Lsi05G000560.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G000560.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontobamovirus multiplication protein 2B
Locationchr05: 1148532 .. 1153284 (+)
Sequence length757
RNA-Seq ExpressionLsi05G000560.1
SyntenyLsi05G000560.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTTTCAATTTGGAGAGGGAAAAAAACGAATAAAACACAAGATTGTGTTCTTTAACTTAAAATTAATCGGGAGAGAGAGAGAGGCCAACAATGGCGACCGCTTCCGCATCAGGTCGAAGCAACAGGGATGGAACGGCCAAAGCCATGGTGGCCGATCACATTTCTCAATCGGTACGATCCACTTCAAATCTCCTTCATCTAATGCAGCAATCTTCTTCGACTCAGGCATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTTTTATCGTTTGTGTTTTCTGAAGCTTCACGAGTTCATTCGAACGGTACTCTTAGGAGTAGAATCGGTAGAGGTGATTCCTGAATTTGTTCGATATATGTTTTTTAGATTTCATTTTCGTTCTATCTCGCGAGTTCTTTAGGACTGTTGATGACGATCTTGAATCATATGAATAGATGATTGAATTTCCAAACCTTAATTGTTCGTTTTGTATCTTTTCCACTTTCTAGCTTCAGTTAATTGGGAAACCACGTTCTGTTTTGAAGAAATTGTGTAATATTGTACTGAAAATTGACTGTGTGAGTATTGTTGGAAGTCATAGTTTCAAGTTATCCCTACCTTGTACAATTGAATTGGAATTTGCCTCTGATTTTTCTCTTCACATTTGTCTACGTGAGATGGATTCAACTCGCGGAAGTTTTAGTCATATTGCTAAAATGCAATTTTGTTTGAGATTTTTTCTTATTGCATTGCTTTCAGACTTTCAGTTCAGTTTGTCACGTAGTTCCGTCTTGTCTGCAGGCTCAGTTAATAAAGTTGCCAAAGAATCTTTTGGCGAAAGCACCTACTATTAAAAATACTGGGAAAGTATGTAGCATCAGACATCAGTTAATAACTTGAACATATTCTTATTTCGTTTCTTTATTTCTTAACAAAAAAACTTCTGATAGTACTTTCTCCTTTCATCTTGTGATGCAGATCTTAGAGCAGATGCCACAGGTGGTTTCATCATTAGATGCATATTTTGAGAAGGGACTTGAAAGGTTATTTTTGTCCTTGAACATGCATTGCTGGAATTAATTCTATTTCTACGTTCAAATGTATAAGCTCATGCGTTATTTCTTTGGTGAAGAAACCCATGATTTCCATTAAACTTCATAACAATTATTGAAGCACATTAGTAAATGCTTTGTTTTCCAGTGATATATTGATAACCGACATCTTTCATATTAAAATCGATATGGCTGAGACAGAGGGGAGGTTGGATGATTCTTTGAAAGAGGAAAGAGAGACTTTGATGGTGGAATTTGCTGACCTAATCAGGAAAGAGACCAGCAGCTGGAGCAAAAGGCTAAGGTCATTTGGGCTAAAGAGGGGGATTGTAACTCGTCTTTCTTTCATAGGGTGGCTAGTGGTAAGAAAAGTAAGAACACCATTGGCTCTTTGGAAAGTGATAGTAGGGAGATTGTTCGAAAAGAGAAGGATTTTGAGGGGAGGAGGTTTTATCCTTGTTTTTTAACCTCTGACTCCTAAACCCTTTGTTCATGGTATTGATTGGTGTTCTATTTCTGAAAGGGAAACGCTCGAGTTGCTTGCTCCCTTTTCCCTCGAGTAGATTAGGAGAGCGGTGTTTGGGAGTGATAGGAACAAATCCCCATGTTTAGATGGTTTCTCCATGGTGTTCTATCAGGATAATTGGGATTGTGTAAAGGGGGGTTTAGAAGGAGTTTTTAAGGAATTCTTCGACAGCATCTGGAACAATTCTACCTCTGAAATTGTTGTGTGCCTTATCCCTAAGAAGATAAAGCCAACAAGATTAAGGACTTTTGCCCTATTGTCCTCATCACAAGCGTTTATAAAATTATTGCTAAGGTCTTGGCCAATCGTTTGAAAAAGGTTCTCCCATCGACGATTTCTGGGTTGCAAGGAATGTTTATAGCTGGGAGGCCGATTCTTAAGCAAGCTCTTATAGCTAATGAAGCCACAGAGGATTACAGTCAAAAGAAGAAAGGAGTGGTCCACAAAATTGATTTTGAAAAAGGCTTATGATCATGTGGATTGTAATTTTTTGGACTAGATTTTGTAAAAGAAAGGGTTTGGGTATAAATGAAAAAATGTGGATGTGGAGTTGCGAGAAATGTTAGCTACTCTTTTCTTATCAATGGTAGTCTGAGGGGTAAGATAAAGGGTACGAGAGACCTTAGACAGGGTGACTCTTTATCCCCCTTTCCTCTTCCTGTTAGTGGTGGATGTCTTGAGTATGATTGTCACTAAAGGAATGCAAGGTCAAGTGATTGAACCCTTTTGAGGTTGGCAGAAAGTGGTCTTATCCCATCTTCTATTTGCCAATGATACCATCTTTTTCTATTTCAGAAAGGTGGGTTCTTTCTTTTTACCAAACCATATTCTAGCCTTCTTTGAAACCATGTCAGGGCTTAGGATCAAAATGGGTGAGTGTCAGATTATGGGTATTAACTGTGACCCGGAGAAGCTCAAGAGTTGGGTTGAGGAGGTGAGTTGTGACTTAGGTTCTTTTCCCTCCTCTTACTTAGGGCTCCCCCTTGGAAGCAATCTAAAGACAATCTCTTTTTGGAATCTAGTGGTGGGTATTAGAAAAAAAACTGGCCTTGAGGAAGAATTGCTTCTTCTCTAGAGCTGGTAGATTATTACTTATTCCTTGTGTTAGATGATATAATATTAAATTTACCTTCACCCATCAGCTTAACCTTTTGGGTCAATTGGCGATTTAAGATAAAATTAAATTTATCTTCACCCATCATCTTAAGCTTTTGGGTCAATCGACAATTTAACATGGTATCAGAGTAGGTGGTCTACGGAGGTCCTGTGTTCAAGTCCCTTCAATGTTATTTCCTCCCCAGTTAATATCATTTCCACTTGTTGGATCTTATTCATATATTAAGCCCACAAGTGAGGGGGAGTGTTTGATGATATAAGATTAAATTTTCCTTCATCCATCAGCTTAACCTTTTGAGTCAATCGACGATTTAACACCTTCTATTCTGAGTGGTATTCCCATTTACTATTCCTCCATGTTTAGAGCCCCTAGCTTGGTTTGTAAGAGAAGCTCATGCATAACTTCCTTTAAGAAGGAGTTAAAAGAAGGTAAGAGATCACATATGATGAGATGGGAGATTGCTGAGAAGCTTGTAAACCCTTTTGAGTGGTTGTCGGGTGAAGTTAAAGGCATCTATCGGAATCTATGAAAAGAGATTTCTTATAAGCTCTTCTCTTTCTCTCTCAATTTGTCCATTGTGTGGTGGGGAAAGGGAATGAAAGGTACTCCTAGGAGAATATGTGGGTGGGTGATAGACCCCTCTGCTCTTTGTTTCCTCGTCTCTATCATTTGTCCTCCTTCAAAAATCGTTTGGGGGGTGATTTCATGTATGGTCCCTTGTTAGATTTCATGTTTCCCTCTAGACTTCGACTTCGAAGAGCTTTTGTAATTATCTTTTAAGTTATCTTTTGTACAATTAGATCCCTTTCATTTATAAGGGTTTCCTTTTGAGAACTTTTCTTTTTGTATCTCATTGTATTCTTTCATTAATTCTCAATGAAAGTTATTGTTTCAATTATAAAAAAATTATTAAAATTGATAAGTTTATCAAGGATGATAAATGCTCTGGTTCTATTTTGTTATAAGTTTTTTTTGTATGTACCACAAAATCTTATAGCTTGTTTAGGAGTGATTTTGAAATAGTTAAAATCACTCCAAAACATGCTTTCAATGACTCAAAATCAATTTTGATTGCATAAATATCATGTTTAAAAATGTAAAATCAAACATTATATTGATTTTGAATAATTAAGGGCATGTTTTGGAGTGATTTGAACTTGACAAAAGTTATTTTAACCCTTTCAAAATCACTCCCTAACATGCCTTGAGAATGCTAGGATTCTGCTATTGCAAAGAAAACAACTTCCAAGAATGCTAGGATTTTGAATAATTTTTGTTGGCCCGAAGGAATTAATATCAATGGATGATGCCCGATGGCATTGTAGGCTATCCATTAGGCAGATATTTCACTATATTGTCTGAATTACTACTTTGTTCTTGCCATTTGGTATGTCTAGTAAAAGTTGCTTGTACTTTTACTCGACCCTCCACAAGAACAAGTGTTCTATGTTGCATTTTAAGACAAACCCCTTCTTTCTCAATATATAGTTCTATGTCTACTGATCAATTTTGCTTCTGTCTTGGTTTACTTGATTCTGAATGTTTGCAGCATTCCTCATCTGCAGACAGTCGTGCAATTACTTGCAAACATGGAAAGCTCCCAGCTGAAATCTCTCTCTCAATTCCAACACCCTCAAAAGGTTCGACTTCTCCAACCCCTTTTCTCCCTCGGGATGAGGGGTTGTCTTGTTTTGTTCGTTCTATGGTAGTTTGTTGACTCAATTTCTTATGTTTAACTGCTCTCCCAGGAAAGTGAGTCTCGTCGTCAACTGAAAGATGTGGACTAATAGTTCTGTCCTTCCAAAACATGTTAAGACAAGCCATAAGAGTAAATACCCTAACCTTTTTCCTTCTTGTCCTTGGCTGTGGGATGGTATTGTATGTCTGTTGCCTCAATTTCACCATTTGCTTCAAGGAAGTTGATTTCCCTTCATCAACCAAACGACACGAACAGTGTCGTTCTAATAGTTTCCTGCTTTTAAATCTAAACTTTGTTGCTGACCATGTAAAAGAGTAAAATGAAATTAACAAACTGCCACATATCTGTATATCTTTTTGTTTTTTTTT

mRNA sequence

AAAATTTTCAATTTGGAGAGGGAAAAAAACGAATAAAACACAAGATTGTGTTCTTTAACTTAAAATTAATCGGGAGAGAGAGAGAGGCCAACAATGGCGACCGCTTCCGCATCAGGTCGAAGCAACAGGGATGGAACGGCCAAAGCCATGGTGGCCGATCACATTTCTCAATCGACTTTCAGTTCAGTTTGTCACGTAGTTCCGTCTTGTCTGCAGGCTCAGTTAATAAAGTTGCCAAAGAATCTTTTGGCGAAAGCACCTACTATTAAAAATACTGGGAAAATCTTAGAGCAGATGCCACAGGTGGTTTCATCATTAGATGCATATTTTGAGAAGGGACTTGAAAGCATTCCTCATCTGCAGACAGTCGTGCAATTACTTGCAAACATGGAAAGCTCCCAGCTGAAATCTCTCTCTCAATTCCAACACCCTCAAAAGGAAAGTGAGTCTCGTCGTCAACTGAAAGATGTGGACTAATAGTTCTGTCCTTCCAAAACATGTTAAGACAAGCCATAAGAGTAAATACCCTAACCTTTTTCCTTCTTGTCCTTGGCTGTGGGATGGTATTGTATGTCTGTTGCCTCAATTTCACCATTTGCTTCAAGGAAGTTGATTTCCCTTCATCAACCAAACGACACGAACAGTGTCGTTCTAATAGTTTCCTGCTTTTAAATCTAAACTTTGTTGCTGACCATGTAAAAGAGTAAAATGAAATTAACAAACTGCCACATATCTGTATATCTTTTTGTTTTTTTTT

Coding sequence (CDS)

ATGGCGACCGCTTCCGCATCAGGTCGAAGCAACAGGGATGGAACGGCCAAAGCCATGGTGGCCGATCACATTTCTCAATCGACTTTCAGTTCAGTTTGTCACGTAGTTCCGTCTTGTCTGCAGGCTCAGTTAATAAAGTTGCCAAAGAATCTTTTGGCGAAAGCACCTACTATTAAAAATACTGGGAAAATCTTAGAGCAGATGCCACAGGTGGTTTCATCATTAGATGCATATTTTGAGAAGGGACTTGAAAGCATTCCTCATCTGCAGACAGTCGTGCAATTACTTGCAAACATGGAAAGCTCCCAGCTGAAATCTCTCTCTCAATTCCAACACCCTCAAAAGGAAAGTGAGTCTCGTCGTCAACTGAAAGATGTGGACTAA

Protein sequence

MATASASGRSNRDGTAKAMVADHISQSTFSSVCHVVPSCLQAQLIKLPKNLLAKAPTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKESESRRQLKDVD
Homology
[Close]
BLAST of Lsi05G000560.1 vs. ExPASy Swiss-Prot
Match: Q8H960 (Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-21
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MATASASGR--SNRDGTAKAMVADHISQSTFS--SVCHVV--PSCLQAQLIKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+  S  ++ H++   S  QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  APTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQ 110
           A   K TG+ L Q+PQV+SSLDA+ E GL S  HL TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

[Close]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match: A0A0A0LI80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904110 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.2e-42
Identity = 106/131 (80.92%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATAS SGRSNRDGTAKAMVADHISQS  + S++ H++   S  QAQL KLPKNLLAKA 
Sbjct: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKAS 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
           T+KNTGKILEQMPQVVSSLDAY EKGLESIP LQTVVQLL NMESSQLKSLSQFQHPQ+E
Sbjct: 61  TMKNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120

Query: 121 SESRRQLKDVD 128
           SES  Q KDVD
Sbjct: 121 SESLPQPKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1GL95 (tobamovirus multiplication protein 2B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455403 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.9e-42
Identity = 106/142 (74.65%), Postives = 114/142 (80.28%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV-------------PSCLQAQLI 60
           MATASASGRSNRDGTAK MVADHISQS  + S++ H++              SCLQAQL 
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQLSLSYSSSCLQAQLA 60

Query: 61  KLPKNLLAKAPTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLK 120
           KLPKNLLAKA TIKNT KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLK
Sbjct: 61  KLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLK 120

Query: 121 SLSQFQHPQKESESRRQLKDVD 128
           SLSQ QHP++E ES  QLKDVD
Sbjct: 121 SLSQIQHPKEEIESLHQLKDVD 142

[Close]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match: A0A1S3CRH1 (tobamovirus multiplication protein 2B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503510 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATAS SGRSNRDGTAKAMVADHISQS  + S++ H++   S  QAQL KLPKNLLAKA 
Sbjct: 1   MATASPSGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLRKLPKNLLAKAS 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
           T++NTGKILEQMPQVVSSLDAY EKGLESIP LQTVVQLL NMESSQLKSLSQFQHPQ+E
Sbjct: 61  TMRNTGKILEQMPQVVSSLDAYVEKGLESIPRLQTVVQLLTNMESSQLKSLSQFQHPQEE 120

Query: 121 SESRRQLKDVD 128
           SES  Q KDVD
Sbjct: 121 SESLHQPKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1DSI3 (tobamovirus multiplication protein 2B OS=Momordica charantia OX=3673 GN=LOC111023492 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 105/131 (80.15%), Postives = 112/131 (85.50%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATASAS RS RDGTAKAMVADHISQS  + S++ H++   S  QAQLIKLPKNLLAKAP
Sbjct: 1   MATASASARSGRDGTAKAMVADHISQSVRSTSNLLHLMQQSSPAQAQLIKLPKNLLAKAP 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
            IKNTGKILEQMP+VVSSLDAY EKGLESIP LQTVVQLLANMES QLKSLSQ QHPQ+E
Sbjct: 61  AIKNTGKILEQMPKVVSSLDAYVEKGLESIPRLQTVVQLLANMESCQLKSLSQIQHPQEE 120

Query: 121 SESRRQLKDVD 128
            ES  QLKDVD
Sbjct: 121 IESPHQLKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match: A0A6J1GLF5 (tobamovirus multiplication protein 2B isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455403 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 104/131 (79.39%), Postives = 112/131 (85.50%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATASASGRSNRDGTAK MVADHISQS  + S++ H++   S  QAQL KLPKNLLAKA 
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQAQLAKLPKNLLAKAS 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
           TIKNT KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLKSLSQ QHP++E
Sbjct: 61  TIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLKSLSQIQHPKEE 120

Query: 121 SESRRQLKDVD 128
            ES  QLKDVD
Sbjct: 121 IESLHQLKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match: XP_038877830.1 (tobamovirus multiplication protein 2B isoform X1 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 5.7e-43
Identity = 107/131 (81.68%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATASASGRSNRDGTAKAMVADHISQS  + S++ H++   S  QAQL KLPKNLLAK P
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLTKLPKNLLAKTP 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
           TIKN GKILEQMPQVVSSLDAY EKGLESIPHL+TVVQLL NMESSQLKSLSQFQ P +E
Sbjct: 61  TIKNIGKILEQMPQVVSSLDAYVEKGLESIPHLKTVVQLLTNMESSQLKSLSQFQQPHEE 120

Query: 121 SESRRQLKDVD 128
           SES RQLKDVD
Sbjct: 121 SESLRQLKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match: KAG7011518.1 (Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.7 bits (465), Expect = 9.7e-43
Identity = 106/127 (83.46%), Postives = 109/127 (85.83%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQSTFSSVCHVVPSCLQAQLIKLPKNLLAKAPTIKN 60
           MATASASGRSNRDGTAKAMVADHISQS   S      SCLQAQL KLPKNLLAKA TIKN
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSLSLSYS---SSCLQAQLAKLPKNLLAKASTIKN 60

Query: 61  TGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKESESR 120
           T KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLKSLSQ QHP++E ES 
Sbjct: 61  TEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLKSLSQIQHPKEEIESL 120

Query: 121 RQLKDVD 128
            QLKDVD
Sbjct: 121 HQLKDVD 124

[Close]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match: XP_023553906.1 (tobamovirus multiplication protein 2B isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-42
Identity = 107/142 (75.35%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV-------------PSCLQAQLI 60
           MATASASGRSNRDGTAKAMVADHISQS  + S++ H++              SCLQAQL 
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQLSLSYSSSCLQAQLA 60

Query: 61  KLPKNLLAKAPTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLK 120
           KLPKNLLAKA TIKNT KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLK
Sbjct: 61  KLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLK 120

Query: 121 SLSQFQHPQKESESRRQLKDVD 128
           SLSQ QHP++E ES  QLKDVD
Sbjct: 121 SLSQIQHPKEEIESVHQLKDVD 142

[Close]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match: KAG6571829.1 (Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV--PSCLQAQLIKLPKNLLAKAP 60
           MATASASGRSNRDGTAKAMVADHISQS  + S++ H++   S  QAQL KLPKNLLAKA 
Sbjct: 1   MATASASGRSNRDGTAKAMVADHISQSVRSTSNLLHLMQQSSSAQAQLAKLPKNLLAKAS 60

Query: 61  TIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQFQHPQKE 120
           TIKNT KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLKSLSQ QHP++E
Sbjct: 61  TIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLKSLSQIQHPKEE 120

Query: 121 SESRRQLKDVD 128
            ES  QLKDVD
Sbjct: 121 IESLHQLKDVD 131

[Close]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match: XP_022952816.1 (tobamovirus multiplication protein 2B isoform X1 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 106/142 (74.65%), Postives = 114/142 (80.28%), Query Frame = 0 

Query: 1   MATASASGRSNRDGTAKAMVADHISQS--TFSSVCHVV-------------PSCLQAQLI 60
           MATASASGRSNRDGTAK MVADHISQS  + S++ H++              SCLQAQL 
Sbjct: 1   MATASASGRSNRDGTAKGMVADHISQSVRSTSNLLHLMQQSSSAQLSLSYSSSCLQAQLA 60

Query: 61  KLPKNLLAKAPTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLK 120
           KLPKNLLAKA TIKNT KILEQMPQVVSSLDAY EKGLESIPHLQTVVQLL NMES+QLK
Sbjct: 61  KLPKNLLAKASTIKNTEKILEQMPQVVSSLDAYVEKGLESIPHLQTVVQLLTNMESTQLK 120

Query: 121 SLSQFQHPQKESESRRQLKDVD 128
           SLSQ QHP++E ES  QLKDVD
Sbjct: 121 SLSQIQHPKEEIESLHQLKDVD 142

[Close]
BLAST of Lsi05G000560.1 vs. TAIR 10
Match: AT1G32370.1 (tobamovirus multiplication 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MATASASGR--SNRDGTAKAMVADHISQSTFS--SVCHVV--PSCLQAQLIKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+  S  ++ H++   S  QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  APTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQ 110
           A   K TG+ L Q+PQV+SSLDA+ E GL S  HL TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

[Close]
BLAST of Lsi05G000560.1 vs. TAIR 10
Match: AT1G32370.2 (tobamovirus multiplication 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MATASASGR--SNRDGTAKAMVADHISQSTFS--SVCHVV--PSCLQAQLIKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+  S  ++ H++   S  QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  APTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQ 110
           A   K TG+ L Q+PQV+SSLDA+ E GL S  HL TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

[Close]
BLAST of Lsi05G000560.1 vs. TAIR 10
Match: AT1G32370.3 (tobamovirus multiplication 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MATASASGR--SNRDGTAKAMVADHISQSTFS--SVCHVV--PSCLQAQLIKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+  S  ++ H++   S  QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  APTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQ 110
           A   K TG+ L Q+PQV+SSLDA+ E GL S  HL TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

[Close]
BLAST of Lsi05G000560.1 vs. TAIR 10
Match: AT1G32370.4 (tobamovirus multiplication 2B )

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-22
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 0 

Query: 1   MATASASGR--SNRDGTAKAMVADHISQSTFS--SVCHVV--PSCLQAQLIKLPKNLLAK 60
           MATAS + R  S  D TAKA+VAD ISQ+  S  ++ H++   S  QAQL KLPKNLLAK
Sbjct: 1   MATASENSRGISGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAK 60

Query: 61  APTIKNTGKILEQMPQVVSSLDAYFEKGLESIPHLQTVVQLLANMESSQLKSLSQ 110
           A   K TG+ L Q+PQV+SSLDA+ E GL S  HL TV QLL NMES+QL++L Q
Sbjct: 61  ASLTKATGQALAQLPQVISSLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQ 115

The following BLAST results are available for this feature:
BLAST of Lsi05G000560.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8H9606.4e-2158.26Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B P... [more]
BLAST of Lsi05G000560.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI805.2e-4280.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G904110 PE=4 SV=1[more]
A0A6J1GL958.9e-4274.65tobamovirus multiplication protein 2B isoform X1 OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3CRH11.2e-4180.15tobamovirus multiplication protein 2B isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1DSI32.6e-4180.15tobamovirus multiplication protein 2B OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A6J1GLF52.6e-4179.39tobamovirus multiplication protein 2B isoform X2 OS=Cucurbita moschata OX=3662 G... [more]
BLAST of Lsi05G000560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877830.15.7e-4381.68tobamovirus multiplication protein 2B isoform X1 [Benincasa hispida][more]
KAG7011518.19.7e-4383.46Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_023553906.18.2e-4275.35tobamovirus multiplication protein 2B isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6571829.11.8e-4180.15Tobamovirus multiplication protein 2B, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022952816.11.8e-4174.65tobamovirus multiplication protein 2B isoform X1 [Cucurbita moschata][more]
BLAST of Lsi05G000560.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G32370.14.5e-2258.26tobamovirus multiplication 2B [more]
AT1G32370.24.5e-2258.26tobamovirus multiplication 2B [more]
AT1G32370.34.5e-2258.26tobamovirus multiplication 2B [more]
AT1G32370.44.5e-2258.26tobamovirus multiplication 2B [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..127

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi05G000560Lsi05G000560gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G000560.1.exon.5Lsi05G000560.1.exon.5exon
Lsi05G000560.1.exon.4Lsi05G000560.1.exon.4exon
Lsi05G000560.1.exon.3Lsi05G000560.1.exon.3exon
Lsi05G000560.1.exon.2Lsi05G000560.1.exon.2exon
Lsi05G000560.1.exon.1Lsi05G000560.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G000560.1.five_prime_UTR.1Lsi05G000560.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G000560.1.CDS.1Lsi05G000560.1.CDS.1CDS
Lsi05G000560.1.CDS.2Lsi05G000560.1.CDS.2CDS
Lsi05G000560.1.CDS.3Lsi05G000560.1.CDS.3CDS
Lsi05G000560.1.CDS.4Lsi05G000560.1.CDS.4CDS
Lsi05G000560.1.CDS.5Lsi05G000560.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi05G000560.1.three_prime_UTR.1Lsi05G000560.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi05G000560.1Lsi05G000560.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004601 peroxidase activity