Lsi08G007570.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi08G007570.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncentromere protein V-like
Locationchr08: 15911195 .. 15913339 (+)
Sequence length804
RNA-Seq ExpressionLsi08G007570.1
SyntenyLsi08G007570.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGTTAGTGTTCATTTTGATATTTGCTATAATCTATGTTTATAACTGTTGACAGTTGACACAAACTTTGTAAATACCTGTATTTGTAGCTGATGTATATTCTCGAGTCACGTCTAGCCATGCCATATTTCTACCTAATCCATCACTTTTCCTACTCTTCTGTTATCCCCATTCAACCACTGCGTTTCCCTCTTTTTCCGCCCCATTCTCGTTAATCTATCTCCTCCTAAAACTAGGATATTAGAGAAACACAATGAAAAACTGAGACTCAAACCGAAACAGGAAAACGCGTGGTTTCACCTATTCTAGAACGTTAGGGTTGGTTGAGTGAGTGCAGTTTTCGCCAAAACCAAACCAGGCACACACCTAGGAAGAACATTGATTTCCATTTATTAGATACTTTTCTCTCTAGTTTGGTAGGAGCTGTCCTCATTTGTCTTTAGGGTATCTTTGGTACTTTCATTTGCCATCCTCTTGCTAGGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAAGTGTGTCAAACCTTTCGCTATTTATCAAATGATATTTAAATTCTAACTCTATTCTCTGAGTTTATATGGTTTGGAGATGTGAGTGGGTGGTTTACAGAACCAAAGGGTTCTTGATTTCAATTTAAGAAAGTTTAGTGCCTGGTTGAGAATTTGAATTATATTTTATATTTTTAGAATTTGGATTATGTTTTTTAAAACGGTTCTCAGAATCTATGATCCAAACAAAGTAAATATTAAAATAACATATTTTTTTTTAATGTTTTTAGTGTATCCATATTTTGAATTTTAAAATTTAAAATGCAAAATTCAATTAAAAAGATAAAAACATTGTATTTCATTTTCTAAACTAAATTTATTTTTTAAATTAAAATATGTATTCTACAATTTATTATAAATTATAGACATTTACAAAATAATAATTATACCAAAATTTTAACTAAAACGTATTCATAAATAAATTAATAATGCTTGGTGGGTAACTGCAATGAGTTTTATTGTTTATAAATGATAGTAAACACGTTTAAAACAATAGTTTAAATTAAAATCTAATTCCTCAATCTCTTGTCAAACACATATTTATAAACATAAAATGCAACTCTATTTTTTTTTAATATCTTATTTTCTAAATTTCAGTTTTCAAATTCCCTACCAAATATATCCTTAACTTTCTTATCGTGGACGAGTAGGATAACAGGGAAATAAGACCAACAAGCCTAGGTTGATTACATATTTTCTCTAATCGCATAAGATTCCATTTGAAACCTTAGGATTAATGAAATGCTTCCTTGTTATGTGATTGTTGATTAAGAGTTTCATTGTTTGGGAAGATCCTTCATTATTGAATTTGTTGTTAATTTTGTCAAGTTTAACAAGTTACATAATGTTTTTTTTAGTATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAAGTAATATAAAACAAAAGTAATTTCAGTATCGAACTCAAGGGAATGGTTTACAAAGCTTTCAATTCGGTTAGAATACAAATTGAGTTCAGATAAGCAATTGAAAGGTAA

mRNA sequence

ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCTAGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAAGTAATATAAAACAAAAGTAATTTCAGTATCGAACTCAAGGGAATGGTTTACAAAGCTTTCAATTCGGTTAGAATACAAATTGAGTTCAGATAAGCAATTGAAAGGTAA

Coding sequence (CDS)

ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCTAGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAA

Protein sequence

MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRKRVVSPILEREFIALAFSLVTNILLDNKIEVFLYTAKLCSPLCNFNLVLYVVQTFIFCEYSGMREFELMTSINLTIGELWGECLLGANIHRQ
Homology
[Close]
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match: Q9CXS4 (Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 0 

Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL  + + I+T
Sbjct: 122 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITT 181

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWE-AS 124
           YTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D GT+  V   +F+GS+WE A 
Sbjct: 182 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWERAM 241

Query: 125 YDHTGIASFSK 135
            +H  I + SK
Sbjct: 242 KEHKTIKNMSK 251

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match: Q7Z7K6 (Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 0 

Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL   +  I+T
Sbjct: 145 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLL-KGAEHITT 204

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWE-AS 124
           YTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D GT+  +   +F+GS+WE A 
Sbjct: 205 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAM 264

Query: 125 YDHTGIASFSK 135
            +H  I + SK
Sbjct: 265 KEHKTIKNMSK 274

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match: A0A0U1RR11 (Centromere protein V-like protein 1 OS=Homo sapiens OX=9606 GN=CENPVL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0 

Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 130 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 189

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 190 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 249

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 250 AEEHKAI 255

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match: P0DPI3 (Centromere protein V-like protein 2 OS=Homo sapiens OX=9606 GN=CENPVL2 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0 

Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 130 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 189

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 190 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 249

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 250 AEEHKAI 255

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match: A0A0U1RRI6 (Centromere protein V-like protein 3 OS=Homo sapiens OX=9606 GN=CENPVL3 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0 

Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 145 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 204

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 205 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 264

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 265 AEEHKAI 270

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match: A0A1S3CMD8 (centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSK +  R
Sbjct: 121 EASYDHTGIASFSKLNTNR 139

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match: A0A5D3CJK9 (Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00190 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match: A0A1S3CMF5 (centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTRK 141
           EASYDHTGIASFSK  NT++
Sbjct: 121 EASYDHTGIASFSKL-NTKQ 139

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match: A0A1S4E4W3 (centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match: A0A1S4E5L6 (centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match: XP_038884393.1 (centromere protein V [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 2.0e-78
Identity = 135/139 (97.12%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRW+VEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWQVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVA+TFKCVDPGTLTHVEIR+FDGSNW
Sbjct: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRKFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSKF+NTR
Sbjct: 121 EASYDHTGIASFSKFENTR 139

[Close]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match: XP_008464790.1 (PREDICTED: centromere protein V isoform X2 [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-75
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSK +  R
Sbjct: 121 EASYDHTGIASFSKLNTNR 139

[Close]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match: XP_008464793.1 (PREDICTED: centromere protein V isoform X5 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTRK 141
           EASYDHTGIASFSK  NT++
Sbjct: 121 EASYDHTGIASFSKL-NTKQ 139

[Close]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match: XP_016903271.1 (PREDICTED: centromere protein V isoform X6 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match: XP_016903270.1 (PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centromere protein V isoform X1 [Cucumis melo var. makuwa] >TYK11344.1 centromere protein V isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]
BLAST of Lsi08G007570.1 vs. TAIR 10
Match: AT5G16940.1 (carbon-sulfur lyases )

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-58
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 121 EASYDHTGIASFSK 135
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

[Close]
BLAST of Lsi08G007570.1 vs. TAIR 10
Match: AT5G16940.2 (carbon-sulfur lyases )

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-58
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 121 EASYDHTGIASFSK 135
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

The following BLAST results are available for this feature:
BLAST of Lsi08G007570.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CXS42.0e-3351.91Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2[more]
Q7Z7K65.9e-3351.15Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1[more]
A0A0U1RR111.5e-2040.16Centromere protein V-like protein 1 OS=Homo sapiens OX=9606 GN=CENPVL1 PE=2 SV=1[more]
P0DPI31.5e-2040.16Centromere protein V-like protein 2 OS=Homo sapiens OX=9606 GN=CENPVL2 PE=3 SV=1[more]
A0A0U1RRI61.5e-2040.16Centromere protein V-like protein 3 OS=Homo sapiens OX=9606 GN=CENPVL3 PE=3 SV=1[more]
BLAST of Lsi08G007570.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CMD81.3e-7593.53centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=... [more]
A0A5D3CJK93.8e-7593.48Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CMF53.8e-7593.57centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=... [more]
A0A1S4E4W33.8e-7593.48centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=... [more]
A0A1S4E5L63.8e-7593.48centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=... [more]
BLAST of Lsi08G007570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884393.12.0e-7897.12centromere protein V [Benincasa hispida][more]
XP_008464790.12.7e-7593.53PREDICTED: centromere protein V isoform X2 [Cucumis melo][more]
XP_008464793.17.9e-7593.57PREDICTED: centromere protein V isoform X5 [Cucumis melo][more]
XP_016903271.17.9e-7593.48PREDICTED: centromere protein V isoform X6 [Cucumis melo][more]
XP_016903270.17.9e-7593.48PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centrome... [more]
BLAST of Lsi08G007570.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G16940.17.1e-5870.15carbon-sulfur lyases [more]
AT5G16940.27.1e-5870.15carbon-sulfur lyases [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006913CENP-V/GFA domainPFAMPF04828GFAcoord: 31..105
e-value: 2.5E-6
score: 27.7
IPR006913CENP-V/GFA domainPROSITEPS51891CENP_V_GFAcoord: 8..121
score: 24.546362
NoneNo IPR availableGENE3D2.170.150.70coord: 9..124
e-value: 3.5E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR28620CENTROMERE PROTEIN Vcoord: 1..136
NoneNo IPR availablePANTHERPTHR28620:SF9CARBON-SULFUR LYASEScoord: 1..136
IPR011057Mss4-like superfamilySUPERFAMILY51316Mss4-likecoord: 6..134

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi08G007570Lsi08G007570gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G007570.1.exon.1Lsi08G007570.1.exon.1exon
Lsi08G007570.1.exon.2Lsi08G007570.1.exon.2exon
Lsi08G007570.1.exon.3Lsi08G007570.1.exon.3exon
Lsi08G007570.1.exon.4Lsi08G007570.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G007570.1.CDS.1Lsi08G007570.1.CDS.1CDS
Lsi08G007570.1.CDS.2Lsi08G007570.1.CDS.2CDS
Lsi08G007570.1.CDS.3Lsi08G007570.1.CDS.3CDS
Lsi08G007570.1.CDS.4Lsi08G007570.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G007570.1.three_prime_UTR.1Lsi08G007570.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi08G007570.1Lsi08G007570.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016846 carbon-sulfur lyase activity
molecular_function GO:0046872 metal ion binding