Lsi10G008620.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008620.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Wound-responsive family protein
Location	chr10: 12792102 .. 12792362 (+)
Sequence length	261
RNA-Seq Expression	Lsi10G008620.1
Synteny	Lsi10G008620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTATCTTGGTCGTCGGATGTGGATGACGGCGAGTGTAGCAGTAGTACAGGGGGCGCAATCGGACGGCCACCACGAGGCGAGCAAAGGAGTAATTTGTCTTCGCCAAAACCTTAGGGTTTCGACTGCGGAAACAACCGCCGTAGATGTCCGGCCAATTTCAAGTGCGAGGAATCACGAGGGAGAGAAGACGAGGAAAGCCGATGGGGAAGAGTCTATTCGACGAGTTATGTACTTGAACTGCTGGGGGCAGGGGTGA

mRNA sequence

ATGAGCTATCTTGGTCGTCGGATGTGGATGACGGCGAGTGTAGCAGTAGTACAGGGGGCGCAATCGGACGGCCACCACGAGGCGAGCAAAGGAGTAATTTGTCTTCGCCAAAACCTTAGGGTTTCGACTGCGGAAACAACCGCCGTAGATGTCCGGCCAATTTCAAGTGCGAGGAATCACGAGGGAGAGAAGACGAGGAAAGCCGATGGGGAAGAGTCTATTCGACGAGTTATGTACTTGAACTGCTGGGGGCAGGGGTGA

Coding sequence (CDS)

ATGAGCTATCTTGGTCGTCGGATGTGGATGACGGCGAGTGTAGCAGTAGTACAGGGGGCGCAATCGGACGGCCACCACGAGGCGAGCAAAGGAGTAATTTGTCTTCGCCAAAACCTTAGGGTTTCGACTGCGGAAACAACCGCCGTAGATGTCCGGCCAATTTCAAGTGCGAGGAATCACGAGGGAGAGAAGACGAGGAAAGCCGATGGGGAAGAGTCTATTCGACGAGTTATGTACTTGAACTGCTGGGGGCAGGGGTGA

Protein sequence

MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETTAVDVRPISSARNHEGEKTRKADGEESIRRVMYLNCWGQG

Homology

[Close]

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL
Match: A0A5A7TY19 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001960 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.9e-26
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MSY--LGRRMWMTASVAVVQGAQSD-GHHEASKGVICLRQNLRVSTAETTAVDVRPISSA 60
          MSY  LGRRMWM ASVAVVQ  QSD GHHEA+KGV+ L Q LRVS+AETTAV++RPISSA
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 RNHEGEK-TRKADGEESIRRVMYLNCWGQG 87
           N EGE   R+A+GEES+RRVMYLNCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL
Match: A0A0A0KAY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G123980 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-17
Identity = 56/91 (61.54%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 1  MSY----LGRRMWMTASVAVVQGAQSD-GHHEASKGVICLRQNLRVSTAETTAVDVRPIS 60
          MSY    LGRRMWMTASVAVVQG QSD GHHEA+KGVI L Q LRV + E          
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLSGE---------- 60

Query: 61 SARNHEGEKTRKADGEESIRRVMYLNCWGQG 87
                 +  R+ADGEES+RRVMYLNCWGQG
Sbjct: 61 -------KIKREADGEESLRRVMYLNCWGQG 74

[Close]

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETTAVDVRPISSARNH 60
          MSYL  R+ M ASVAV QG    GH   S G+  LRQ  R+ ++   + D+RP+SS    
Sbjct: 1  MSYL-NRVGMAASVAVAQGHTEIGHKWKS-GLKSLRQGRRLLSSGENSADLRPLSSLVGS 60

Query: 61 EGEKT--------RKADGEESIRRVMYLNCWGQG 87
          EG  +        R A  E+S+RRVMYLNCWGQG
Sbjct: 61 EGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETTAVDVRPISSARNH 60
          MSYL  R+ M ASVAV QG    GH   S G+  LRQ  R+ ++   + D+RP+SS    
Sbjct: 1  MSYL-NRVGMAASVAVAQGHTEIGHKWKS-GLKSLRQGRRLLSSGENSADLRPLSSLVGS 60

Query: 61 EGEKT--------RKADGEESIRRVMYLNCWGQG 87
          EG  +        R A  E+S+RRVMYLNCWGQG
Sbjct: 61 EGSGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL
Match: A0A2J6L919 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 1  MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETTAVDVRPISSARNH 60
          MSYL  R+WMTA VAVV G  +D  H+   G+   +Q  +  T+ T   D+RP+S   + 
Sbjct: 1  MSYL-NRVWMTAGVAVVNG-HTDQGHKLKSGIKSFQQGKKAFTSSTDPADLRPLSGVVSS 60

Query: 61 E-----GEKTRKADGEESIRRVMYLNCWGQ 86
          +     G + R    ++S+R+VMYLNCWGQ
Sbjct: 61 DVGGFVGGEERMKQSDDSLRQVMYLNCWGQ 88

[Close]

BLAST of Lsi10G008620.1 vs. NCBI nr
Match: KAA0047914.1 (wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 1  MSY--LGRRMWMTASVAVVQGAQSD-GHHEASKGVICLRQNLRVSTAETTAVDVRPISSA 60
          MSY  LGRRMWM ASVAVVQ  QSD GHHEA+KGV+ L Q LRVS+AETTAV++RPISSA
Sbjct: 1  MSYLGLGRRMWMMASVAVVQSGQSDGGHHEATKGVVSLPQKLRVSSAETTAVNLRPISSA 60

Query: 61 RNHEGEK-TRKADGEESIRRVMYLNCWGQG 87
           N EGE   R+A+GEES+RRVMYLNCWGQG
Sbjct: 61 WNQEGEDIKREANGEESLRRVMYLNCWGQG 90

[Close]

BLAST of Lsi10G008620.1 vs. NCBI nr
Match: KAE8646838.1 (hypothetical protein Csa_020898 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 56/91 (61.54%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 1  MSY----LGRRMWMTASVAVVQGAQSD-GHHEASKGVICLRQNLRVSTAETTAVDVRPIS 60
          MSY    LGRRMWMTASVAVVQG QSD GHHEA+KGVI L Q LRV + E          
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVISLPQKLRVLSGE---------- 60

Query: 61 SARNHEGEKTRKADGEESIRRVMYLNCWGQG 87
                 +  R+ADGEES+RRVMYLNCWGQG
Sbjct: 61 -------KIKREADGEESLRRVMYLNCWGQG 74

[Close]

BLAST of Lsi10G008620.1 vs. NCBI nr
Match: KAE8646839.1 (hypothetical protein Csa_020660 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 56/91 (61.54%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 1  MSY----LGRRMWMTASVAVVQGAQSD-GHHEASKGVICLRQNLRVSTAETTAVDVRPIS 60
          MSY    LGRRMWMTASVAVVQG QSD GHHEA+KGVI L Q LRV + E          
Sbjct: 1  MSYLGLGLGRRMWMTASVAVVQGGQSDGGHHEATKGVILLPQKLRVLSGE---------- 60

Query: 61 SARNHEGEKTRKADGEESIRRVMYLNCWGQG 87
                 +  R+ADGEES+RRVMYLNCWGQG
Sbjct: 61 -------KIKREADGEESLRRVMYLNCWGQG 74

[Close]

BLAST of Lsi10G008620.1 vs. NCBI nr
Match: KAG6604822.1 (Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-14
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETT--AVDVRPISSAR 60
           MSYLG R+WM ASVAVV G QSDG H +++G++ L +N     AETT  AVD+R  S+A 
Sbjct: 279 MSYLG-RVWMAASVAVVHGGQSDGRHGSAEGILTLHRN-----AETTAVAVDLRQFSTAT 338

Query: 61  NHEG-EKTRKADGEESIRRVMYLNCWGQG 87
           +H   +   K   +ES+RRVMY NCWGQG
Sbjct: 339 SHSNRDGDEKGQADESLRRVMYFNCWGQG 361

[Close]

BLAST of Lsi10G008620.1 vs. NCBI nr
Match: KAG7034937.1 (hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-14
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETT--AVDVRPISSAR 60
          MSYLG R+WM ASVAVV G QSDG H +++G++ L +N     AETT  AVD+R  S+A 
Sbjct: 1  MSYLG-RVWMAASVAVVHGGQSDGRHGSAEGILTLHRN-----AETTAVAVDLRQFSTAT 60

Query: 61 NHEG-EKTRKADGEESIRRVMYLNCWGQG 87
          +H   +   K   +ES+RRVMY NCWGQG
Sbjct: 61 SHSNRDGDEKGQADESLRRVMYFNCWGQG 83

[Close]

BLAST of Lsi10G008620.1 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 51.2 bits (121), Expect = 4.8e-07
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 1  MSYLGRRMWMTASVAVVQGAQSDGHHEASKGVICLRQNLRVSTAETTAVDVRPISSA--- 60
          MSYL  ++WM AS   VQG    G    S      R   R+S+      D+RP+++A   
Sbjct: 1  MSYL-NKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS------DLRPLAAADLT 60

Query: 61 ----RNHEGEKTRKADGEESIRRVMYLNCWGQG 87
               + E  +T  +  +ES+R+VMYLNCW QG
Sbjct: 61 GDSLPSEERRRTSSSTPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of Lsi10G008620.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G008620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY19	7.9e-26	75.56	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0KAY5	5.1e-17	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G123980 PE=4 SV=1	[more]
A0A5A7SLJ2	1.1e-08	46.81	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Z3	1.1e-08	46.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
A0A2J6L919	2.0e-08	41.11	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X40041 PE=4 SV=1	[more]

BLAST of Lsi10G008620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047914.1	1.6e-25	75.56	wound-responsive family protein [Cucumis melo var. makuwa]	[more]
KAE8646838.1	1.1e-16	61.54	hypothetical protein Csa_020898 [Cucumis sativus]	[more]
KAE8646839.1	1.1e-16	61.54	hypothetical protein Csa_020660 [Cucumis sativus]	[more]
KAG6604822.1	6.4e-14	53.93	Vesicle-associated protein 4-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7034937.1	6.4e-14	53.93	hypothetical protein SDJN02_01730, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi10G008620.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	4.8e-07	36.56	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..85 e-value: 1.2E-9 score: 39.1
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..86
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G008620	Lsi10G008620	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G008620.1.exon.1	Lsi10G008620.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G008620.1.CDS.1	Lsi10G008620.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G008620.1	Lsi10G008620.1-protein	polypeptide