Lsi03G021280.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021280.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 32460184 .. 32460868 (-)
Sequence length	435
RNA-Seq Expression	Lsi03G021280.1
Synteny	Lsi03G021280.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATGAATGATTTAAGGATAAAATTCACTTGGATTTTAAAGGATTAAAAGGTGGTTTTTTTTCTTCTTATTTTCATCGATCATGAAGAATTGTTCAAGGGTGAGAACTATATCTAATATGAATGTCTGGACATTATTAAAATGAAAAATCTGTGGACTACGCAGAAAAAAGAAACAAGTATTAGAATTGAATGCTGCTTGTTCCCATGTTTAACCTCAACCTCTGTTTCTTTTCTTCCTTAGCCATTTTCTTCTTCACTGTCCCCGCCGCATCTCAGAAGTTCTACTACGCCGGATTTCTCGCCGCCACCAACTTAACCCCTACCGGATATCGCGAAGATCGAGGAGAACGGGCTGTTAAAGCTCACAGACGACACCAAATGGATACAGGGCCACGTGTTGTACGAATCCCCTGTTCGTTCGATTCAAAAACTCCTCCAACGGCAAAGCTTTTTCGTTCTCCACAACTTTTGTCTTCGCCATCGTCTCCGAATACCCTAACCTTGCCAGCCATGGGCTCGCCTTCACTATTGCGCCCTCCAAAAACCTCCATGGACTTCCCTCTCGGTATTTAGGCCTTCTCAATGAGACGAATGACGGAAACCCCTCAAACCATTTATTTGCAATCTGGAGTTCGAGGACATCGACGACAACCACGTTGGAATCAATCTCGATAGTATGA

mRNA sequence

ATGCCCATTTTCTTCTTCACTGTCCCCGCCGCATCTCAGAAGTTCTACTACGCCGGATTTCTCGCCGCCACCAACTTAACCCCTACCGGATATCGCGAAGATCGAGGAGAACGGGCTGTTAAAGCTCACAGACGACACCAAATGGATACAGGGCCACGTGTTGTACGAATCCCCTGTTCGTTCGATTCAAAAACTCCTCCAACGGCAAAGCTTTTTCGTTCTCCACAACTTTTGTCTTCGCCATCGTCTCCGAATACCCTAACCTTGCCAGCCATGGGCTCGCCTTCACTATTGCGCCCTCCAAAAACCTCCATGGACTTCCCTCTCGGCCTTCTCAATGAGACGAATGACGGAAACCCCTCAAACCATTTATTTGCAATCTGGAGTTCGAGGACATCGACGACAACCACGTTGGAATCAATCTCGATAGTATGA

Coding sequence (CDS)

ATGCCCATTTTCTTCTTCACTGTCCCCGCCGCATCTCAGAAGTTCTACTACGCCGGATTTCTCGCCGCCACCAACTTAACCCCTACCGGATATCGCGAAGATCGAGGAGAACGGGCTGTTAAAGCTCACAGACGACACCAAATGGATACAGGGCCACGTGTTGTACGAATCCCCTGTTCGTTCGATTCAAAAACTCCTCCAACGGCAAAGCTTTTTCGTTCTCCACAACTTTTGTCTTCGCCATCGTCTCCGAATACCCTAACCTTGCCAGCCATGGGCTCGCCTTCACTATTGCGCCCTCCAAAAACCTCCATGGACTTCCCTCTCGGCCTTCTCAATGAGACGAATGACGGAAACCCCTCAAACCATTTATTTGCAATCTGGAGTTCGAGGACATCGACGACAACCACGTTGGAATCAATCTCGATAGTATGA

Protein sequence

MPIFFFTVPAASQKFYYAGFLAATNLTPTGYREDRGERAVKAHRRHQMDTGPRVVRIPCSFDSKTPPTAKLFRSPQLLSSPSSPNTLTLPAMGSPSLLRPPKTSMDFPLGLLNETNDGNPSNHLFAIWSSRTSTTTTLESISIV

Homology

The following BLAST results are available for this feature:

BLAST of Lsi03G021280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021280.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021280.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G021280	Lsi03G021280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G021280.1.exon.3	Lsi03G021280.1.exon.3	exon
Lsi03G021280.1.exon.2	Lsi03G021280.1.exon.2	exon
Lsi03G021280.1.exon.1	Lsi03G021280.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G021280.1.CDS.3	Lsi03G021280.1.CDS.3	CDS
Lsi03G021280.1.CDS.2	Lsi03G021280.1.CDS.2	CDS
Lsi03G021280.1.CDS.1	Lsi03G021280.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G021280.1	Lsi03G021280.1-protein	polypeptide