCFRYI--PFHADKALLF 268

Query: 61  FNDLKKDFI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQ 120
             D +   +   N+ W  +G  +VK ++   + H+  +V+  Y GW +   + L +WN  
Sbjct: 269 IKDKELANLLCKNIGWTTVGPFYVKFEKWSKNAHADTKVIPSYGGWTRFRGIPLHIWNLN 328

Query: 121 CFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
            F  IG   GG    A ++IN L+ +EA I+V ++N   FLP  I
Sbjct: 329 TFIQIGEACGGFIDAAPESINKLELTEALIKV-KENYTGFLPAFI 370

BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match: A0A5D3C3G6 (Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002510 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.08e-16
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 0

Query: 10  LDWDNLMVIIRFCTRDDWKRITTDLQFNF-HKVVKNPLMADKALLRFNDLKKDFI---NV 69
           LDW+ ++V+ R    DDW++I   L+    H +   P  ADKAL+ F D ++  +   N 
Sbjct: 45  LDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDKEQANLICKNK 104

Query: 70  KWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGSHLGGRES 129
            W  +G  +VK +E     H+  +VV  Y GW+KV  + L  WN + F  IG   GG   
Sbjct: 105 GWTTVGWFYVKFEEWNQKAHASSKVVPSYGGWIKVRGIPLHAWNLESFIQIGDACGGYID 164

Query: 130 IASKTINLLDCSEAWIQVDQDN 147
           +  +T  L +  EA+I++ +DN
Sbjct: 165 VVRETRELTNLIEAFIRI-KDN 185

BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.10e-16
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 0

Query: 3   KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
           K +     DW+   V+ R    DDW+RI   L       V+  P  ADKAL+ F + ++ 
Sbjct: 190 KSNTTFSFDWERTAVLTRRYFHDDWERIVEKLNEQLDTTVRYKPFHADKALIYFKNEEQA 249

Query: 63  FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
            +   N  W  +G  +VK +E     H+  +V+  Y GW+KV  + L  WN + F  IG 
Sbjct: 250 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 309

Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
             GG   +A +T  L D  EA I++ +DN   F+P  I
Sbjct: 310 ACGGFVEVAKETRELTDIFEASIKI-KDNYTGFIPAYI 346

BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match: A0A5A7TEK8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002490 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.69e-16
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 0

Query: 3   KEDEASKLDWDNLMVIIRFCTRDDWKRITTDLQFNFHKVVK-NPLMADKALLRFNDLKKD 62
           K +     +W+  +V+ R    DDW+RI   L       V+  P  ADKAL+ F + ++ 
Sbjct: 174 KSNTIFSFEWERTVVLTRRFFHDDWERIVEKLNEQLDTTVRYKPFRADKALIYFKNEEQA 233

Query: 63  FI---NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWNNQCFKAIGS 122
            +   N  W  +G  +VK +E     H+  +V+  Y GW+KV  + L  WN + F  IG 
Sbjct: 234 KLLCKNKGWTTVGRFYVKFEEWSQKTHASPKVIPSYGGWIKVRGVPLHAWNLESFIQIGD 293

Query: 123 HLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
             GG   +A +T  L D  EA I++ +DN   F+P  I
Sbjct: 294 ACGGFVEVAKETRELTDIFEASIKI-KDNYSGFIPAYI 330

BLAST of MC06g1221.1 vs. ExPASy TrEMBL
Match: A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.01e-16
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 1   VRKEDEASKLDWDNLMVIIRFCTRDDWKRIT------TDLQFNFHKVVKNPLMADKALLR 60
           +RKE+  + +DW+  +++ R C  DDW +I       TD + +  + V  P  ADKALL 
Sbjct: 180 IRKEERKNDIDWEKTIILSRRCFHDDWDKIIDRLREQTDKKDSCFRYV--PFHADKALLF 239

Query: 61  FNDLKKDFI-----NVKWHKLGASHVKIDEGCFSKHSKKEVVLGYEGWVKVCDLLLELWN 120
             D  KD       N  W  +G  +VK ++   S H+  +V+  Y GW +   + L +WN
Sbjct: 240 IKD--KDLAKLLCKNNGWTTVGPFYVKFEKWSKSAHADTKVIPSYGGWTRFRGIPLHIWN 299

Query: 121 NQCFKAIGSHLGGRESIASKTINLLDCSEAWIQVDQDNCCEFLPTSI 156
              F  IG   GG    A +++N ++ +EA I+V ++N   FLP  I
Sbjct: 300 LNTFIQIGEACGGFIDAAPESVNKIELTEALIKV-KENYTGFLPAFI 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0039949.11.24e-1631.52hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa] >TYK245... [more]
TYK05762.12.23e-1633.80cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. mak... [more]
KAA0040039.12.28e-1632.91hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa][more]
KAA0039967.13.50e-1632.28hypothetical protein E6C27_scaffold122G002490 [Cucumis melo var. makuwa][more]
KAA0044557.14.15e-1632.34hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3DLT16.00e-1731.52DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3C3G61.08e-1633.80Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. m... [more]
A0A5A7TFK71.10e-1632.91DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TEK81.69e-1632.28DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TRS92.01e-1632.34DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC06g1221MC06g1221gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC06g1221.1-cdsMC06g1221.1-cds-MC06:16818350..16818478CDS
MC06g1221.1-cdsMC06g1221.1-cds-MC06:16818481..16818522CDS
MC06g1221.1-cdsMC06g1221.1-cds-MC06:16818528..16818824CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC06g1221.1MC06g1221.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity