Lsi10G013500.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013500.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr10: 17724575 .. 17726517 (+)
Sequence length	444
RNA-Seq Expression	Lsi10G013500.1
Synteny	Lsi10G013500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTGATTTGTTCTTGCATTTTGTACAGGTGAATTAGGGCTCCAATTCCAAGGCGAAAAAAAAGAGTAATCGACCTCAAGAAATGAAGTTAGGCTAGAAAAATCCACGGATTCAACCAATCGAGTAATCACAAATTCTCCGCACAGCGGTGGTTGCGGTGAGGGCGGCGGCAGCGGATTCAAGAGGTGCTGTTGTAGAAACCGCAGGCTGATCATACGGCGGTGGTCGGCTTCTTTGAGAAGTAGCTGCCGCCATAGTTGCTCTTGGTCCTCGAAATCCATTGTACGGACGGATTACTCGAAGGAAGCGAATGTGTATTGAAAATGGAGTAAAAATTAAAATGGTTAATTGTGAGATTTGAATGAATCAATATATTTTTAAAAGGTTTAAAAGTTGCAGATGACGGCTCCTTTTCAAGCTATCCTCTTTATCTTATATATATATATATAATTTATTTTTTTTTATAAAAATTGTGGGCATTTGGAATAATGGTTTAAAGATATTATTTTCTAGACCAAATCAATTTTTCAAATGAGTTAAATTACAGTTTAATCAATAATTTTTTTAAAGAATAGTCCAAAATATATATATATATATATATATTAAGGAATAGTCCAATAAATTTTTGAAGGTATTTGATACTAACCTAAAATTTTCATTTTGGTTTAATTGATTTTTGAAATTTTAATTTCATGTCAATAGGACCATGGGATGAGTTCAAACATTTTAAATATAAATTTGAATTTCATCTAATGAAACTCTACTTTGTGTGTTAGTAGAATTATAAATTTGAAAAATTATCAAAATTTAGGGACTAACTAGACACAAACTTCTTAATTAAAGGACTATGAATTTGAGTATATATGTCGATTGAATCGTTATAAATGGTATCAAAGCAACCTGTGTTAGCCAGATCGTGAAGATGTAGGGGAATGTCGGGACCATCAGATTTCAAATCCAAATTTCAAATCTTGGGCTTGGAGTGTCAAATTAGTTGGTCACTAATCATTGAACTTGGTCATCATAGGTGGTAGTCTGATGTCAAATGTGGTGCGAGAGATGATTATTATCATAGGTGTTGGGCAGTCGCCAAAATCGCTATCGTCAGAGTTAAACATTGGAGGGAGGGAGAGAAAAATGGGAAGATCGATATGCAAATTTTTGTTGAAATTGGTAGAGTTAGAGTTATTTAAGATCGTTTTATAGATCCAACAAACTCAACTCAACCACATCAATGCCCCAAATTCCTTAAACTTATATAAGTTTTTTAATATTTATTATTTAAATAAAAACAAGTTTGATGTTTAAGATAAATATTGCAACACCAACAATGTTAAAAATATTAAATTTTGTTAGAGGATATAATATAAAAAAAAAAAAAAAAAAAAAATTACCCATCGAATTAATTCAACAAATTTTAAACTTTCAGTTGGATGAAATTTAAGAAAAATTGATACACCTAACAAGTTAAAATTTGATTTTATCTAAAAAACTGAGTATTTAAAATTTGGATGAAATTTTAATTTTTAATATTTATTTTGTTGTCACTGTCACATAACTTTTGCTTTTTATTGATATTTAAATTTCGAAAAGTATTTTTAAAATCATTAAAAATATATACATACAAGGAGCAGAATATTTTATTAAACACAGTTTCCACCCTCTAGAACTGCACTTTTCCCTATTACCCTATCAGTCCTTCCCTCATTAACCCATCATTTTCGTCGAAATTCGTCGCCGGAACAGCCTCGCCGGAACTCTACTGTTTCGAAACCTAGTTATCAACAGACGGTACGTTTTTCCGGTACACTTGAATGGTATAAAGAAGTTGAAATTTGTGTTTCTGCGTCCATTTCTAGGTTTTCTTCTGCTCGAAAATTTCCACGATCGTCGTTGATTCATTTTATGTGCAAGAGGATAATGATGTCTTCTTTTCTTGA

mRNA sequence

ATGCGGCTAGAAAAATCCACGGATTCAACCAATCGAGTAATCACAAATTCTCCGCACAGCGGTGGTTGCGGTGAGGGCGGCGGCAGCGGATTCAAGAGGTGCTGTTGTAGAAACCGCAGGCTGATCATACGGCGGTGGTCGGCTTCTTTGAGAAGTAGCTGCCGCCATAGTTGCTCTTGGTCCTCGAAATCCATTGTACGGACGGATTACTCGAAGGAAGCGAATTTTCCACCCTCTAGAACTGCACTTTTCCCTATTACCCTATCAGTCCTTCCCTCATTAACCCATCATTTTCGTCGAAATTCGTCGCCGGAACAGCCTCGCCGGAACTCTACTGTTTCGAAACCTAGTTATCAACAGACGGTTTTCTTCTGCTCGAAAATTTCCACGATCGTCGTTGATTCATTTTATGTGCAAGAGGATAATGATGTCTTCTTTTCTTGA

Coding sequence (CDS)

ATGCGGCTAGAAAAATCCACGGATTCAACCAATCGAGTAATCACAAATTCTCCGCACAGCGGTGGTTGCGGTGAGGGCGGCGGCAGCGGATTCAAGAGGTGCTGTTGTAGAAACCGCAGGCTGATCATACGGCGGTGGTCGGCTTCTTTGAGAAGTAGCTGCCGCCATAGTTGCTCTTGGTCCTCGAAATCCATTGTACGGACGGATTACTCGAAGGAAGCGAATTTTCCACCCTCTAGAACTGCACTTTTCCCTATTACCCTATCAGTCCTTCCCTCATTAACCCATCATTTTCGTCGAAATTCGTCGCCGGAACAGCCTCGCCGGAACTCTACTGTTTCGAAACCTAGTTATCAACAGACGGTTTTCTTCTGCTCGAAAATTTCCACGATCGTCGTTGATTCATTTTATGTGCAAGAGGATAATGATGTCTTCTTTTCTTGA

Protein sequence

MRLEKSTDSTNRVITNSPHSGGCGEGGGSGFKRCCCRNRRLIIRRWSASLRSSCRHSCSWSSKSIVRTDYSKEANFPPSRTALFPITLSVLPSLTHHFRRNSSPEQPRRNSTVSKPSYQQTVFFCSKISTIVVDSFYVQEDNDVFFS

Homology

The following BLAST results are available for this feature:

BLAST of Lsi10G013500.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G013500.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G013500.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G013500.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G013500	Lsi10G013500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G013500.1.exon.1	Lsi10G013500.1.exon.1	exon
Lsi10G013500.1.exon.2	Lsi10G013500.1.exon.2	exon
Lsi10G013500.1.exon.3	Lsi10G013500.1.exon.3	exon
Lsi10G013500.1.exon.4	Lsi10G013500.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G013500.1.CDS.1	Lsi10G013500.1.CDS.1	CDS
Lsi10G013500.1.CDS.2	Lsi10G013500.1.CDS.2	CDS
Lsi10G013500.1.CDS.3	Lsi10G013500.1.CDS.3	CDS
Lsi10G013500.1.CDS.4	Lsi10G013500.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G013500.1	Lsi10G013500.1-protein	polypeptide