MC01g0761.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC01g0761.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 13733183 .. 13733311 (+)
Sequence length129
RNA-Seq ExpressionMC01g0761.1
SyntenyMC01g0761.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAAC

mRNA sequence

GGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAAC

Coding sequence (CDS)

GGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAAC

Protein sequence

GRTLSEAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN
Homology
BLAST of MC01g0761.1 vs. NCBI nr
Match: EEF45979.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 3.81e-18
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 4  LSEAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          LS+AKGHGEIPSVIHGSPIGKPYPSSVASLRSLDF NLAN
Sbjct: 2  LSKAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFENLAN 41

BLAST of MC01g0761.1 vs. NCBI nr
Match: QCD89736.1 (hypothetical protein DEO72_LG4g682 [Vigna unguiculata])

HSP 1 Score: 67.8 bits (164), Expect = 5.11e-13
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 1   GRTLSEAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDF 38
           GRTLSE KGHG+IP VI+GSPIGKPYPS  ASLRSLDF
Sbjct: 78  GRTLSEMKGHGDIPFVINGSPIGKPYPSFAASLRSLDF 115

BLAST of MC01g0761.1 vs. NCBI nr
Match: KAG2481391.1 (hypothetical protein PVAP13_J669501 [Panicum virgatum] >KAG2644198.1 hypothetical protein PVAP13_2KG298115 [Panicum virgatum] >PUZ39190.1 hypothetical protein GQ55_9G265900 [Panicum hallii var. hallii] >PUZ39240.1 hypothetical protein GQ55_9G270900 [Panicum hallii var. hallii] >PVH38855.1 hypothetical protein PAHAL_5G370900 [Panicum hallii])

HSP 1 Score: 63.2 bits (152), Expect = 7.59e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 11 GEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          GE  SVIHGSPIGKPYPSSVASLRSLDFSNLAN
Sbjct: 22 GERASVIHGSPIGKPYPSSVASLRSLDFSNLAN 54

BLAST of MC01g0761.1 vs. NCBI nr
Match: PUZ44709.1 (hypothetical protein GQ55_8G132700 [Panicum hallii var. hallii])

HSP 1 Score: 59.7 bits (143), Expect = 2.90e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 11 GEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          GE  SVIHGSPIGKPYPSSVASLRSL FSNLAN
Sbjct: 42 GERASVIHGSPIGKPYPSSVASLRSLYFSNLAN 74

BLAST of MC01g0761.1 vs. ExPASy TrEMBL
Match: B9RRJ3 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1644140 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.85e-18
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0

Query: 4  LSEAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          LS+AKGHGEIPSVIHGSPIGKPYPSSVASLRSLDF NLAN
Sbjct: 2  LSKAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFENLAN 41

BLAST of MC01g0761.1 vs. ExPASy TrEMBL
Match: A0A4D6LNE6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g682 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.47e-13
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 1   GRTLSEAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDF 38
           GRTLSE KGHG+IP VI+GSPIGKPYPS  ASLRSLDF
Sbjct: 78  GRTLSEMKGHGDIPFVINGSPIGKPYPSFAASLRSLDF 115

BLAST of MC01g0761.1 vs. ExPASy TrEMBL
Match: A0A2T7C769 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G265900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.67e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 11 GEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          GE  SVIHGSPIGKPYPSSVASLRSLDFSNLAN
Sbjct: 22 GERASVIHGSPIGKPYPSSVASLRSLDFSNLAN 54

BLAST of MC01g0761.1 vs. ExPASy TrEMBL
Match: A0A2T8IME8 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_5G370900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.67e-12
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 11 GEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          GE  SVIHGSPIGKPYPSSVASLRSLDFSNLAN
Sbjct: 22 GERASVIHGSPIGKPYPSSVASLRSLDFSNLAN 54

BLAST of MC01g0761.1 vs. ExPASy TrEMBL
Match: A0A2T7CMY0 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G132700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.40e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 11 GEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 43
          GE  SVIHGSPIGKPYPSSVASLRSL FSNLAN
Sbjct: 42 GERASVIHGSPIGKPYPSSVASLRSLYFSNLAN 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
EEF45979.13.81e-1895.00conserved hypothetical protein [Ricinus communis][more]
QCD89736.15.11e-1384.21hypothetical protein DEO72_LG4g682 [Vigna unguiculata][more]
KAG2481391.17.59e-1293.94hypothetical protein PVAP13_J669501 [Panicum virgatum] >KAG2644198.1 hypothetica... [more]
PUZ44709.12.90e-1090.91hypothetical protein GQ55_8G132700 [Panicum hallii var. hallii][more]
Match NameE-valueIdentityDescription
B9RRJ31.85e-1895.00Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1644140 PE=4 SV=1[more]
A0A4D6LNE62.47e-1384.21Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g682 PE=4 SV=1[more]
A0A2T7C7693.67e-1293.94Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G26590... [more]
A0A2T8IME83.67e-1293.94Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_5G370900 PE=4 SV=1[more]
A0A2T7CMY01.40e-1090.91Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G13270... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC01g0761MC01g0761gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC01g0761.1-cdsMC01g0761.1-cds-MC01:13733183..13733311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC01g0761.1MC01g0761.1-proteinpolypeptide