Lsi05G020650.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTAAAAAAATAATAATAATAAGAAGAAATATCTTCAGAAGACAGATCAGCGTAACCCCCATGAGTGTTCCAATATAATCTCTCAATTGCGGACGATTTCTCCCCTTTTCTTAATCACACATGAAAAAACCAAGCAATTCCCTCAAAACCCCCTATTCCCCACCCGTTTTCCTTTTTCAAAACCCTAATTTTGGCCCCCAATTTGTTGTTTTCCGGATACCTCACCGGTTTTCTCTTCCGATGATGCCCAATATCTGAGAAAACACCTTCCATTGCATCCTTTTTTCTCCTTTTCTCTTCAATCGGAACCCGGATTCGAGGATCTGATGGAATTCCAAGAAAGAGATTCGTCCATGGCGATTTCCAGGACCTCGAATTCGTATATCAATGGCCCTTCATTGACTCATTCTGCTTGGTTTGAGGTTCGGCTTTTCTATGTTCGGATTTCTCCCTGTGTGATTGCTAGCGTTCCCGACCATCTTAATCTGCGCCACCTTCGACGGGAAATTGGTGTTTCCCTTGAGATTAATGGGTCTCAAATTCCGGCCTCCGATTCCGCTTCTATTGCCCTTCGTCGTGATCGGCTCAACAAGGAATCCTCGGAGGTTACGTATGTTAGCACTGATAGCATTCGGGTTACGGGGGGTGTTGAGTTTGAGGTCTATGAGAATGAGGATTTGATTCTCTGTGGCTCTTTGGAACGAATGGAGGCCAATTGGATTAACGGGAGCGTTGGATTGGAGAACAATTCGAAGACAGGTTGGACTATGGAATGTTTTATGGCTGCGTCCATGTGTTCCGGTTCCTCGGCCTTTTTCCAGCCTAAACTTGGGGTTTCCTCGCCGGCTATTGAGGTTTATATTGCTGGTTGTTGCTCCGGTATGCCAGTGATCTTGACGCAGACAATTCAGGTTAGTCCGAGGCGGAGGAACTTGTGGCAAGGTGTCCTGGATGCAATTCCTGAGGATGAAGAAGTTGGAAAGGAGGAGAATGGAAGTAATGGGTTGATTCGGCACCAGAAAGTGCAGGTAAATGTTTGTATCTTCTCATATTTTTGTTCTCAATTATCTAGGCGTTGTTTGAGCTCAGGAATTTTGGAGTTAGTATATTGCTGCACAGCGAAAATTGCATATCGCATTTTGTTGGTGGATTTAAACGTACAATCTGGGATTTGTAAGAGTTGCAGTAGATGCTGTACCTGATTATCCTAGATATTACCAAAACCATACGAGACCCAGACACAACCAAAAATCTTTGGTGCCCCATCCACCTAATTAAGGGACATGACTTGGACTCTTGCAAAATATGAAAAGAAAAATAATTGGCTAAAGATGACACCTCTCCCTAGTTGCCTATTTACCCAGACAACCAACACTTGGGCATAGGCTTGTGTAAGAAAGCCAGTGTAATTAGTTGTACTTCAATCAACCAACACTAGAAATGCATAACTCTACAAAATAATTTATGCATGCCAGTGATGGCTTCTTTACATCATGTGATGCGTTTAATTAGCGTTCTGGTCGAATATTTGGGCCTTTGTGGTCATAAACTTGCACATGATATTGAACTTTATTGTGTTTGTAGGTTTAATCGTAAGATACTTGTTTTTATAGTTTATTTATTTTTGAAAATGGGGTATGAGGATCCCACCACTTACATCCTTGGAGACTTCATGGACTCCAGGCTTACTCGATAGTCTATAAGAAGTTTAAATTATTAAGCTTTCTACACGGGCTTGAAACCAGCATAATGGTGGCTTTCTTGTCTCATAATTCTAGGTATTGAATTTCCATATACCAGATAGCTGGGTGACATTTTGACTAAAAAAATAGTACGTGTATTTTTCCTTATTTCATTATGCTTCCAGTACAACATTTTGATAGTGAATCTCCCAGTGTATCATGCACTTCACAGTATTTAAGGCATTAGAAAGAACCAAAATGTTCAAATTTTGCTGTACAATGCTGATAGAGAACATGTGTGAGGAAAAAATGTTTTTCTCTCTTCCCCATATTTTCTGGTTGTGAAATGAATCTGACCATTTGGTTCTCCTCTATTGCTGAACCCTACTTTTCTTATTATTTCTGTTAAAATCTTGGTGTCTTGATTGTCTTACATCTGTTCGTTGACTACGTTGTACTTCAATCAATCATTGAAAATAGTTGTTATGCATTTCTAGGCATGCATAAATTTCTAATCAAGTTGTTATGCACCCGTTTGTAGAGTTATTGTGAGGTGTGAACAGGGTTTCATTGATTTTTACTTAACTGATTATATTCCTTTCTTGGGCTCATGTAGATGTTAGAGTCTGAAGTTGATGATTATGACCCAGATGGTAAAATGGGGCATGGTTTCTACGGTGATGATATGTACACTGGCGAAGATGGGCAGCTCTCATGGTTCAATGCAGGTGTTAGAGTGGGTGTTGGTATTGGTCTTGGAGTGTGCCTTGGAGTTGGAATTGGGGTTGGCTTGCTCATGCGTTCATACCAAACCACAACAAGACATTTTAGACGACGGTTTATGTAATTAGGATATTGTTACTTGGGAATCTGGAGATTGTTATACTAGTGAATAGACAATAAAGGGGAAGAGATTTTCGGGTTCCCAATCGTTAAGCCTGAACATAACATACAATAATGCAGGCGAGGAAGTATTAAGTTGTTAGGACTTTGAACAGAATCAAGAAGTCAGTGAAGCCACTCAAGGAAGTTGAACGTTAACTTCTTCTGTAGGCAGGATGAAAGCTGTACAGTCTCCCCTTTTTGTTCGTTTCTCTACATGAAGCACTCTCTCAGGCAGCAGAGACCTTCTTGCTCAGTTCCATGGCTGCTTACTTTTCTATGAATATGTTTCTTTACATAAATTGCAGGGATCGTGTTGGTGCTTATCCTCGATGGATGTAGCCTTTTATCAAAGGGGTAGCAACGGAACACAACCCTGCAGGAAAAAAGGCTTTCCTAGGACAGAATAAGCTTGTGTGAGGTTTGACTTTGTCTTGAAGATTATCTACTTTTCTTTACTGATGCTGTATAGGATATCGCCTTTTTTTTCTCTCCTTTTCGTTGGGGGTTAAATCACAAATACAGTCGCTTTACATTGTCATTTTTTCCCTACACTTCAATTTGCTTCAATTTAGTCTTAGTAGTTTTGTAAATGTATTAGTTTAGGCCCTATTTGATAACTATTTGGATTTTGGTTTTTGAAAATTAATCTCATAAACACTATTACTTATAAATTTCTTTGATTTGTTATCTACTTTCTACTAATGTTTTCAAAAACCAAGCTAAGTTTTGTTTTGTTTTTAGTAGTAAAAAACTTGTTTATGTTTTTGAAATTTAAAAGAAAAGTGAAAACTATAGTAAGTGAATTGAGAGGAAACAAGTATAAATTTCTAAAACGTAAAATTAAAAACAAAATTGTTATCAAATGGGGCTTAGTTTCTGAAGTTGATTATCCAGTTAAATAGTATTGTAAAGTTGACATAGTACGGGTGGGGAGCTGTCATGACATTTTGATACGTCGTACAGTTATGCATTAAAGTCCCCATAAAATGAGTGTCTTTCAATTGCTATTTAACTGGATAGTTAGATTTGGAGATGAAATTAATATTTTTGCGAAAGTACAAGAACTAACTCGAAGCACATGAAAACACAGGACGTTCAAATGACAAAGTATAAGTACTAGAGTTACAATTTTTTTTGTCCTTTTTTTTTGTCCCCTCTCTCTCTGTTTGAGCTGTTCTATCCAAAAATTTTTTTACCTTTCATAGAGTGTAAATTACTATCTTGTAGCAACTTCTCTGGATGAGTTCTGTGAATGTGATTATGCATCAATCTCAAGCAGCGCCTTGAGCTCATTCATTAGCATATGATTTGTTCAGCTGTTTCTTATGTTGGGAATGGATTTTAGTTTGAATTCGTTCCATTGTTGATTTTCTTTGACATATACCTAATAAATGTGACCACGTAGAAATGACATATAGGTAA ATTTTAAAAAAATAATAATAATAAGAAGAAATATCTTCAGAAGACAGATCAGCGTAACCCCCATGAGTGTTCCAATATAATCTCTCAATTGCGGACGATTTCTCCCCTTTTCTTAATCACACATGAAAAAACCAAGCAATTCCCTCAAAACCCCCTATTCCCCACCCGTTTTCCTTTTTCAAAACCCTAATTTTGGCCCCCAATTTGTTGTTTTCCGGATACCTCACCGGTTTTCTCTTCCGATGATGCCCAATATCTGAGAAAACACCTTCCATTGCATCCTTTTTTCTCCTTTTCTCTTCAATCGGAACCCGGATTCGAGGATCTGATGGAATTCCAAGAAAGAGATTCGTCCATGGCGATTTCCAGGACCTCGAATTCGTATATCAATGGCCCTTCATTGACTCATTCTGCTTGGTTTGAGGTTCGGCTTTTCTATGTTCGGATTTCTCCCTGTGTGATTGCTAGCGTTCCCGACCATCTTAATCTGCGCCACCTTCGACGGGAAATTGGTGTTTCCCTTGAGATTAATGGGTCTCAAATTCCGGCCTCCGATTCCGCTTCTATTGCCCTTCGTCGTGATCGGCTCAACAAGGAATCCTCGGAGGTTACGTATGTTAGCACTGATAGCATTCGGGTTACGGGGGGTGTTGAGTTTGAGGTCTATGAGAATGAGGATTTGATTCTCTGTGGCTCTTTGGAACGAATGGAGGCCAATTGGATTAACGGGAGCGTTGGATTGGAGAACAATTCGAAGACAGGTTGGACTATGGAATGTTTTATGGCTGCGTCCATGTGTTCCGGTTCCTCGGCCTTTTTCCAGCCTAAACTTGGGGTTTCCTCGCCGGCTATTGAGGTTTATATTGCTGGTTGTTGCTCCGGTATGCCAGTGATCTTGACGCAGACAATTCAGGTTAGTCCGAGGCGGAGGAACTTGTGGCAAGGTGTCCTGGATGCAATTCCTGAGGATGAAGAAGTTGGAAAGGAGGAGAATGGAAGTAATGGGTTGATTCGGCACCAGAAAGTGCAGATGTTAGAGTCTGAAGTTGATGATTATGACCCAGATGGTAAAATGGGGCATGGTTTCTACGGTGATGATATGTACACTGGCGAAGATGGGCAGCTCTCATGGTTCAATGCAGGTGTTAGAGTGGGTGTTGGTATTGGTCTTGGAGTGTGCCTTGGAGTTGGAATTGGGGTTGGCTTGCTCATGCGTTCATACCAAACCACAACAAGACATTTTAGACGACGGTTTATGTAATTAGGATATTGTTACTTGGGAATCTGGAGATTGTTATACTAGTGAATAGACAATAAAGGGGAAGAGATTTTCGGGTTCCCAATCGTTAAGCCTGAACATAACATACAATAATGCAGGCGAGGAAGTATTAAGTTGTTAGGACTTTGAACAGAATCAAGAAGTCAGTGAAGCCACTCAAGGAAGTTGAACGTTAACTTCTTCTGTAGGCAGGATGAAAGCTGTACAGTCTCCCCTTTTTGTTCGTTTCTCTACATGAAGCACTCTCTCAGGCAGCAGAGACCTTCTTGCTCAGTTCCATGGCTGCTTACTTTTCTATGAATATGTTTCTTTACATAAATTGCAGGGATCGTGTTGGTGCTTATCCTCGATGGATGTAGCCTTTTATCAAAGGGGTAGCAACGGAACACAACCCTGCAGGAAAAAAGGCTTTCCTAGGACAGAATAAGCTTGTGTGAGGTTTGACTTTGTCTTGAAGATTATCTACTTTTCTTTACTGATGCTGTATAGGATATCGCCTTTTTTTTCTCTCCTTTTCGTTGGGGGTTAAATCACAAATACAGTCGCTTTACATTGTCATTTTTTCCCTACACTTCAATTTGCTTCAATTTAGTCTTAGTAGTTTTGTAAATGTATTAGTTTAGGCCCTATTTGATAACTATTTGGATTTTGGTTTTTGAAAATTAATCTCATAAACACTATTACTTATAAATTTCTTTGATTTGTTATCTACTTTCTACTAATGTTTTCAAAAACCAAGCTAAGTTTTGTTTTGTTTTTAGTAGTAAAAAACTTGTTTATGTTTTTGAAATTTAAAAGAAAAGTGAAAACTATAGTAAGTGAATTGAGAGGAAACAAGTATAAATTTCTAAAACGTAAAATTAAAAACAAAATTGTTATCAAATGGGGCTTAGTTTCTGAAGTTGATTATCCAGTTAAATAGTATTGTAAAGTTGACATAGTACGGGTGGGGAGCTGTCATGACATTTTGATACGTCGTACAGTTATGCATTAAAGTCCCCATAAAATGAGTGTCTTTCAATTGCTATTTAACTGGATAGTTAGATTTGGAGATGAAATTAATATTTTTGCGAAAGTACAAGAACTAACTCGAAGCACATGAAAACACAGGACGTTCAAATGACAAAGTATAAGTACTAGAGTTACAATTTTTTTTGTCCTTTTTTTTTGTCCCCTCTCTCTCTGTTTGAGCTGTTCTATCCAAAAATTTTTTTACCTTTCATAGAGTGTAAATTACTATCTTGTAGCAACTTCTCTGGATGAGTTCTGTGAATGTGATTATGCATCAATCTCAAGCAGCGCCTTGAGCTCATTCATTAGCATATGATTTGTTCAGCTGTTTCTTATGTTGGGAATGGATTTTAGTTTGAATTCGTTCCATTGTTGATTTTCTTTGACATATACCTAATAAATGTGACCACGTAGAAATGACATATAGGTAA ATGGAATTCCAAGAAAGAGATTCGTCCATGGCGATTTCCAGGACCTCGAATTCGTATATCAATGGCCCTTCATTGACTCATTCTGCTTGGTTTGAGGTTCGGCTTTTCTATGTTCGGATTTCTCCCTGTGTGATTGCTAGCGTTCCCGACCATCTTAATCTGCGCCACCTTCGACGGGAAATTGGTGTTTCCCTTGAGATTAATGGGTCTCAAATTCCGGCCTCCGATTCCGCTTCTATTGCCCTTCGTCGTGATCGGCTCAACAAGGAATCCTCGGAGGTTACGTATGTTAGCACTGATAGCATTCGGGTTACGGGGGGTGTTGAGTTTGAGGTCTATGAGAATGAGGATTTGATTCTCTGTGGCTCTTTGGAACGAATGGAGGCCAATTGGATTAACGGGAGCGTTGGATTGGAGAACAATTCGAAGACAGGTTGGACTATGGAATGTTTTATGGCTGCGTCCATGTGTTCCGGTTCCTCGGCCTTTTTCCAGCCTAAACTTGGGGTTTCCTCGCCGGCTATTGAGGTTTATATTGCTGGTTGTTGCTCCGGTATGCCAGTGATCTTGACGCAGACAATTCAGGTTAGTCCGAGGCGGAGGAACTTGTGGCAAGGTGTCCTGGATGCAATTCCTGAGGATGAAGAAGTTGGAAAGGAGGAGAATGGAAGTAATGGGTTGATTCGGCACCAGAAAGTGCAGATGTTAGAGTCTGAAGTTGATGATTATGACCCAGATGGTAAAATGGGGCATGGTTTCTACGGTGATGATATGTACACTGGCGAAGATGGGCAGCTCTCATGGTTCAATGCAGGTGTTAGAGTGGGTGTTGGTATTGGTCTTGGAGTGTGCCTTGGAGTTGGAATTGGGGTTGGCTTGCTCATGCGTTCATACCAAACCACAACAAGACATTTTAGACGACGGTTTATGTAA MEFQERDSSMAISRTSNSYINGPSLTHSAWFEVRLFYVRISPCVIASVPDHLNLRHLRREIGVSLEINGSQIPASDSASIALRRDRLNKESSEVTYVSTDSIRVTGGVEFEVYENEDLILCGSLERMEANWINGSVGLENNSKTGWTMECFMAASMCSGSSAFFQPKLGVSSPAIEVYIAGCCSGMPVILTQTIQVSPRRRNLWQGVLDAIPEDEEVGKEENGSNGLIRHQKVQMLESEVDDYDPDGKMGHGFYGDDMYTGEDGQLSWFNAGVRVGVGIGLGVCLGVGIGVGLLMRSYQTTTRHFRRRFM Homology
BLAST of Lsi05G020650.1 vs. ExPASy Swiss-Prot
Match: Q8GUH2 (Uncharacterized protein At1g01500 OS=Arabidopsis thaliana OX=3702 GN=At1g01500 PE=2 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 2.8e-102 Identity = 193/295 (65.42%), Postives = 237/295 (80.34%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. ExPASy TrEMBL
Match: A0A0A0L3C9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121610 PE=4 SV=1) HSP 1 Score: 605.1 bits (1559), Expect = 1.6e-169 Identity = 302/310 (97.42%), Postives = 305/310 (98.39%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. ExPASy TrEMBL
Match: A0A6J1E961 (C-terminal binding protein AN-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431978 PE=4 SV=1) HSP 1 Score: 592.4 bits (1526), Expect = 1.1e-165 Identity = 295/308 (95.78%), Postives = 300/308 (97.40%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. ExPASy TrEMBL
Match: A0A6J1IQ37 (C-terminal binding protein AN-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479006 PE=4 SV=1) HSP 1 Score: 589.7 bits (1519), Expect = 7.0e-165 Identity = 294/308 (95.45%), Postives = 299/308 (97.08%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. ExPASy TrEMBL
Match: A0A1S3AVE5 (uncharacterized protein At1g01500 OS=Cucumis melo OX=3656 GN=LOC103483247 PE=4 SV=1) HSP 1 Score: 586.3 bits (1510), Expect = 7.7e-164 Identity = 295/310 (95.16%), Postives = 301/310 (97.10%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. ExPASy TrEMBL
Match: A0A6J1D0M3 (uncharacterized protein At1g01500 OS=Momordica charantia OX=3673 GN=LOC111016292 PE=4 SV=1) HSP 1 Score: 575.9 bits (1483), Expect = 1.0e-160 Identity = 284/310 (91.61%), Postives = 299/310 (96.45%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. NCBI nr
Match: XP_011650732.1 (uncharacterized protein At1g01500 [Cucumis sativus] >KGN56485.1 hypothetical protein Csa_010367 [Cucumis sativus]) HSP 1 Score: 605.1 bits (1559), Expect = 3.3e-169 Identity = 302/310 (97.42%), Postives = 305/310 (98.39%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. NCBI nr
Match: XP_038885151.1 (uncharacterized protein At1g01500 [Benincasa hispida]) HSP 1 Score: 600.1 bits (1546), Expect = 1.1e-167 Identity = 302/311 (97.11%), Postives = 306/311 (98.39%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. NCBI nr
Match: XP_022924517.1 (C-terminal binding protein AN-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 592.4 bits (1526), Expect = 2.2e-165 Identity = 295/308 (95.78%), Postives = 300/308 (97.40%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. NCBI nr
Match: XP_023526004.1 (C-terminal binding protein AN-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 592.4 bits (1526), Expect = 2.2e-165 Identity = 295/308 (95.78%), Postives = 300/308 (97.40%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. NCBI nr
Match: XP_022979196.1 (C-terminal binding protein AN-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 589.7 bits (1519), Expect = 1.4e-164 Identity = 294/308 (95.45%), Postives = 299/308 (97.08%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. TAIR 10
Match: AT1G01500.1 (Erythronate-4-phosphate dehydrogenase family protein ) HSP 1 Score: 373.2 bits (957), Expect = 2.0e-103 Identity = 193/295 (65.42%), Postives = 237/295 (80.34%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. TAIR 10
Match: AT1G19400.1 (Erythronate-4-phosphate dehydrogenase family protein ) HSP 1 Score: 213.4 bits (542), Expect = 2.6e-55 Identity = 132/306 (43.14%), Postives = 183/306 (59.80%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. TAIR 10
Match: AT1G19400.2 (Erythronate-4-phosphate dehydrogenase family protein ) HSP 1 Score: 213.4 bits (542), Expect = 2.6e-55 Identity = 132/306 (43.14%), Postives = 183/306 (59.80%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. TAIR 10
Match: AT1G75180.1 (Erythronate-4-phosphate dehydrogenase family protein ) HSP 1 Score: 203.0 bits (515), Expect = 3.5e-52 Identity = 128/314 (40.76%), Postives = 188/314 (59.87%), Query Frame = 0
BLAST of Lsi05G020650.1 vs. TAIR 10
Match: AT1G75180.3 (Erythronate-4-phosphate dehydrogenase family protein ) HSP 1 Score: 203.0 bits (515), Expect = 3.5e-52 Identity = 128/314 (40.76%), Postives = 188/314 (59.87%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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