Lsi04G005130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G005130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein PLASTID REDOX INSENSITIVE 2, chloroplastic-like
Locationchr04: 4766256 .. 4767575 (+)
RNA-Seq ExpressionLsi04G005130
SyntenyLsi04G005130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACACTGGTGGGTGCAAATAGATAATCCATCGATAAACCCTTCCTCTACGCTTTCGCTAAGCTAAACCCGTGCAGCAGATAAAGATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGTAAGTTTCCCCTTCTCTTCCCATCATTTCCAAATGTCTGAATTTTACATACGATTTCTTTTCTGTTCAGGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGGTATGAAATATGCTACCGTCGCTGTCACATTTTGATTTAACATAATAAATCTCTTTACTTATGTTATTCTCAACAACAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAACACAAGTCCTTCCTGCACCATAATTCATTTTGTTAATCTGATTTACCAAAGCGATTGTCCAGATATGAGTTCAATTTGTTCTTGAATGAACTATCAGAGATCTAGAGAGGATAACGATAGAATGATAGAACTTGGATGAAAGCAAACGGAAAGTCTTCATTTTCAACTGGATTGTAGCCGAAAACTTTAGTGTACTGCTAAAATATTAGATGCCTTTATGAGCAATATAAATTGTTTTAGCTGTACGGTAAGATGAGAGCTGTTATTTAAGTATATCTTGATTTTGAATTATGGATGTTAAACTTATCATTACAGGATGCATAATTTTTTTCGTATCGGAGGAGCCCGAAAATAATATTCCAAAGCTTTGGATCTGGTGTATCATAAGGGATTTGCCTCAACCGGATTGAATTTTCACTATTATTTGTATACATTACAGACGAAACAGAAGGACTTCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTTATGTACATATCTTATTATTTATAATTTATAATAATTATATACACTAATTGTTCGATTTTCTGCC

mRNA sequence

AAAACACTGGTGGGTGCAAATAGATAATCCATCGATAAACCCTTCCTCTACGCTTTCGCTAAGCTAAACCCGTGCAGCAGATAAAGATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAACACAAGTCCTTCCTGCACCATAATTCATTTTGTTAATCTGATTTACCAAAGCGATTGTCCAGATATGAGTTCAATTTGTTCTTGAATGAACTATCAGAGATCTAGAGAGGATAACGATAGAATGATAGAACTTGGATGAAAGCAAACGGAAAGTCTTCATTTTCAACTGGATTGTAGCCGAAAACTTTAGTGTACTGCTAAAATATTAGATGCCTTTATGAGCAATATAAATTGTTTTAGCTGTACGGTAAGATGAGAGCTGTTATTTAAGTATATCTTGATTTTGAATTATGGATGTTAAACTTATCATTACAGGATGCATAATTTTTTTCGTATCGGAGGAGCCCGAAAATAATATTCCAAAGCTTTGGATCTGGTGTATCATAAGGGATTTGCCTCAACCGGATTGAATTTTCACTATTATTTGTATACATTACAGACGAAACAGAAGGACTTCCATTTAAGTTGGGCCAGCCTTTTTCTGGGGTTTATGTACATATCTTATTATTTATAATTTATAATAATTATATACACTAATTGTTCGATTTTCTGCC

Coding sequence (CDS)

ATGGCATGGACTTCTTCTTCTTCTTCTCCTTCTTTCCATCTCCTCCCTTCTCTCCTTCCCCTCCATAAACCCAACCTTCCATTATCCTTCTTCTCCATTCCTTCAACTCCTTTCCAACACACACGCCTTCTCTCCCCCACTCTCACTCTTCCATTTCAACCCTCCTCCTCCTTCCCAAACCACATTTGCAGCGCCGCCGAATACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCTGAGACCGAGAAGTTCAGGGCTCATCTCCTTCAAAAGCTCTCTAAGAAAGATATTTACGGGGATTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTTAATACCTTTATGCACACCGAGTATGGCGGGCCTGGGACTTTGTTGGTTTTACCTTTCATAGACATGTCTGATACAATCAATGAACGAGGATTACCTGGAGGCCCTCAAGCTGCTCGTGCTGCAGTCAAATGGGCTCAGGATCATGTTGATAAAGACTGGAACCAGTGGACTGGTGATGATGGTACCTAA

Protein sequence

MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT
Homology
[Close]
BLAST of Lsi04G005130 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]
BLAST of Lsi04G005130 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.4e-36
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 0 

Query: 67  EYKFPDPIPEFAVAETEKFRAHLLQKL--SKKDIYGDSVQEVVGICTEIFNTFMHTEYGG 126
           +YKFPDPIPEFA  ET KFR H+  +L   K+D +GD V+E+V +CTEI  TF+  +Y G
Sbjct: 64  DYKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEIMGTFLENDYRG 123

Query: 127 PGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGD 174
           PGTLLV PF+DM   I ERGLPG PQAARAA+ WA+ +VDKDW  WTG+
Sbjct: 124 PGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNVDKDWKAWTGE 172

[Close]
BLAST of Lsi04G005130 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.7e-36
Identity = 76/157 (48.41%), Postives = 102/157 (64.97%), Query Frame = 0 

Query: 21  LHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAA--EYKFPDPIPEFA 80
           L+ P L LS  S PS+      +L    +   +P+        +AA  +YKFPDPIPEFA
Sbjct: 15  LNPPLLTLSASSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAKNAAYDDYKFPDPIPEFA 74

Query: 81  VAETEKFRAHLLQKLSKK--DIYGDSVQEVVGICTEIFNTFMHTEYGGPGTLLVLPFIDM 140
             ET KF+ H++ +L +K  D +G+ V+E+V +CTEI  TF+  +Y GPGTLLV PF+DM
Sbjct: 75  AQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLEHDYCGPGTLLVHPFLDM 134

Query: 141 SDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGD 174
              I ERGLPG PQAARAA+ WA+ ++DKDW  WTG+
Sbjct: 135 KGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGE 171

[Close]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match: A0A6J1KAW7 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492617 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 149/176 (84.66%), Postives = 155/176 (88.07%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFA+AETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAIAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match: A0A6J1GWZ9 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458286 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78
Identity = 150/177 (84.75%), Postives = 155/177 (87.57%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP-SSSFP 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQP SSSF 
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSFG 60

Query: 61  NHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMH 120
           N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMH
Sbjct: 61  NQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMH 120

Query: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173

[Close]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match: A0A0A0KTS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603340 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.4e-76
Identity = 150/178 (84.27%), Postives = 159/178 (89.33%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSL-LPLHKPNLPLSFFS-IPSTPFQHTRLLSPTLTLPFQPSSSF 60
           MAWT  ++SPSF+LLPSL  P HKP+LP SFFS  PSTP +    LSPTLTL   PSSSF
Sbjct: 1   MAWT--TTSPSFNLLPSLFFPFHKPSLPPSFFSNNPSTPLR----LSPTLTL---PSSSF 60

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
           P HIC+AAEYKFPDPIPEFAVAETEKFRAHLLQKLSK+DIYGDS+Q+VVGICTEIFNTFM
Sbjct: 61  PTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKRDIYGDSLQQVVGICTEIFNTFM 120

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSD INERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD T
Sbjct: 121 HTEYGGPGTLLVLPFIDMSDAINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 169

[Close]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match: A0A1S3BEL5 (uncharacterized protein LOC103489037 OS=Cucumis melo OX=3656 GN=LOC103489037 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.9e-75
Identity = 150/178 (84.27%), Postives = 157/178 (88.20%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSL-LPLHKPNLPLSFFS-IPSTPFQHTRLLSPTLTLPFQPSSSF 60
           MAWT   +SPSF+LLP L    HKP+LPLSFFS  PS P +    LSPTLTLP   SSSF
Sbjct: 1   MAWT---TSPSFNLLPPLFFSFHKPSLPLSFFSNNPSAPPR----LSPTLTLP-SSSSSF 60

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
           P HIC+AAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDS+Q+VVGICTEIFNTFM
Sbjct: 61  PTHICTAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSLQQVVGICTEIFNTFM 120

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD T
Sbjct: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDAT 170

[Close]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match: A0A6J1DCY7 (protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC111019216 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 132/168 (78.57%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 9   SPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPNHICSAAEY 68
           +P  HL PSL+ L    +PL FF  PS P   TR LSPTL LP+         IC AAEY
Sbjct: 8   APPLHLPPSLVTLKPSIIPLRFFPNPSAPLHRTR-LSPTLNLPYPLPG---ERICRAAEY 67

Query: 69  KFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGPGTL 128
           KFPDPIPEFAVAETEKFRAHLL KLSKKD+YGDSV EVVGICTEIFNTFMHTEYGGPGTL
Sbjct: 68  KFPDPIPEFAVAETEKFRAHLLNKLSKKDMYGDSVPEVVGICTEIFNTFMHTEYGGPGTL 127

Query: 129 LVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           LV+PFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWN+WTGDDGT
Sbjct: 128 LVVPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 171

[Close]
BLAST of Lsi04G005130 vs. NCBI nr
Match: XP_038891304.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 158/181 (87.29%), Postives = 159/181 (87.85%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLP---SLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP--S 60
           M WT+SS   SFHLLP   SL PLHKPNLP SFFS PSTP  H RL   TLTLPFQP  S
Sbjct: 5   MVWTTSS---SFHLLPSSSSLFPLHKPNLPPSFFSNPSTPLHHKRLSLTTLTLPFQPSSS 64

Query: 61  SSFPNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFN 120
           SSFPNHIC AAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSV EVVGICTEIFN
Sbjct: 65  SSFPNHICRAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVHEVVGICTEIFN 124

Query: 121 TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDG 177
           TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWN WTGDD 
Sbjct: 125 TFMHTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNHWTGDDS 182

[Close]
BLAST of Lsi04G005130 vs. NCBI nr
Match: XP_023549642.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549649.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549656.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549666.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKPN P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPNSPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]
BLAST of Lsi04G005130 vs. NCBI nr
Match: XP_022997795.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_022997873.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 5.2e-79
Identity = 149/176 (84.66%), Postives = 155/176 (88.07%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQPSSSFPN 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQPSSSF N
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSFGN 60

Query: 61  HICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHT 120
            IC AAEYKFPDPIPEFA+AETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMHT
Sbjct: 61  QICRAAEYKFPDPIPEFAIAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHT 120

Query: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 EYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]
BLAST of Lsi04G005130 vs. NCBI nr
Match: KAG6601379.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.0 bits (772), Expect = 3.4e-78
Identity = 151/178 (84.83%), Postives = 156/178 (87.64%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP--SSSF 60
           MAWT   + P+FHLLPSL  LHKP  P  FFS PS+  QHTR LSPTL LPFQP  SSSF
Sbjct: 104 MAWT---TVPAFHLLPSLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSSF 163

Query: 61  PNHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFM 120
            N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFM
Sbjct: 164 GNQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFM 223

Query: 121 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 224 HTEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 277

[Close]
BLAST of Lsi04G005130 vs. NCBI nr
Match: XP_022956596.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP_022956597.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >KAG7032158.1 Protein PLASTID REDOX INSENSITIVE 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78
Identity = 150/177 (84.75%), Postives = 155/177 (87.57%), Query Frame = 0 

Query: 1   MAWTSSSSSPSFHLLPSLLPLHKPNLPLSFFSIPSTPFQHTRLLSPTLTLPFQP-SSSFP 60
           MAWT   + P+FHLLP L  LHKP  P  FFS PS+  QHTR LSPTL LPFQP SSSF 
Sbjct: 1   MAWT---TVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTR-LSPTLRLPFQPSSSSFG 60

Query: 61  NHICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMH 120
           N IC AAEYKFPDPIPEFAVAETEKFRAHLL KLSKKDIYGDSVQEVVG+CTEIFNTFMH
Sbjct: 61  NQICRAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMH 120

Query: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDDGT 177
           TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 121 TEYGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173

[Close]
BLAST of Lsi04G005130 vs. TAIR 10
Match: AT1G10522.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]
BLAST of Lsi04G005130 vs. TAIR 10
Match: AT1G10522.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 88/113 (77.88%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 62  ICSAAEYKFPDPIPEFAVAETEKFRAHLLQKLSKKDIYGDSVQEVVGICTEIFNTFMHTE 121
           +C AAEYKFPDPIPEFA AETEKFR H+L KLSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 122 YGGPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNQWTGDD 175
           YGGPGTLLV+PFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW +WTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

The following BLAST results are available for this feature:
BLAST of Lsi04G005130 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XIK01.7e-5177.88Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
B6UFC74.4e-3661.47Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ... [more]
Q6H6129.7e-3648.41Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni... [more]
BLAST of Lsi04G005130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KAW72.5e-7984.66protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita maxima OX=3... [more]
A0A6J1GWZ94.8e-7884.75protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like OS=Cucurbita moschata OX... [more]
A0A0A0KTS53.4e-7684.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603340 PE=4 SV=1[more]
A0A1S3BEL52.9e-7584.27uncharacterized protein LOC103489037 OS=Cucumis melo OX=3656 GN=LOC103489037 PE=... [more]
A0A6J1DCY71.0e-6778.57protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Lsi04G005130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038891304.13.9e-8287.29protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida][more]
XP_023549642.11.1e-7985.80protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. p... [more]
XP_022997795.15.2e-7984.66protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_0... [more]
KAG6601379.13.4e-7884.83Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe... [more]
XP_022956596.19.9e-7884.75protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP... [more]
BLAST of Lsi04G005130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10522.11.2e-5277.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G10522.21.2e-5277.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039349Protein PLASTID REDOX INSENSITIVE 2PANTHERPTHR35987PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATEDcoord: 24..174
NoneNo IPR availablePANTHERPTHR35987:SF2PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTICcoord: 24..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005130.1Lsi04G005130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression