Lsi06G005350.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G005350.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr06: 6620643 .. 6623280 (-)
Sequence length	255
RNA-Seq Expression	Lsi06G005350.1
Synteny	Lsi06G005350.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTCAGCCGCTGGTCCAGCACCTGAAGCCTAGACCCTTCGTCTGTTCACCAGCGTTCACAGCAACGTTCTCCGTTCAGGTTCGCCGGTCCTCATAGCTAAGATTTTGTCTGATTTTGCAGGAAGCCCGAAAGCGTTTCCCCTGAGAAGCTCCCGAAGTAAGTTTACCTATTAATTTCCCCCCATTCAATTAGTGTCTTTCTGCTGCATAGGTTGATCTCAAGTGGTGTTTATTGGGGTTTTTGTTGCTTTCCTTCATAATGTGTGAATGTTATTTTCTAATTTAACTAGTCGTTTTGAAATTTAATGAGGGATGCTGATTATTTAGGTTAAGAACTGTAACTTTAGTCCTTATCAATAAGTGGAGATTTTTGTAAGCATGACCCAAATTTGGTTTCACTAATGTTAAATGGTGTGAATTCTGAAAGTAATGAAAACTATCCTTTTATTTGTGTGACAAAGCAATGACTAAGGTTAAATTGCCCATTCACAATCGTGGGTCTCATCCATAGTGAATCGATGAGACCCCAAGTTCGATTTCACGTTTGTAAAAAGTCATAAGATCGTTAAATTTTAATAATGGGCGAGAATTTTTATTTTTATAAAAATCACAATGCATCTTGAAATAGTGTTGAGCTCTAGGGAGAATTTAATGTTGGTCGGTACTTTGTGGCGTAAGCAAAATGTTAGTTTTTCATTGTTTTAAGAATGTAGGTCATTGGACTATAACACAACCAAATTTAAATCATCTATACAAAAGAAAACTGTGGACTGGCTGAATTAATTTTAAGGACTGTGGTTGAATGTTTACAATTTTGTGCATTTGAACCTATTCGCTGATATGTTTAGACCTCTTACTCACTGAACAGCAATAATGGAACCGCTGTGAATTAAACTACACATTTGGTAAATACACGGTGCTTTAAAATTCCCCTCTTTTCTCTGTTTTATGTTCAAATCTTGCCTTCATCACCTTTTGTTTTTTGTTTGTGGATTCAAACATTTGAGGAATGTGATTTTGATTTTAAGAGCGATGGAGATGATTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATGTAACCATGATGTTGACCGAACAGCTTTTAGCTACTGGGGATTAGTTCTGGTCACTGATGGTTCTTTCTTATTGTTGTTGTTGTTGTTGTTGTGGGAACTCTTAACCTTTTGAATAGATACACCTACTTGACTTAGCCAAAATTGGTGATTCTGATGGTTCCTTAGTTCATCATTGCTCTATGTAGTTTTAGTTTTGATTTTGATTTTGATTTTAGAAGTATCCGTTCTTTCAGGACTTTCAAATCTATTTTCACGCTTGATTTTGATTGATGTGGTTTGGATGAATTAAAATAATTTTCAATGGTTTCGGGATGGTTGTTAGCAAAGCTTGTAGTCCTTTTGTCTAAGTCATTGTTATATAAACAATTTGTAGTCCTTTTATCTTGGTCATTGTTAAAATAATTTTCAAACCTTTCTGGATGGTTGTTAGCATATCATAGAATGACTTCTCATTTCTCTCCTTTTGGCTGTACCACTTTTTCTATCTATTTAAATTGATTTTTCAGCATGCCAGTATGTCATAACTGTTGAATCATTTGTTATATGACTTCTCCTTTTCCGCATTGGCTTGTGAATTAATGCAGAAATGATAGTGGTGTTCATTGTTTGTTGAATTTTTTATGTTTAAGATTGTTAGCATGAACAAGAAAGTCATTTCCAATGGCAGAATTGGAAGCAAGGAAACTCAAATATCCAAACACAGGCACAGAAGCCCTTGCTAATGAGAATTTTAATTAAGGGTTAGTAGCCTAATTACGAACTCTGTTGCCATGTCTTATTTCCATTTGAATTTAATCTTACATATTGATTTTGTTTAGTTTAATGCAGTTAAATTACAAAACTATATGAATCTTGGTCCTTTCAAAATGTGATGATCACCTTCAAAATTTGATTACTTTTTTCCACGCCCTTTTCCAGCATCATTTCATGATATCTTCCATTGTCATCTGATGTCTCTCATGTTCAGCTACAGAATTCTTTTGAAAGACTTATGTTGAGGAATTCAACATTGAAGCTTATGTTCCTGTCAGTTCCTGTCAGCTCCTGTCAGCTAATGACTATTGTGAGTAAGTAGGCTTTTGGATCACTGGCCAGATGCTTTTTGAATTATCCTTATGCTTAATTGCTAACAATATACATGGTGAAGTAAATAAAATTTTTTCAAGCTTCTTCAGAAAAATGGGGATTTATGTGAAGGTTAAGACAAACGGAAAGGTACAAATTTCCTTCTCTTACTCTTCTCCCAAACTTAAATAGCACGAATAAAGAACCTAGTTGAATTTGAATTTCGGGGCTAGCTCAATTGAGCAATAATGGAACAATTGTGAATGAAACTACATAAGAGAAAATGGTAAGTACACCGTGCTTTAAAATTCCCCTCTTTTCTCTGTTTTATGTTCAAATCTTGCCTTCCTCTTCTCTTATTTTTTTGTTGATTGATTCGAATATTTGAGGAATGTGATTTTGATTTTAAAAGCGATGGAGATGAAACTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATGCAACCATCATGCGGACCGAACAGCTTT

mRNA sequence

TCCATTCAGCCGCTGGTCCAGCACCTGAAGCCTAGACCCTTCGTCTGTTCACCAGCGTTCACAGCAACGTTCTCCGTTCAGGTTCGCCGGAAGCCCGAAAGCGTTTCCCCTGAGAAGCTCCCGAAAGCGATGGAGATGATTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATCGATGGAGATGAAACTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATGCAACCATCATGCGGACCGAACAGCTTT

Coding sequence (CDS)

TCCATTCAGCCGCTGGTCCAGCACCTGAAGCCTAGACCCTTCGTCTGTTCACCAGCGTTCACAGCAACGTTCTCCGTTCAGGTTCGCCGGAAGCCCGAAAGCGTTTCCCCTGAGAAGCTCCCGAAAGCGATGGAGATGATTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATCGATGGAGATGAAACTAAGGAACCAAATGATGAGCGTCTTCCAAAGAAGATGCAACCATCATGCGGACCGAACAGCTTT

Protein sequence

SIQPLVQHLKPRPFVCSPAFTATFSVQVRRKPESVSPEKLPKAMEMIKEPNDERLPKKIDGDETKEPNDERLPKKMQPSCGPNSF

Homology

The following BLAST results are available for this feature:

BLAST of Lsi06G005350.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G005350.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G005350.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G005350.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..73

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G005350	Lsi06G005350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G005350.1.exon.4	Lsi06G005350.1.exon.4	exon
Lsi06G005350.1.exon.3	Lsi06G005350.1.exon.3	exon
Lsi06G005350.1.exon.2	Lsi06G005350.1.exon.2	exon
Lsi06G005350.1.exon.1	Lsi06G005350.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G005350.1.CDS.4	Lsi06G005350.1.CDS.4	CDS
Lsi06G005350.1.CDS.3	Lsi06G005350.1.CDS.3	CDS
Lsi06G005350.1.CDS.2	Lsi06G005350.1.CDS.2	CDS
Lsi06G005350.1.CDS.1	Lsi06G005350.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G005350.1	Lsi06G005350.1-protein	polypeptide