MC00g_new0430.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC00g_new0430.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationscaffold7: 566689 .. 570580 (-)
Sequence length504
RNA-Seq ExpressionMC00g_new0430.1
SyntenyMC00g_new0430.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAATTATAGACAACACTACTTTGTCACTCCTATAAATCGAATGAATGTGTGTTGTGATACGAATCAATTTGTGACCAATTACAAAAGCAAAGCAAAGAAGATTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACACGAGGAGACAAAGATTTCTGAGACCAAAATTCTTTACAATGTTAATTTAATGAGTCAAGAAGAGAATGAAGCAAAGATAGCATGGGAAAAGTTGTCTATTTTGAAAGATGGCACGGAGTACAAAAAAAGTGTGCAGATTGGTGGACAGGTGCCTTTGCAAATTGCACCTCTTAGAAGTTTGTGATGTCAAAGCTTGTCAAATCTCATCGAATGAATGTGTGTTGGGTGATTGTACAATACAACACTATTAAATCTATCAAATTTAGAAGAAGAAATCAATAGGTGAATAGACGTGAACTATGAAAGAGAGTTAAATTGTTGTAGCAATTAAGTAGAGGGAAACTCCATATATATACATGTAGGGGACAGAAAGTTTTGAAACCTATTGAGCTTCCAACGTTCCATTATTAATTCCAATTAAATATAAAATCAATGAAGAAGCAAAGCTTTTATATTCATAACTTACATGGTATTATTATTAAAAATAAAAAAATGGCATGTTTTCAAGATAGTATCTTTTTAATATGAAAATTAATGCAATTGAGCCCATAGTGGAATGTTATTTTATATTCACGTCTACAAATTATTAGTAAAGTACATATATTGTTTGATAAAGAATTTGAACAAAAGTCTGCGAACCTCGTATCAAGTGAAGGATGACCTGGCAGGTGAGCTAGAAGTGTGATGAACTAGGAACCTGCAGAACAGAAAATACTTCGACGTCCAAGTTAGTGAATGGCCGAGCTAGAGGAGAGAGAACATAGTTTCGTGTACCTAAGAATAAAGAGGGAGGTTTCTATTTATAGGCAGAGCTTCCAACAGGACTCCCGACAATGTTTCAACGGTTCTTTAAGGTTCCGGAATCAACGACGTGTTGTCGTGAAACGTGTTGAAGGGATGACCTTACTGAGTGTCCTTTGGTCGATTCGACTGGTTAATTGGGATGCCAACGAACGTGTTGAGACTTTCTCTACCTTAAAAAAGATTAGAGACTCGTGCAATGTCGAACACACGGTCACAAGTAATACTCGGAAGTAATCCAAGGTCGAATCCTCAGGGACTTGTTCCTTTTCAAAATGAAGTAATGCCATGAAATGGTTCAAATATGCAATTGTGAGTTAGGAAGAAAAAATGTGATGAAATGTTGTTGTTTGGGGTTTTAAATATCAAGCAATGTAATAAAACTCAAGCTCTTTGCTTCCTACCTTACTTTTGATGCAAAACATGGAAAACACACTTTGTTGGGAAAATGCACCAGGCGTAATCCTAGCTTTTCTTGGGAAACTGAGTTCTACTCTTTCACTACTGCTTTTGGATGCTGTAGAGACTAGGGTAACATACAATCATATATCTATATGTGATTACAATCTTATAGAATAATTGTCAACTCACATGCAGAAATTTTCTATGCATGTTCTACTTTAAGAATATGTAATCCTTTTTGGCAAATAATGATGGGAAAGAGGTCAAAATCGTGGTCAAACAGACCTACCAACACATGTTTCTGTAGTAAAAAGTCAACCCTAACAGAACGAAAGACGAGTTCGGCTCTACGACTAAACAGGGATTTGACCTGGACGGTAGTTAGCTCGGTCATATTGGATGAGGTCCAAGGTAATGAATCTTAGGTATCGTTAATTTGGAACTAGTCATTAATTTCACCGTATTAGGGACTGCCACGTGTGGTCGATAAGAAATATATATATATATATATATATATGAAATCCTGAAATTTCAAGCATGCATAAAAATAAATACATAATCTAAAAAAAAGTTCATATAAACTCTTAGAATGTTCTATTACATATATCAAATATAAGTTTGATAGTCCTAGGTAAATTTATGAAGCTTGAAAAAGTACATAGATCTAAAAGCCATTTCAAGAAATTCATTGTTCAAAAGATTGATGGATAGACATATCCATAAGAACCCTTGTCTCCTACTTCATCAATTACCAATCATATCAGATGTAGGCCTCCTTAATTAAAATTTAGCTTTTTAACCATATCAATCCACATGTGTACTACATTTAGAGGGATGTGAGGGATGTGATGGACCAGTGTTGATGGATCATTAGAAGACCATTTTCTTTGATAATTACTTCTCCTGATCCGATCCAATCTAGCAACATGAACTTGTGTGGAGCATTTATGGTAACACTTTTTTACCCATAAAAAAATGTCAAACAATAATAAATTTAAATACTAATTGAATACAAAATTATTACATATAGTGTAAAAGATAAATTTACAAGTGTAGAATTTATGTTTACAACTGGAACATGCGTTGATGATGGTACATTTATAGTATTGTTGGAATATTGTTCGCTTGATTTGACCTGTATGTATAAAGTATATTAATAATAGAGTCTAAAACAATAGTTTAAATAAATAAAGAAAGTTAAATAAGTTTACCTTATCCACGAGTAAGGAAGATACCATAGACTTTAACTCATTCATTATTCAACTTCATTTGGTTGAATTGTTCTCGAAGAAATGCAATAGTTTTATCCTTTTGAGTTACTAAAGACAACTTTGATATGGTTTTATCACATGTGCAGTGATTTCCCTAAGCTCTGAAGTAAATAATAGTAGTTTGTAATAGGTGTAGAACTCGTTTCCAGTAGAAGTGTGGGTAACGTCCGATGCTATCTTGAAACTTGTATTTTTATCACCAAAACTAAGGTATAAAACAGGGGGTTGTTCTTAGTCAATATTCTACGCTTTCTTCTCCCTTTTTTCACTCTCCCTGCACCTTTTCACCTCATTCTTTTTCTCTCTAATTCGTTTCCATTTTCTTCACAACTTATGCTGCATTGTAACCTCCTTCTTTTCTCTCTTCTTCGTTTTTGCTTTCCAACTTAATGCATCAAAATTTAAATGTATACATAAATATACATATAAATTATATATTATATATATATATATATATATATTTACTTTTTAATTTTCATAGTTTTAGAAGTCGTTTAACATTATATCGCTTTTTTCTCTTCTATTATTTCATTTAGTGTCTTATTGTCTTCTAATTTTATATGGGGGCTTTGGCAATTTTTGTTGGTAGCCATTTTTGTAAAACGATGTAATTGAAGAAGCTTTGGGACATTGGATTAAAGTTGTAAAATATATATATTTTTTTTGCCTTTAGCTTGAGATGACCACCATGACACATTAATAACTCAATTATAGTAAGATATCAATAAAGTTGAGGCAAGAGATAATAAATTAGATATCAAGACACAAATTAAAATGGTTTAGTCAATTTGGCTTACATCCACTGAAAATCGAGAGAGAGTTTTCTTATTTGTTAGTGTTGACGGTGATTTTTGGTAGAGGGCCACGTGGTACCTGGACAAACAGCCCGGCTTGGGATCCACTCGACTTGAAACGAAAGAACTCGATGCCAGTGCGGTGTCCTGCCTAATACACTCCGACGATCAAGTCAATAATCGAAATATCAATAGGAAAAAGATACCTCAAGTGTTAGTGACAGGTTTTTCACTTACTTGGTGAGGATGGTGGTCCTTCATTTTATAGCCTCAGTTGTCCGACCAGGAAGGACGACGGTTAGAGGTGGTAGGGACGTTGCTCACAGTATGGCTGAACAGAAAGGAGCGCAGTTCCGACAATAGCAGGGTGGCTCCACCACCTGTGCCTTCTGGGTGTGTTGCCCAAAGCTATGGAATGCGCTTGTCGTATCAACAGAGTGTGTTGCTAGCTGCAACCCTGTACGGGGCGTAA

mRNA sequence

ATGTCTAATTATAGACAACACTACTTTGTCACTCCTATAAATCGAATGAATGTGTGTTGTGATACGAATCAATTTGTGACCAATTACAAAAGCAAAGCAAAGAAGATTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACACGAGGAGACAAAGATTTCTGAGACCAAAATTCTTTACAATGTTAATTTAATGAGTCAAGAAGAGAATGAAGCAAAGATAGCATGGGAAAAGTTGTCTATTTTGAAAGATGGCACGGAGTACAAAAAAAGTGTGCAGATTGGTGGACAGCCTCAGTTGTCCGACCAGGAAGGACGACGGTTAGAGGTGGTAGGGACGTTGCTCACAGTATGGCTGAACAGAAAGGAGCGCAGTTCCGACAATAGCAGGGTGGCTCCACCACCTGTGCCTTCTGGGTGTGTTGCCCAAAGCTATGGAATGCGCTTGTCGTATCAACAGAGTGTGTTGCTAGCTGCAACCCTGTACGGGGCGTAA

Coding sequence (CDS)

ATGTCTAATTATAGACAACACTACTTTGTCACTCCTATAAATCGAATGAATGTGTGTTGTGATACGAATCAATTTGTGACCAATTACAAAAGCAAAGCAAAGAAGATTCAAGAGGCTTTCATATTACATCTTCAAAGGCTAGCTAATGCACACGAGGAGACAAAGATTTCTGAGACCAAAATTCTTTACAATGTTAATTTAATGAGTCAAGAAGAGAATGAAGCAAAGATAGCATGGGAAAAGTTGTCTATTTTGAAAGATGGCACGGAGTACAAAAAAAGTGTGCAGATTGGTGGACAGCCTCAGTTGTCCGACCAGGAAGGACGACGGTTAGAGGTGGTAGGGACGTTGCTCACAGTATGGCTGAACAGAAAGGAGCGCAGTTCCGACAATAGCAGGGTGGCTCCACCACCTGTGCCTTCTGGGTGTGTTGCCCAAAGCTATGGAATGCGCTTGTCGTATCAACAGAGTGTGTTGCTAGCTGCAACCCTGTACGGGGCGTAA

Protein sequence

MSNYRQHYFVTPINRMNVCCDTNQFVTNYKSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGTEYKKSVQIGGQPQLSDQEGRRLEVVGTLLTVWLNRKERSSDNSRVAPPPVPSGCVAQSYGMRLSYQQSVLLAATLYGA
Homology
[Close]
BLAST of MC00g_new0430.1 vs. NCBI nr
Match: KAA0067206.1 (hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 9.32e-14
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+L NA  E K  E K LYNV+  SQEE+E K+AWEKL  L+DGT
Sbjct: 292 KRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEEHEIKMAWEKLCSLEDGT 351

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 352 GDEKSVQ 358

[Close]
BLAST of MC00g_new0430.1 vs. NCBI nr
Match: KAA0059666.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.08e-13
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 30   KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
            K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+E K+A EKL  L+DGT
Sbjct: 1196 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMAREKLCNLEDGT 1255

Query: 90   EYKKSVQ 96
              +KSVQ
Sbjct: 1256 GNEKSVQ 1262

[Close]
BLAST of MC00g_new0430.1 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.13e-13
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 30   KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
            K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+E K+A EKL  L+DGT
Sbjct: 1417 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMAREKLCNLEDGT 1476

Query: 90   EYKKSVQ 96
              +KSVQ
Sbjct: 1477 GNEKSVQ 1483

[Close]
BLAST of MC00g_new0430.1 vs. NCBI nr
Match: TYK20861.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 4.81e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+  K+A EKL  L+DGT
Sbjct: 206 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMAREKLCNLEDGT 265

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 266 GNEKSVQ 272

[Close]
BLAST of MC00g_new0430.1 vs. NCBI nr
Match: KAA0065364.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 4.81e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+  K+A EKL  L+DGT
Sbjct: 206 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMAREKLCNLEDGT 265

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 266 GNEKSVQ 272

[Close]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match: A0A5A7VL78 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00080 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.51e-14
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+L NA  E K  E K LYNV+  SQEE+E K+AWEKL  L+DGT
Sbjct: 292 KRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEEHEIKMAWEKLCSLEDGT 351

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 352 GDEKSVQ 358

[Close]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match: A0A5A7UZP1 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001110 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.49e-13
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 30   KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
            K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+E K+A EKL  L+DGT
Sbjct: 1196 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMAREKLCNLEDGT 1255

Query: 90   EYKKSVQ 96
              +KSVQ
Sbjct: 1256 GNEKSVQ 1262

[Close]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.51e-13
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 30   KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
            K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+E K+A EKL  L+DGT
Sbjct: 1417 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMAREKLCNLEDGT 1476

Query: 90   EYKKSVQ 96
              +KSVQ
Sbjct: 1477 GNEKSVQ 1483

[Close]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match: A0A5A7VDK8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00260 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.33e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+  K+A EKL  L+DGT
Sbjct: 206 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMAREKLCNLEDGT 265

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 266 GNEKSVQ 272

[Close]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match: A0A5D3DB73 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00260 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.33e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 30  KSKAKKIQEAFILHLQRLANAHEETKISETKILYNVNLMSQEENEAKIAWEKLSILKDGT 89
           K KAKKIQEAF LH+Q+LANA  ETK  E K LYNV+  SQEE+  K+A EKL  L+DGT
Sbjct: 206 KRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMAREKLCNLEDGT 265

Query: 90  EYKKSVQ 96
             +KSVQ
Sbjct: 266 GNEKSVQ 272

The following BLAST results are available for this feature:
BLAST of MC00g_new0430.1 vs.
Match NameE-valueIdentityDescription
BLAST of MC00g_new0430.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067206.19.32e-1464.18hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa][more]
KAA0059666.13.08e-1365.67Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK26105.13.13e-1365.67F15O4.13 [Cucumis melo var. makuwa][more]
TYK20861.14.81e-1364.18Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0065364.14.81e-1364.18Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VL784.51e-1464.18RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UZP11.49e-1365.67Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DRJ11.51e-1365.67F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ... [more]
A0A5A7VDK82.33e-1364.18Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DB732.33e-1364.18Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MC00g_new0430.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC00g_new0430MC00g_new0430gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC00g_new0430.1-cdsMC00g_new0430.1-cds-scaffold7:566689..566892CDS
MC00g_new0430.1-cdsMC00g_new0430.1-cds-scaffold7:570281..570580CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC00g_new0430.1MC00g_new0430.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity