Lsi04G005130.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005130.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like
Location	chr04: 4766256 .. 4767575 (+)
Sequence length	1171
RNA-Seq Expression	Lsi04G005130.1
Synteny	Lsi04G005130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACACTGGTGGGTGCAAATAGATAATCCATCGATAAACCCTTCCTCTACGCTTTCGCTAAGCTAAACCCGTGCAGCAGATAAAGATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGTAAGTTTCCCCTTCTCTTCCCATCATTTCCAAATGTCTGAATTTTACATACGATTTCTTTTCTGTTCAGGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGGTATGAAATATGCTACCGTCGCTGTCACATTTTGATTTAACATAATAAATCTCTTTACTTATGTTATTCTCAACAACAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAACACAAGTCCTTCCTGCACCATAATTCATTTTGTTAATCTGATTTACCAAAGCGATTGTCCAGATATGAGTTCAATTTGTTCTTGAATGAACTATCAGAGATCTAGAGAGGATAACGATAGAATGATAGAACTTGGATGAAAGCAAACGGAAAGTCTTCATTTTCAACTGGATTGTAGCCGAAAACTTTAGTGTACTGCTAAAATATTAGATGCCTTTATGAGCAATATAAATTGTTTTAGCTGTACGGTAAGATGAGAGCTGTTATTTAAGTATATCTTGATTTTGAATTATGGATGTTAAACTTATCATTACAGGATGCATAATTTTTTTCGTATCGGAGGAGCCCGAAAATAATATTCCAAAGCTTTGGATCTGGTGTATCATAAGGGATTTGCCTCAACCGGATTGAATTTTCACTATTATTTGTATACATTACAGACGAAACAGAAGGACTTCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTTATGTACATATCTTATTATTTATAATTTATAATAATTATATACACTAATTGTTCGATTTTCTGCC

mRNA sequence

AAAACACTGGTGGGTGCAAATAGATAATCCATCGATAAACCCTTCCTCTACGCTTTCGCTAAGCTAAACCCGTGCAGCAGATAAAGATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAACACAAGTCCTTCCTGCACCATAATTCATTTTGTTAATCTGATTTACCAAAGCGATTGTCCAGATATGAGTTCAATTTGTTCTTGAATGAACTATCAGAGATCTAGAGAGGATAACGATAGAATGATAGAACTTGGATGAAAGCAAACGGAAAGTCTTCATTTTCAACTGGATTGTAGCCGAAAACTTTAGTGTACTGCTAAAATATTAGATGCCTTTATGAGCAATATAAATTGTTTTAGCTGTACGGTAAGATGAGAGCTGTTATTTAAGTATATCTTGATTTTGAATTATGGATGTTAAACTTATCATTACAGGATGCATAATTTTTTTCGTATCGGAGGAGCCCGAAAATAATATTCCAAAGCTTTGGATCTGGTGTATCATAAGGGATTTGCCTCAACCGGATTGAATTTTCACTATTATTTGTATACATTACAGACGAAACAGAAGGACTTCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTTATGTACATATCTTATTATTTATAATTTATAATAATTATATACACTAATTGTTCGATTTTCTGCC

Coding sequence (CDS)

ATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAA

Protein sequence

MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT

Homology

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-36
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 67  EYKFPDPIPEFAVAETEKFRAHLLQKL--SKKDIYGDSVQEVVGICTEIFNTFMHTEYGG 126
           +YKFPDPIPEFA  ET KFR H+  +L   K+D +GD V+E+V +CTEI  TF+  +Y G
Sbjct: 64  DYKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEIMGTFLENDYRG 123

Query: 127 PGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGD 174
           PGTLLV PF+DM   I ERGLPG PQAARAA+ WA+ +VDKDW  WTG+
Sbjct: 124 PGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNVDKDWKAWTGE 172

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.7e-36
Identity = 76/157 (48.41%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 21  LHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAA--EYKFPDPIPEFA 80
           L+ P L LS  S PS+      +L    +   +P+        +AA  +YKFPDPIPEFA
Sbjct: 15  LNPPLLTLSASSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAKNAAYDDYKFPDPIPEFA 74

Query: 81  VAETEKFRAHLLQKLSKK--DIYGDSVQEVVGICTEIFNTFMHTEYGGPGTLLVLPFIDM 140
             ET KF+ H++ +L +K  D +G+ V+E+V +CTEI  TF+  +Y GPGTLLV PF+DM
Sbjct: 75  AQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLEHDYCGPGTLLVHPFLDM 134

Query: 141 SDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGD 174
              I ERGLPG PQAARAA+ WA+ ++DKDW  WTG+
Sbjct: 135 KGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGE 171

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL
Match: A0A6J1KAW7 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492617 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 149/176 (84.66%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFA+AETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAIAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL
Match: A0A6J1GWZ9 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458286 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78
Identity = 150/177 (84.75%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP-SSSFP 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQP SSSF 
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSFG 60

Query: 61  NHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMH 120
           N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMH
Sbjct: 61  NQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMH 120

Query: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL
Match: A0A0A0KTS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603340 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.4e-76
Identity = 150/178 (84.27%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSL-LPLHKPNLPLSFFS-IPSTPFQHTRLLSPTLTLPFQPSSSF 60
           MAWT  ++SPSF+LLPSL  P HKP+LP SFFS  PSTP +    LSPTLTL   PSSSF
Sbjct: 1   MAWT--TTSPSFNLLPSLFFPFHKPSLPPSFFSNNPSTPLR----LSPTLTL---PSSSF 60

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
           P HIC+AAEYKFPDPIPEFAVAETEKFRAHLLQKLSK+DIYGDS+Q+VVGICTEIFNTFM
Sbjct: 61  PTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTEIFNTFM 120

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSD INERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD T
Sbjct: 121 HTEYGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 169

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL
Match: A0A1S3BEL5 (uncharacterized protein LOC103489037 OS=Cucumis melo OX=3656 GN=LOC103489037 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 150/178 (84.27%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSL-LPLHKPNLPLSFFS-IPSTPFQHTRLLSPTLTLPFQPSSSF 60
           MAWT   +SPSF+LLP L    HKP+LPLSFFS  PS P +    LSPTLTLP   SSSF
Sbjct: 1   MAWT---TSPSFNLLPPLFFSFHKPSLPLSFFSNNPSAPPR----LSPTLTLP-SSSSSF 60

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
           P HIC+AAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDS+Q+VVGICTEIFNTFM
Sbjct: 61  PTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSLQQVVGICTEIFNTFM 120

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD T
Sbjct: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 170

[Close]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL
Match: A0A6J1DCY7 (protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC111019216 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 132/168 (78.57%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 9   SPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAAEY 68
           +P  HL PSL+ L    +PL FF  PS P   TR LSPTL LP+         IC AAEY
Sbjct: 8   APPLHLPPSLVTLKPSIIPLRFFPNPSAPLHRTR-LSPTLNLPYPLPG---ERICRAAEY 67

Query: 69  KFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGPGTL 128
           KFPDPIPEFAVAETEKFRAHLL KLSKKD+YGDSV EVVGICTEIFNTFMHTEYGGPGTL
Sbjct: 68  KFPDPIPEFAVAETEKFRAHLLNKLSKKDMYGDSVPEVVGICTEIFNTFMHTEYGGPGTL 127

Query: 129 LVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           LV+PFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWN+WTGDDGT
Sbjct: 128 LVVPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 171

[Close]

BLAST of Lsi04G005130.1 vs. NCBI nr
Match: XP_038891304.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 158/181 (87.29%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLP---SLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP--S 60
           M WT+SS   SFHLLP   SL PLHKPNLP SFFS PSTP  H RL   TLTLPFQP  S
Sbjct: 5   MVWTTSS---SFHLLPSSSSLFPLHKPNLPPSFFSNPSTPLHHKRLSLTTLTLPFQPSSS 64

Query: 61  SSFPNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFN 120
           SSFPNHIC AAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSV EVVGICTEIFN
Sbjct: 65  SSFPNHICRAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVHEVVGICTEIFN 124

Query: 121 TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDG 177
           TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWN WTGDD 
Sbjct: 125 TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNHWTGDDS 182

[Close]

BLAST of Lsi04G005130.1 vs. NCBI nr
Match: XP_023549642.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549649.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549656.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549666.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKPN P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPNSPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]

BLAST of Lsi04G005130.1 vs. NCBI nr
Match: XP_022997795.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_022997873.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 149/176 (84.66%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFA+AETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAIAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]

BLAST of Lsi04G005130.1 vs. NCBI nr
Match: KAG6601379.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.0 bits (772), Expect = 3.4e-78
Identity = 151/178 (84.83%), Postives = 156/178 (87.64%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP--SSSF 60
           MAWT   + P+FHLLPSL  LHKP  P  FFS PS+  QHTR LSPTL LPFQP  SSSF
Sbjct: 104 MAWT---TVPAFHLLPSLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSSF 163

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
            N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFM
Sbjct: 164 GNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFM 223

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 224 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 277

[Close]

BLAST of Lsi04G005130.1 vs. NCBI nr
Match: XP_022956596.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP_022956597.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >KAG7032158.1 Protein PLASTID REDOX INSENSITIVE 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78
Identity = 150/177 (84.75%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP-SSSFP 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQP SSSF 
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSFG 60

Query: 61  NHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMH 120
           N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMH
Sbjct: 61  NQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMH 120

Query: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173

[Close]

BLAST of Lsi04G005130.1 vs. TAIR 10
Match: AT1G10522.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]

BLAST of Lsi04G005130.1 vs. TAIR 10
Match: AT1G10522.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

The following BLAST results are available for this feature:

BLAST of Lsi04G005130.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIK0	1.7e-51	77.88	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
B6UFC7	4.4e-36	61.47	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ...	[more]
Q6H612	9.7e-36	48.41	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni...	[more]

BLAST of Lsi04G005130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAW7	2.5e-79	84.66	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita maxima OX=3...	[more]
A0A6J1GWZ9	4.8e-78	84.75	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita moschata OX...	[more]
A0A0A0KTS5	3.4e-76	84.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603340 PE=4 SV=1	[more]
A0A1S3BEL5	2.9e-75	84.27	uncharacterized protein LOC103489037 OS=Cucumis melo OX=3656 GN=LOC103489037 PE=...	[more]
A0A6J1DCY7	1.0e-67	78.57	protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Lsi04G005130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891304.1	3.9e-82	87.29	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida]	[more]
XP_023549642.1	1.1e-79	85.80	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. p...	[more]
XP_022997795.1	5.2e-79	84.66	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_0...	[more]
KAG6601379.1	3.4e-78	84.83	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_022956596.1	9.9e-78	84.75	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP...	[more]

BLAST of Lsi04G005130.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10522.1	1.2e-52	77.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10522.2	1.2e-52	77.88	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039349	Protein PLASTID REDOX INSENSITIVE 2	PANTHER	PTHR35987	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED	coord: 24..174
None	No IPR available	PANTHER	PTHR35987:SF2	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC	coord: 24..174

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G005130	Lsi04G005130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G005130.1.exon.1	Lsi04G005130.1.exon.1	exon
Lsi04G005130.1.exon.2	Lsi04G005130.1.exon.2	exon
Lsi04G005130.1.exon.3	Lsi04G005130.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G005130.1.five_prime_UTR.1	Lsi04G005130.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G005130.1.CDS.1	Lsi04G005130.1.CDS.1	CDS
Lsi04G005130.1.CDS.2	Lsi04G005130.1.CDS.2	CDS
Lsi04G005130.1.CDS.3	Lsi04G005130.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G005130.1.three_prime_UTR.1	Lsi04G005130.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G005130.1	Lsi04G005130.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression