Lsi08G007570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G007570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	centromere protein V-like
Location	chr08: 15911195 .. 15913339 (+)
RNA-Seq Expression	Lsi08G007570
Synteny	Lsi08G007570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGTTAGTGTTCATTTTGATATTTGCTATAATCTATGTTTATAACTGTTGACAGTTGACACAAACTTTGTAAATACCTGTATTTGTAGCTGATGTATATTCTCGAGTCACGTCTAGCCATGCCATATTTCTACCTAATCCATCACTTTTCCTACTCTTCTGTTATCCCCATTCAACCACTGCGTTTCCCTCTTTTTCCGCCCCATTCTCGTTAATCTATCTCCTCCTAAAACTAGGATATTAGAGAAACACAATGAAAAACTGAGACTCAAACCGAAACAGGAAAACGCGTGGTTTCACCTATTCTAGAACGTTAGGGTTGGTTGAGTGAGTGCAGTTTTCGCCAAAACCAAACCAGGCACACACCTAGGAAGAACATTGATTTCCATTTATTAGATACTTTTCTCTCTAGTTTGGTAGGAGCTGTCCTCATTTGTCTTTAGGGTATCTTTGGTACTTTCATTTGCCATCCTCTTGCTAGGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAAGTGTGTCAAACCTTTCGCTATTTATCAAATGATATTTAAATTCTAACTCTATTCTCTGAGTTTATATGGTTTGGAGATGTGAGTGGGTGGTTTACAGAACCAAAGGGTTCTTGATTTCAATTTAAGAAAGTTTAGTGCCTGGTTGAGAATTTGAATTATATTTTATATTTTTAGAATTTGGATTATGTTTTTTAAAACGGTTCTCAGAATCTATGATCCAAACAAAGTAAATATTAAAATAACATATTTTTTTTTAATGTTTTTAGTGTATCCATATTTTGAATTTTAAAATTTAAAATGCAAAATTCAATTAAAAAGATAAAAACATTGTATTTCATTTTCTAAACTAAATTTATTTTTTAAATTAAAATATGTATTCTACAATTTATTATAAATTATAGACATTTACAAAATAATAATTATACCAAAATTTTAACTAAAACGTATTCATAAATAAATTAATAATGCTTGGTGGGTAACTGCAATGAGTTTTATTGTTTATAAATGATAGTAAACACGTTTAAAACAATAGTTTAAATTAAAATCTAATTCCTCAATCTCTTGTCAAACACATATTTATAAACATAAAATGCAACTCTATTTTTTTTTAATATCTTATTTTCTAAATTTCAGTTTTCAAATTCCCTACCAAATATATCCTTAACTTTCTTATCGTGGACGAGTAGGATAACAGGGAAATAAGACCAACAAGCCTAGGTTGATTACATATTTTCTCTAATCGCATAAGATTCCATTTGAAACCTTAGGATTAATGAAATGCTTCCTTGTTATGTGATTGTTGATTAAGAGTTTCATTGTTTGGGAAGATCCTTCATTATTGAATTTGTTGTTAATTTTGTCAAGTTTAACAAGTTACATAATGTTTTTTTTAGTATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAAGTAATATAAAACAAAAGTAATTTCAGTATCGAACTCAAGGGAATGGTTTACAAAGCTTTCAATTCGGTTAGAATACAAATTGAGTTCAGATAAGCAATTGAAAGGTAA

mRNA sequence

ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCTAGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAAGTAATATAAAACAAAAGTAATTTCAGTATCGAACTCAAGGGAATGGTTTACAAAGCTTTCAATTCGGTTAGAATACAAATTGAGTTCAGATAAGCAATTGAAAGGTAA

Coding sequence (CDS)

ATGGCGTCTGAGTTGGTTGTGCATAATGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTTGAAGCACCTGCGAGTGTTGTAGCTTGGGATTGCAACTGTTCTAATTGCTTCATGAGGGCCAATACACATTTCATCGTACCTTTGGAACGGTTCAAGCTTTTAGGAGATTCTAGCAACTTTATTTCTACCTATACCTTTGGTTCTCACACTGCCAAACATACCTTCTGCAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAATCCAGATGGAGTTGCAGTTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGATCACACAGGCATTGCTTCATTCTCTAAGTTTGACAACACAAGAAAACGCGTGGTTTCACCTATTCTAGAACGCGAATTTATAGCCCTTGCATTCAGTCTTGTAACAAATATATTGCTAGACAATAAAATTGAGGTATTCTTGTATACTGCTAAGTTGTGTTCTCCTTTATGCAATTTTAACTTAGTTTTGTATGTTGTTCAAACATTCATATTTTGTGAATATAGTGGGATGAGAGAATTTGAGCTAATGACCTCTATTAACTTGACAATTGGTGAGTTATGGGGCGAATGCCTCCTAGGTGCAAATATACATCGTCAGTAA

Protein sequence

MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWEASYDHTGIASFSKFDNTRKRVVSPILEREFIALAFSLVTNILLDNKIEVFLYTAKLCSPLCNFNLVLYVVQTFIFCEYSGMREFELMTSINLTIGELWGECLLGANIHRQ

Homology

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BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot
Match: Q9CXS4 (Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL  + + I+T
Sbjct: 122 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLLKGAES-ITT 181

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWE-AS 124
           YTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D GT+  V   +F+GS+WE A 
Sbjct: 182 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSVVTEEFNGSDWERAM 241

Query: 125 YDHTGIASFSK 135
            +H  I + SK
Sbjct: 242 KEHKTIKNMSK 251

[Close]

BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot
Match: Q7Z7K6 (Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIVP  RFKLL   +  I+T
Sbjct: 145 LVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIVPASRFKLL-KGAEHITT 204

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNWE-AS 124
           YTF +H A+HTFCK CG+ SFY PRSNP G  +   C+D GT+  +   +F+GS+WE A 
Sbjct: 205 YTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRSMVTEEFNGSDWEKAM 264

Query: 125 YDHTGIASFSK 135
            +H  I + SK
Sbjct: 265 KEHKTIKNMSK 274

[Close]

BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot
Match: A0A0U1RR11 (Centromere protein V-like protein 1 OS=Homo sapiens OX=9606 GN=CENPVL1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 130 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 189

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 190 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 249

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 250 AEEHKAI 255

[Close]

BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot
Match: P0DPI3 (Centromere protein V-like protein 2 OS=Homo sapiens OX=9606 GN=CENPVL2 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 130 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 189

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 190 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 249

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 250 AEEHKAI 255

[Close]

BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot
Match: A0A0U1RRI6 (Centromere protein V-like protein 3 OS=Homo sapiens OX=9606 GN=CENPVL3 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 5   LVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSNFIST 64
           LV H GGCHC  VR+ V APA +   DC+C  C  + + HF+VP  RF LL  + + + T
Sbjct: 145 LVHHTGGCHCGAVRFAVWAPADLRVVDCSCRLCRKKQHRHFLVPASRFTLLQGAESIV-T 204

Query: 65  YTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSN--WEA 124
           Y   +H A H+FC  CG+ SF+   S+P    V   C+D GT+  V I +  G +   EA
Sbjct: 205 YRSNTHPALHSFCSRCGVQSFHAAVSDPRVYGVAPHCLDEGTVRSVVIEEVGGGDPGEEA 264

Query: 125 SYDHTGI 130
           + +H  I
Sbjct: 265 AEEHKAI 270

[Close]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL
Match: A0A1S3CMD8 (centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSK +  R
Sbjct: 121 EASYDHTGIASFSKLNTNR 139

[Close]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL
Match: A0A5D3CJK9 (Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00190 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL
Match: A0A1S3CMF5 (centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTRK 141
           EASYDHTGIASFSK  NT++
Sbjct: 121 EASYDHTGIASFSKL-NTKQ 139

[Close]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL
Match: A0A1S4E4W3 (centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL
Match: A0A1S4E5L6 (centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.8e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]

BLAST of Lsi08G007570 vs. NCBI nr
Match: XP_038884393.1 (centromere protein V [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 2.0e-78
Identity = 135/139 (97.12%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRW+VEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWQVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVA+TFKCVDPGTLTHVEIR+FDGSNW
Sbjct: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRKFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSKF+NTR
Sbjct: 121 EASYDHTGIASFSKFENTR 139

[Close]

BLAST of Lsi08G007570 vs. NCBI nr
Match: XP_008464790.1 (PREDICTED: centromere protein V isoform X2 [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-75
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTR 140
           EASYDHTGIASFSK +  R
Sbjct: 121 EASYDHTGIASFSKLNTNR 139

[Close]

BLAST of Lsi08G007570 vs. NCBI nr
Match: XP_008464793.1 (PREDICTED: centromere protein V isoform X5 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNTRK 141
           EASYDHTGIASFSK  NT++
Sbjct: 121 EASYDHTGIASFSKL-NTKQ 139

[Close]

BLAST of Lsi08G007570 vs. NCBI nr
Match: XP_016903271.1 (PREDICTED: centromere protein V isoform X6 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]

BLAST of Lsi08G007570 vs. NCBI nr
Match: XP_016903270.1 (PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centromere protein V isoform X1 [Cucumis melo var. makuwa] >TYK11344.1 centromere protein V isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75
Identity = 129/138 (93.48%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           F+STYTFGSHTAKHTFCK CGITSFY PRSNPDGVA+TFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 121 EASYDHTGIASFSKFDNT 139
           EASYDHTGIASFSK + +
Sbjct: 121 EASYDHTGIASFSKLNTS 138

[Close]

BLAST of Lsi08G007570 vs. TAIR 10
Match: AT5G16940.1 (carbon-sulfur lyases )

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-58
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 121 EASYDHTGIASFSK 135
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

[Close]

BLAST of Lsi08G007570 vs. TAIR 10
Match: AT5G16940.2 (carbon-sulfur lyases )

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-58
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60
           M SEL+ H GGCHC K++WRV+A  SV+AW CNCS+C MR N HFIVP   F+LL DS +
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 61  FISTYTFGSHTAKHTFCKVCGITSFYHPRSNPDGVAVTFKCVDPGTLTHVEIRQFDGSNW 120
           FI+TYTFG+HTAKHTFCKVCGITSFY PRSNPDGVAVT KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 121 EASYDHTGIASFSK 135
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

The following BLAST results are available for this feature:

BLAST of Lsi08G007570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CXS4	2.0e-33	51.91	Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2	[more]
Q7Z7K6	5.9e-33	51.15	Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1	[more]
A0A0U1RR11	1.5e-20	40.16	Centromere protein V-like protein 1 OS=Homo sapiens OX=9606 GN=CENPVL1 PE=2 SV=1	[more]
P0DPI3	1.5e-20	40.16	Centromere protein V-like protein 2 OS=Homo sapiens OX=9606 GN=CENPVL2 PE=3 SV=1	[more]
A0A0U1RRI6	1.5e-20	40.16	Centromere protein V-like protein 3 OS=Homo sapiens OX=9606 GN=CENPVL3 PE=3 SV=1	[more]

BLAST of Lsi08G007570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMD8	1.3e-75	93.53	centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=...	[more]
A0A5D3CJK9	3.8e-75	93.48	Centromere protein V isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CMF5	3.8e-75	93.57	centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=...	[more]
A0A1S4E4W3	3.8e-75	93.48	centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=...	[more]
A0A1S4E5L6	3.8e-75	93.48	centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=3 SV=...	[more]

BLAST of Lsi08G007570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884393.1	2.0e-78	97.12	centromere protein V [Benincasa hispida]	[more]
XP_008464790.1	2.7e-75	93.53	PREDICTED: centromere protein V isoform X2 [Cucumis melo]	[more]
XP_008464793.1	7.9e-75	93.57	PREDICTED: centromere protein V isoform X5 [Cucumis melo]	[more]
XP_016903271.1	7.9e-75	93.48	PREDICTED: centromere protein V isoform X6 [Cucumis melo]	[more]
XP_016903270.1	7.9e-75	93.48	PREDICTED: centromere protein V isoform X1 [Cucumis melo] >KAA0045397.1 centrome...	[more]

BLAST of Lsi08G007570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16940.1	7.1e-58	70.15	carbon-sulfur lyases	[more]
AT5G16940.2	7.1e-58	70.15	carbon-sulfur lyases	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006913	CENP-V/GFA domain	PFAM	PF04828	GFA	coord: 31..105 e-value: 2.5E-6 score: 27.7
IPR006913	CENP-V/GFA domain	PROSITE	PS51891	CENP_V_GFA	coord: 8..121 score: 24.546362
None	No IPR available	GENE3D	2.170.150.70		coord: 9..124 e-value: 3.5E-24 score: 86.8
None	No IPR available	PANTHER	PTHR28620	CENTROMERE PROTEIN V	coord: 1..136
None	No IPR available	PANTHER	PTHR28620:SF9	CARBON-SULFUR LYASES	coord: 1..136
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 6..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G007570.1	Lsi08G007570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016846	carbon-sulfur lyase activity
molecular_function	GO:0046872	metal ion binding