Lsi05G009230.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGAATGAGAATGCGTATGATATGTGAAAAATACTGGAGCTGCACGTACAGCTACAAACATCACCGTCGCTCCCTCCACTCTCTCTGCTTCATCCTCCTGGTTTCACCATTGTTATCCGTGAGATCCCTTTCTCTCTGTTTATCCTCCATAGTTTCAGCAACATTAACGTTATTTTCTTTGTTCGTAACCTTACCATTCTAATAACTACTACCATTACCAACATGTGTTTTTATTTTCTTTTAAACATTGTCGATGATGAAGTTGGATTGAAACGTAGTTATATGGAGCTTGACTTTGCATATTATCCCCAACTTTCTCGTGGTTCAATCAGATTAGCATTTTGTTTTCTTTTTTCTCTCTAGACTGTAGTTGTTATGTTATGAGGCTTTATGTTCTTCGTTTTCCCGATCGAGGAATTTTAGAAAATTTGAAGTCCCTTCGCTTCAGTTCTACTTCTACTTGATTTTCTATTTTCTTCAAGCTTTTGTGCTCCCATATTGCTATTTATCGGTGCCTTTGTTTCTGGTAGCTTCTTTTACTTTATTTATCAGTCCACTTCTTCTTTTGTCATGTAAACCCTGGAATACTTTTTCTAGTTAGTACTTCTTAACATACTATTTTCAAAGAAATGGAAGATATGGGGAAATGCTCATTTCATATGCTAGTATGCCGATGGATTTTCAAATATCTATTGGGTGTGCTCGGTAAATCAATATATGTCTTAGGTGAGATGTTGTATGTTCAACTTTCTAAGAACAGTTGATTGAATTAGGTGGAATACTTAAGCGTCCAGGAATTTCAATTTATGTTTCTGATATATATCTTCTTAAAGGAGCTACTTAGTTAATATGTTAAACATGTTTGAGAGTGATTTTGAAGTGGTTAAATCATCTTTTTCATGTCTAAAATCACTCCTAATATGAGTTTTAATCATTTAAAAGCTTTTGATGGTAAGTGAATTGCATTTAAAAGCTTTTAAAAGTCTAAAACCAAACACTAAAATAGTTTTGAATGATTATTTTAAATACATGTTTTAGAAGTTACTTTGCACATGAAAAAATTCAAAGTGATTTTAACCATTTCAAATCACTCCCAAACATACCTTTTATTTCCCTTCAAGATTTCTGTAATCGAGTATTAGTTTCCCTCAATTACTCTAACAACGGTGACTTCAGATGATCCTTTCTTCTAGGCTTGTATTTTATTTTTGAGTTGATTTGGCATTTTGGAGCATCTTTAGCTTATTCTAAGCAGGTTTTAGCTTCTATTATTGTCGTTAAGTATTTCAGTTTATCACAATGCAGGGAAAATGGAAGGACAAAATGGCTGCAATAACTCTGTACGAATGCTCTCTCTGAACTTTGGTGCGAATGTCAACATTGTTTCCCAAGGACCTGGTGATTCTACAAACTATCACCATGTTTTGCCTGCTGATAGGAGTGTAAACCAAACTGATTTCCCCCACTTAACTGAGTGGACTCAAACTGCAAAAACGTCTCCGGCCTTTGTTGAGTTTATTGCTGAAACTTCAAAGTTTCCTCGAAAGGCATCAACAAAAGATGTGATAGCAGTTGTACCTAGTACTGTTCAAACTATTAATGGAGTCTCAGAGATTCGTGGCGAGATTTCATACAATCATCTCGCAGGTTCATACAGTTCAAAGCCTACTGATTCACGGGTAAGCCAATTTGTGCCAATCCTAACACATATGCAAAAGTTATGAGGGTCACTGCGCTGAAGTCAATAATAGATCTTTTAAATATAAGGATGTAGGCATATATCACCTCAAGTTCATTGCTTTCAGTTTTGAACACAATGTATGTTAACATATTTGTTTGTTAATCAATAGTCATTTCTCAATGACTCAATTATCTGGATTTTTCAAGTTATCCTAATTTGCGGTTTTTGGATCAGAACAATGCACCTGGTATTCAATCCAAATCACGTTCCAGTTCATCAAGTCGACGAGGGTATTCAGCTGATCGTGTAAGCCAAACACCTTTCTAGTTGCAACCAAAAACTTTTCTACTACTATAGGAAAGAGCAGAAATATGACGCCATGAGTGTGAATTGTGAAATATACACAAACCTATATTATTTAATCAGCCAAAGTAGCAGGACTGGATGGATGTGATCCCTTGGGGCCAATTTAACTTGTTTAATATGCTTTCTTATTCCAGCAACGCAGGATAAGGATAGCTGAAAGACTTGAAGCATTGCAGGAACTTCTTCCTCAGTCTTCAAAGGTAAAATTCTGTGTCATTATGCCATAGATAGGCATGAACTTGTATGAAGGGATAAGTGCAGAAGCAGAATTCCAAAATATCTTCAAAGCACTAACTTGACTTGAAACCGTTCCAATATTTATCATTATACAAATGCATTGAGTAAACATGATTGAGCCGTTTTGCTGTCGTAAATTTTCCTGAATTTTATTGAGGATAAAAGTAACTGAAAGCATTATCTTTTGAACTTTCCATTTCTTGACCTGCAGTATAGGCTAGCTAAGTATCTTCTTTAAATCCACTATAATTTTGGTTTCTGAAGGGAAATCAGGCATCTGCTCTAGATGATGTCATTGACCATATCAAGTACTTACAGCTTCAAATAAAGGTAGGCAGCCTACCGCTTATTGCTTTGCACGTTTCTTTATATGGCACTTTACAGCTTGTTGAAAATTTGATCCATATGTTGGTAAGAGTTTGTTTGTAGCTTGTTGGCTTCATCGGTCTTCATAACCCGCAGGTTGCAGTTTGAAACGATGTTGGTGAGGGAAAGAAAGAGGTCCATATGTTGGCAATATTGATAAAAATTTGGCTTAACAAGCCCGTAATAGTGGTGATGTTGTTTGTCATGTCATATCTGCATCTAATTTCTCAAACCATATGACCCTTGATCCAAAATATTGGAGACTTGTAAAGAGATATAGTAAGCTAGTACCAAAAATTGAGGCATGATCTTGAGCAATAACTATAAAGGGTTAGCGGTATTGTCTTTTGCTTCGTAGAGTCACCGAAAGACCATCATCATCTATTGCAACGAGGCAGACATCATTGGATGGATGACCAAACAAATTTGATAAAATTTAAGACGGTTGTTTACTATATTTTTGTGGTAGATTCGTAGTTATAATGAATAAATGTTTCTACAAACAGACGAATACTTTGAAATGGCCCGACTGTAATGATGTTGCAAGTGAAGTTGCTAAAAAAAAACTGATGTTATGAATGTAGAAGAAACTAAGACATCCATGTGTGGTTGCGCAGGACTTTAGTCAGAGCAAACTAGGAGGAGAATCATCTTCTGAGCCTTTCATATTCGTTGAGGTATCATCACTTGCTTGATTTTAACATTTCACTTTTTTCTTTTGGAATGTTCATGCAATACTCATTTATGGCTTTCTACTGTTCTTTCCATATTTCGAAATTTTGGGATGGAAAATAGAAGCTCCTTTATTATTGCTTTTGATAGGGATATGGTCATTACATGAGTCATCAAGAGATGCAGAGCGAGCCACTTGAGGAGATGGTGGGAAAATTGCTGGAAGTTGACCCATTAGCTGCAGCTCAGCTGCTGGAGAACCAGGGTCTATTTGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGAAGCATATATTCACCCATGGACATTCCTGTATGCAACAATTGTTTCTCTGTTAATACTTCTGCTTCATTAAGTCTCTTCGGTTTGTTAATCACCTGAAAGAAAAGGTACCTGAGTAACGCTGAAAAAGGATAGTTTTGTTTGTCCATAGCATATAGTTAGAAGTTGAAAAGCCTATACAAGGGAGGTGGGGGAGGAATATCATGTCTGTAAACTGATCAAACATGCATTACTTGTCATATGTCCTAAACTTAGCTTGTATCAGGTATGCATTAAGAAGCTAGAGAAGCTAGAGTATGAATCCAAAGCTTTCCTACATTTTAAAAAGGGACCATCTTGGTCTCTTCATTTTCAAAACATATTATTTT AAGAGAATGAGAATGCGTATGATATGTGAAAAATACTGGAGCTGCACGTACAGCTACAAACATCACCGTCGCTCCCTCCACTCTCTCTGCTTCATCCTCCTGGTTTCACCATTGTTATCCGGAAAATGGAAGGACAAAATGGCTGCAATAACTCTGTACGAATGCTCTCTCTGAACTTTGGTGCGAATGTCAACATTGTTTCCCAAGGACCTGGTGATTCTACAAACTATCACCATGTTTTGCCTGCTGATAGGAGTGTAAACCAAACTGATTTCCCCCACTTAACTGAGTGGACTCAAACTGCAAAAACGTCTCCGGCCTTTGTTGAGTTTATTGCTGAAACTTCAAAGTTTCCTCGAAAGGCATCAACAAAAGATGTGATAGCAGTTGTACCTAGTACTGTTCAAACTATTAATGGAGTCTCAGAGATTCGTGGCGAGATTTCATACAATCATCTCGCAGGTTCATACAGTTCAAAGCCTACTGATTCACGGAACAATGCACCTGGTATTCAATCCAAATCACGTTCCAGTTCATCAAGTCGACGAGGGTATTCAGCTGATCGTCAACGCAGGATAAGGATAGCTGAAAGACTTGAAGCATTGCAGGAACTTCTTCCTCAGTCTTCAAAGGCATCTGCTCTAGATGATGTCATTGACCATATCAAGTACTTACAGCTTCAAATAAAGGTAGGCAGCCTACCGCTTATTGCTTTGCACGTTTCTTTATATGGCACTTTACAGCTTGTTGAAAATTTGATCCATATGTTGGACTTTAGTCAGAGCAAACTAGGAGGAGAATCATCTTCTGAGCCTTTCATATTCGTTGAGGGATATGGTCATTACATGAGTCATCAAGAGATGCAGAGCGAGCCACTTGAGGAGATGGTGGGAAAATTGCTGGAAGTTGACCCATTAGCTGCAGCTCAGCTGCTGGAGAACCAGGGTCTATTTGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGAAGCATATATTCACCCATGGACATTCCTGTATGCAACAATTGTTTCTCTGTTAATACTTCTGCTTCATTAAGTCTCTTCGGTTTGTTAATCACCTGAAAGAAAAGGTACCTGAGTAACGCTGAAAAAGGATAGTTTTGTTTGTCCATAGCATATAGTTAGAAGTTGAAAAGCCTATACAAGGGAGGTGGGGGAGGAATATCATGTCTGTAAACTGATCAAACATGCATTACTTGTCATATGTCCTAAACTTAGCTTGTATCAGGTATGCATTAAGAAGCTAGAGAAGCTAGAGTATGAATCCAAAGCTTTCCTACATTTTAAAAAGGGACCATCTTGGTCTCTTCATTTTCAAAACATATTATTTT ATGGAAGGACAAAATGGCTGCAATAACTCTGTACGAATGCTCTCTCTGAACTTTGGTGCGAATGTCAACATTGTTTCCCAAGGACCTGGTGATTCTACAAACTATCACCATGTTTTGCCTGCTGATAGGAGTGTAAACCAAACTGATTTCCCCCACTTAACTGAGTGGACTCAAACTGCAAAAACGTCTCCGGCCTTTGTTGAGTTTATTGCTGAAACTTCAAAGTTTCCTCGAAAGGCATCAACAAAAGATGTGATAGCAGTTGTACCTAGTACTGTTCAAACTATTAATGGAGTCTCAGAGATTCGTGGCGAGATTTCATACAATCATCTCGCAGGTTCATACAGTTCAAAGCCTACTGATTCACGGAACAATGCACCTGGTATTCAATCCAAATCACGTTCCAGTTCATCAAGTCGACGAGGGTATTCAGCTGATCGTCAACGCAGGATAAGGATAGCTGAAAGACTTGAAGCATTGCAGGAACTTCTTCCTCAGTCTTCAAAGGCATCTGCTCTAGATGATGTCATTGACCATATCAAGTACTTACAGCTTCAAATAAAGGTAGGCAGCCTACCGCTTATTGCTTTGCACGTTTCTTTATATGGCACTTTACAGCTTGTTGAAAATTTGATCCATATGTTGGACTTTAGTCAGAGCAAACTAGGAGGAGAATCATCTTCTGAGCCTTTCATATTCGTTGAGGGATATGGTCATTACATGAGTCATCAAGAGATGCAGAGCGAGCCACTTGAGGAGATGGTGGGAAAATTGCTGGAAGTTGACCCATTAGCTGCAGCTCAGCTGCTGGAGAACCAGGGTCTATTTGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGA MEGQNGCNNSVRMLSLNFGANVNIVSQGPGDSTNYHHVLPADRSVNQTDFPHLTEWTQTAKTSPAFVEFIAETSKFPRKASTKDVIAVVPSTVQTINGVSEIRGEISYNHLAGSYSSKPTDSRNNAPGIQSKSRSSSSSRRGYSADRQRRIRIAERLEALQELLPQSSKASALDDVIDHIKYLQLQIKVGSLPLIALHVSLYGTLQLVENLIHMLDFSQSKLGGESSSEPFIFVEGYGHYMSHQEMQSEPLEEMVGKLLEVDPLAAAQLLENQGLFVMPMDFVEGLC Homology
BLAST of Lsi05G009230.1 vs. ExPASy Swiss-Prot
Match: Q8S3D5 (Transcription factor LRL2 OS=Arabidopsis thaliana OX=3702 GN=LRL2 PE=2 SV=2) HSP 1 Score: 65.9 bits (159), Expect = 8.8e-10 Identity = 79/279 (28.32%), Postives = 126/279 (45.16%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy Swiss-Prot
Match: Q9ZUG9 (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.4e-09 Identity = 61/183 (33.33%), Postives = 92/183 (50.27%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy Swiss-Prot
Match: Q9LSQ3 (Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 9.7e-09 Identity = 58/178 (32.58%), Postives = 95/178 (53.37%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy Swiss-Prot
Match: D0PX88 (bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08 Identity = 60/199 (30.15%), Postives = 93/199 (46.73%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy Swiss-Prot
Match: O22768 (Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 5.3e-07 Identity = 53/165 (32.12%), Postives = 88/165 (53.33%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy TrEMBL
Match: A0A0A0KHM8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G409980 PE=4 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 7.5e-113 Identity = 227/289 (78.55%), Postives = 242/289 (83.74%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy TrEMBL
Match: A0A1S3BMP9 (transcription factor bHLH69-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491334 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.6e-110 Identity = 224/290 (77.24%), Postives = 241/290 (83.10%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy TrEMBL
Match: A0A1S3BM32 (transcription factor bHLH69-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103491334 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.6e-110 Identity = 224/290 (77.24%), Postives = 241/290 (83.10%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy TrEMBL
Match: A0A1S3BN01 (transcription factor bHLH69-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491334 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.6e-110 Identity = 224/290 (77.24%), Postives = 241/290 (83.10%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. ExPASy TrEMBL
Match: A0A1S3BLG0 (transcription factor bHLH69-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491334 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.6e-110 Identity = 224/290 (77.24%), Postives = 241/290 (83.10%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. NCBI nr
Match: XP_038887382.1 (transcription factor LRL2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121 Identity = 242/290 (83.45%), Postives = 251/290 (86.55%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. NCBI nr
Match: XP_038887384.1 (transcription factor LRL2-like isoform X2 [Benincasa hispida] >XP_038887385.1 transcription factor LRL2-like isoform X2 [Benincasa hispida] >XP_038887386.1 transcription factor LRL2-like isoform X2 [Benincasa hispida]) HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121 Identity = 242/290 (83.45%), Postives = 251/290 (86.55%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. NCBI nr
Match: XP_031742486.1 (transcription factor bHLH69 [Cucumis sativus] >KAE8647323.1 hypothetical protein Csa_004419 [Cucumis sativus]) HSP 1 Score: 416.8 bits (1070), Expect = 1.5e-112 Identity = 227/289 (78.55%), Postives = 242/289 (83.74%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. NCBI nr
Match: KAG7036370.1 (Transcription factor bHLH69 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 409.5 bits (1051), Expect = 2.5e-110 Identity = 226/292 (77.40%), Postives = 243/292 (83.22%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. NCBI nr
Match: XP_008449454.1 (PREDICTED: transcription factor bHLH69-like isoform X3 [Cucumis melo]) HSP 1 Score: 409.1 bits (1050), Expect = 3.2e-110 Identity = 224/290 (77.24%), Postives = 241/290 (83.10%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. TAIR 10
Match: AT5G64980.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18 Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. TAIR 10
Match: AT4G30980.1 (LJRHL1-like 2 ) HSP 1 Score: 65.9 bits (159), Expect = 6.2e-11 Identity = 79/279 (28.32%), Postives = 126/279 (45.16%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. TAIR 10
Match: AT2G24260.1 (LJRHL1-like 1 ) HSP 1 Score: 63.5 bits (153), Expect = 3.1e-10 Identity = 61/183 (33.33%), Postives = 92/183 (50.27%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. TAIR 10
Match: AT5G58010.1 (LJRHL1-like 3 ) HSP 1 Score: 62.4 bits (150), Expect = 6.9e-10 Identity = 58/178 (32.58%), Postives = 95/178 (53.37%), Query Frame = 0
BLAST of Lsi05G009230.1 vs. TAIR 10
Match: AT4G02590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-08 Identity = 53/165 (32.12%), Postives = 88/165 (53.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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