MC00g_new0684.1 (mRNA) Bitter gourd (Dali-11) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGGTGAGCTCGTCGTTGCTGAATCCGAATTAGACTTATGCTCCCTTGAGTATTGAGGATCCGGGTAATTCAAAGTCTATCTCTGTCTATATACATATGTGCATGATGTGTGCTGGTATATGTGAATTTGATCCAAATCTCTTTTTTCAGTCTAAATCTTGAGAATTTAATGATGGAAAGTGAAATGTGGTTTGTGATGGTTTCGGTGTGGTAAGATCTTGTCTAAATTGAGATTTAGTGCCAGTTAGCAGTTACCATTTTCATGGAAGAAGGGGATGAGAAAATTGGATATGTAGGTGATTAAGGTTTGGAGTAGAGAGATGCGGAATTGGGTTGGTTCAAGAAGTGTTAAATTACCATTATAGAATCAAAGGACGCATTTTGCACAATTATGGTGGAATAACCGAGGGAACTAAGGGACCATTAAGTATAGAAGGAATGCATAGAAATTTGAAGAATGTCTGGTTTCTCTTTTGGTTATGATTACAAATTTCATCTCTAGCTGTGTATGTTTAATGCTTGAAATTTTAGAAGTTGGCATTATGTCTTGAGATTATGGCTGGAATTATGTATTGTGTCTATGCACAAATGTTGATTGGTTTAGCATGAGACGATTGACAAATAACCAAAAGGAAGTGAACATGTGGACAAAAATAGAAGGATACAATTAGTTAACAGTGTTATGGCAGAACTTGAATGAATTATGAGTTAAAAATTCAAGGCAGCAATTGAAAATCTTGTAAAGTTTGTATATATAAATAGACACATACATATAAGTTCTAAGTTCAATGACTAAACTTGTAATTGTTATTTTGCTAAAATCCCGCCCATATCATTATGTTATTGGCTTATGAGTTATTTCTTTGTTTATTAATGTAGTAAGAGTGCTCATACCGTGGGTCTGCCTCCAGCTTGGGTTGAAGTATCCGAAGAAATAGCTGCAAATGTGCAATGTGCATGAACGAAGATGATGAAGTTAGCTAAAGTTCATGCAAAGGCTTTAATGCCTTCATTAGTTTCTTCTCATTAGTTCCTCTATTCTGTCTCATTTTCCTTGATGGTTTTTCCACTGTCGGTTTTTCAGGTGACCCTTATGTTCTTTTATGACTTCCCCTCAGTCATTCCCATACCAATACCTTTTAAACCTTCTATTCCACTTGATGAGAAACTTCAAGGCATGAACACCTTCTTCACTTTTCCATAGCTTGCATTCTTTTTATTTGCCAATTTGATTACAAATTTTCGTGGTTTTGATGACAGCTTGATATACACGACGGCAAAGCTACTGATAAAGGTATGTTTAGATTCAATGTATGTATTTTTGAATTGTCTGGATTTTATTGGGTTATCAAAGATATTCAGCAGCACCTTGGCTTGTGAAAAGTTGTGAGATTAAGATGGAGGATTATTATGGGAATTCGCAGGACTTTTGTGATTTTTATTTTTCATGCAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGGCAAAGCTACTGATAAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGGCAAAGCTACTGATAAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELLDIHDGKATDKENAVVESKVSALKQTPKAAKTSQNAKKRRKSKESHLTQKMKKRRRKMKMATAAVKKHYKIFGVD Homology
BLAST of MC00g_new0684.1 vs. ExPASy Swiss-Prot
Match: O65359 (Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06 Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy Swiss-Prot
Match: Q9SUJ1 (Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2) HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. NCBI nr
Match: XP_022156434.1 (syntaxin-41-like [Momordica charantia]) HSP 1 Score: 81.6 bits (200), Expect = 1.78e-15 Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. NCBI nr
Match: XP_023522691.1 (syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 78.2 bits (191), Expect = 7.38e-15 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. NCBI nr
Match: KAG7030133.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. NCBI nr
Match: XP_022999413.1 (syntaxin-43-like [Cucurbita maxima]) HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. NCBI nr
Match: XP_023545297.1 (syntaxin-43-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy TrEMBL
Match: A0A6J1DTG3 (syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 8.63e-16 Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy TrEMBL
Match: A0A6J1KJM9 (syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.64e-14 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy TrEMBL
Match: A0A6J1G576 (syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.64e-14 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy TrEMBL
Match: A0A6J1C856 (protein RCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111008859 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 5.56e-14 Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. ExPASy TrEMBL
Match: A0A6J1FBL2 (syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 2.17e-13 Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. TAIR 10
Match: AT5G26980.1 (syntaxin of plants 41 ) HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07 Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. TAIR 10
Match: AT5G26980.2 (syntaxin of plants 41 ) HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07 Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. TAIR 10
Match: AT3G05710.1 (syntaxin of plants 43 ) HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0
BLAST of MC00g_new0684.1 vs. TAIR 10
Match: AT3G05710.2 (syntaxin of plants 43 ) HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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