MC02g0888.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0888.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S12
Location	MC02: 7029162 .. 7031492 (+)
Sequence length	939
RNA-Seq Expression	MC02g0888.1
Synteny	MC02g0888.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAACCCCAGCCAATTATTTGCTAAACTGATATTATGGTTCGACATAGATTATGGTAAAAAACCGAACCAAACCGGAGTTCTCACTAGAAATTAGGGTTTTTCCATCAGTGCATAAAATCAAATCTCTGCTACATAAAAAACCTCACTTCTTCCTGACCTAATTCCCTGCGCCCGTTAATATCTCGATCGGTTTCTACGCTGTTCGCAAGTCGTCTCCTACCTCTATGCCTCTTCCCTTCTTCTTCTTCTTGTATTTCTTTGTTCAAATTGTATGTCCCTTTTGTCTAATTATTCTTTTGCTGTTTTTTGCAACAGGAAGGAAAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGGGTAAGTGAAATTTTGTATATTGAACAAGCTTTCAACTTCCCTGATAATTCCCATTTCTTTTGTGAAAATTATCGAAGTGGTTGTTTATATTTTCTGAGTTATTGAACAGTTGCCTCTTCTTTCGTTTTTGTTTGCTTCCTTTTCAGTATTTAGTTATCGACGATGCCCTGGTTTTTTGTTTTATTTTAAAGTTGAATCTGCAGCTTGTAATCAACTATTCGAGTGCTCACTGTTCTAGAGTGTGGATAAGTAAGAAGTTGTAAGTGGAAACTTCATTGACGAAGGTGACGAAACAATAAATCTTTTTCCCTTGAGATGAAAATTATATGCTTTGGGCTTTTGGGTCATATATAATATTGAACTTTGAAGTTCAATATGTGATTCGTAACATCATTTCATTGGGGATTGAAAAATAGTTACTGAGCAGCCAAGATCCCTGTGTGATTTGTAACATCCTAGAAGTGAAAAGCTATTGAGGCTTCTTCTGTTAGTGGCTTAATATTTGCTGCAATGTTTATATAATTTTCTTCAATTGCTTCAAAGAATTATGCCATAGAGTAATATTATATTCCCTCTCAACCTTATTTCGTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTGTAAGTGATTTTTTTAACAAGATATAGAGCTTTTCATTGATAAATGATAATAAACAAAAATGTTTAAAAGATATGAACTCCGGGAGGAGTAAAAAGAGGAAAAAAACGGAAAGCATAGTAAAGCTAGGCTGGACTAGAGATATAAAAACATCCCAATTAATACAAATACCATTGTAGATAGCAAACTAACTCCAATGTAAATTTTAAGCATGTTTATTGAGATTAAATGGTTTATCTTATCTTTTGCTTTTTTCCCATCATCTCTGGCATCACTATATAAATATACCATAGTTATTCTACCATGATTGAACCTATGACTTTTGACGTTTAGTTAGTGTTTTACATGCTCGAGATCATATAAAGATGATCTCGAGCATGTAAAATGCATAGAAATCTTCATTTTCCTCCTAACATGTCTTGCTATCAATACCATTGTGAAAGTTTGTTATTGCCTCTAATATTTGCATTCTACACCATCTGTTGAGTTCGATAACAAGGTGTGATTAATATACATATAACAATATTACTTGCAAAAGATTGCTCATATGGAGTTCAAAGTTAAGTAATTTTCTTTGTATTCGGTATAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGTACGCTTATGATCACTTCGAGAGAAAATGTTCTATTCCTTTTTTGTTTGCAAAATGTCGTTTTTGTTTACTTTAATTTTGAATGTGTTATTCCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGTTGATTATCTCAATCGTGTTTGTTGGTCTCACTAAGAAAGTTTTTGATCTTTAGTTTTGTTTAGGTTGGTTCCCTGTTGCTCTGCTGAACACGTTTACCCTACAATGTTTTTCTTTGTTTATTTATTGGAAAGATTTCTGGCAAACAGAACAATTTATTCATCAAGAGTCTCCTTGCCAAGGGTAAGAGGGAATTGAATTTTAACATCTCCTTATGCTGAGTTATTATGGTTTACCTCTTTTCATTCTCTTTGGAGATTAATGCAACAGTCTCGTGG

mRNA sequence

ATTAACCCCAGCCAATTATTTGCTAAACTGATATTATGGTTCGACATAGATTATGGTAAAAAACCGAACCAAACCGGAGTTCTCACTAGAAATTAGGGTTTTTCCATCAGTGCATAAAATCAAATCTCTGCTACATAAAAAACCTCACTTCTTCCTGACCTAATTCCCTGCGCCCGTTAATATCTCGATCGGTTTCTACGCTGTTCGCAAGAAGGAAAAAAGAACTTCAAATCAAGAAGAAAAATGTCAGGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGTTGATTATCTCAATCGTGTTTGTTGGTCTCACTAAGAAAGTTTTTGATCTTTAGTTTTGTTTAGGTTGGTTCCCTGTTGCTCTGCTGAACACGTTTACCCTACAATGTTTTTCTTTGTTTATTTATTGGAAAGATTTCTGGCAAACAGAACAATTTATTCATCAAGAGTCTCCTTGCCAAGGGTAAGAGGGAATTGAATTTTAACATCTCCTTATGCTGAGTTATTATGGTTTACCTCTTTTCATTCTCTTTGGAGATTAATGCAACAGTCTCGTGG

Coding sequence (CDS)

ATGTCAGGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCATCACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGTTGA

Protein sequence

MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

[Close]

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.7e-55
Identity = 101/129 (78.29%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 11  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDY 70
           EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDY
Sbjct: 14  EAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDY 73

Query: 71  VKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEAL 130
           VKLVKALC EH+V L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L
Sbjct: 74  VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGL 133

Query: 131 HIVQKHVSS 140
           +IVQ++V S
Sbjct: 134 NIVQQYVKS 142

[Close]

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-51
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.2e-50
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of MC02g0888.1 vs. NCBI nr
Match: XP_022146157.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 283 bits (723), Expect = 4.44e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MC02g0888.1 vs. NCBI nr
Match: XP_022152391.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 275 bits (703), Expect = 4.99e-93
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (698), Expect = 2.89e-92
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273 bits (697), Expect = 4.11e-92
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MC02g0888.1 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 272 bits (696), Expect = 5.83e-92
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL
Match: A0A6J1CYT4 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV=1)

HSP 1 Score: 283 bits (723), Expect = 2.15e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL
Match: A0A6J1DHK5 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV=1)

HSP 1 Score: 275 bits (703), Expect = 2.42e-93
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSGDEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSGDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.40e-92
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.40e-92
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL
Match: A0A1S3C6L3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 273 bits (698), Expect = 1.40e-92
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSGDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALC EH+V+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 140
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MC02g0888.1 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of MC02g0888.1 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of MC02g0888.1 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALC +H + L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of MC02g0888.1 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.7 bits (504), Expect = 3.0e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MC02g0888.1 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.7 bits (504), Expect = 3.0e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSGDEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MSGDE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of MC02g0888.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	9.7e-55	78.29	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	2.9e-51	68.75	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	4.2e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	4.5e-36	57.02	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	4.5e-36	57.02	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of MC02g0888.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146157.1	4.44e-96	100.00	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_022152391.1	4.99e-93	97.14	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_004147008.1	2.89e-92	96.43	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_023512603.1	4.11e-92	96.43	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986724.1	5.83e-92	96.43	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of MC02g0888.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYT4	2.15e-96	100.00	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV...	[more]
A0A6J1DHK5	2.42e-93	97.14	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV...	[more]
A0A5D3BJY5	1.40e-92	96.43	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	1.40e-92	96.43	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A1S3C6L3	1.40e-92	96.43	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]

BLAST of MC02g0888.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	2.1e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	2.1e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	2.1e-52	68.75	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	3.0e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	3.0e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 8..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 2.9E-26 score: 91.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 8..140 e-value: 3.5E-53 score: 180.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 8..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC02g0888	MC02g0888	gene

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g0888.1-utr5	MC02g0888.1-utr5-MC02:7029162..7029371	utr5
MC02g0888.1-utr5	MC02g0888.1-utr5-MC02:7029479..7029511	utr5

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g0888.1-cds	MC02g0888.1-cds-MC02:7029512..7029519	CDS
MC02g0888.1-cds	MC02g0888.1-cds-MC02:7030116..7030404	CDS
MC02g0888.1-cds	MC02g0888.1-cds-MC02:7030997..7031062	CDS
MC02g0888.1-cds	MC02g0888.1-cds-MC02:7031160..7031219	CDS

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g0888.1-utr3	MC02g0888.1-utr3-MC02:7031220..7031492	utr3

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC02g0888.1	MC02g0888.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome