Lsi03G020700.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G020700.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Suppressor protein SRP40-like isoform X2
Location	chr03: 32008776 .. 32010007 (-)
Sequence length	1040
RNA-Seq Expression	Lsi03G020700.1
Synteny	Lsi03G020700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCAATAAATGGATGTAATAAATGAGAAGGTTTAAACATGGAGGTAGATGAATCAGGTCAGAGTTACAAAACAGCTGCCACTTTTGCACAGTATCTCCAGCATCTGAAGAAGACAGATTTTCAAAAAAGTTCCTTCCCAAAAAAATAAAATTGTTAAAGAGTTCATCTTTCCACTTTTTCTGACTATTTGTATTCTAATCCAAGCAATTGTGCTCAGGCCAAGAAAATGGCACCCACTACCAAGGTGGACATCAAATGGAGGTCTCTCTCTCTCTCTTTCACTTTAAAATGTGAAGTGGGTTTGTTCTATCTATCTCTCTTTCTAAATTTTGATGCGGGTTTTGTATGGCAGTGGCAACAAGATGGAAGGTGGTGAAGTTTTGATAACAATGGAGTGCCTAAGAAGGAGATTACTAGCAGAGAGGCAAGCATCATTACTTGCCAAAGAAGAGGCAGAGCTCATGGGCAAAAGGGTATTACCAATGCCAAAACTCTCCTCATTTTTACCCTAATTTGAACTTGGTTCATTTTCCCTATTGTGTTCCTTTCAAGCATTTTATCGAACATGTTGCAGTCAACAGAATTAGAGAAGCAGATCACAAAGCAGATTCAAATGAAAACAAAAGCAGAAAAGAAGCTTCAATTACTGAAGAAAAAGCTCGAATCACTTAACCTTTCTTCCACGATGGTGAACTCAGAGGCTTCAATTTCGTCGGAAATTCTCGACGAAGATGAACCGAAAACCCTAATCGAAGTTCCGCCTCTCAGAAGAAACTCGAAGGCCATTGGTGAAATTTCTCATTCGGAAGAAGAGAATCGAAATGCTTGTGGTTCTACAAGCTCGAACTCCTCTGCTTCTGAAATTTGCTCCGACGAACCTTTGAAAACAAAGATCGGAAATTGTGGAAAGGAGTTCGATTCCGTCGACGATTCACTTGCAATTGTTGCCGTGAACTGGCCGGAAAAATCAGAAACCGGCGATGAGTTGAATCCGGCGATCAGTGAAAGGATCATTGAAGTTCTTAATGATCTGAAGCACGCTCGAGAGAGAATTCAGAGATCAATGAAGATTTGTGAGCTTAACATGATTAAAGTCGGCCCAGTTTGAACTCAAATGTGTGTGAGAGAGAGATTGGATTTGGAAATGGGCCTGATTGAAAAGCCCATCAGACCCAGCCCACTTAAGACTTACAAAATGGATATTATTTCAAAATACCATTTTCGTCCCTA

mRNA sequence

AGAGCAATAAATGGATGTAATAAATGAGAAGGTTTAAACATGGAGGTAGATGAATCAGGTCAGAGTTACAAAACAGCTGCCACTTTTGCACAGTATCTCCAGCATCTGAAGAAGACAGATTTTCAAAAAAGTTCCTTCCCAAAAAAATAAAATTGTTAAAGAGTTCATCTTTCCACTTTTTCTGACTATTTGTATTCTAATCCAAGCAATTGTGCTCAGGCCAAGAAAATGGCACCCACTACCAAGGTGGACATCAAATGGAGTGGCAACAAGATGGAAGGTGGTGAAGTTTTGATAACAATGGAGTGCCTAAGAAGGAGATTACTAGCAGAGAGGCAAGCATCATTACTTGCCAAAGAAGAGGCAGAGCTCATGGGCAAAAGGTCAACAGAATTAGAGAAGCAGATCACAAAGCAGATTCAAATGAAAACAAAAGCAGAAAAGAAGCTTCAATTACTGAAGAAAAAGCTCGAATCACTTAACCTTTCTTCCACGATGGTGAACTCAGAGGCTTCAATTTCGTCGGAAATTCTCGACGAAGATGAACCGAAAACCCTAATCGAAGTTCCGCCTCTCAGAAGAAACTCGAAGGCCATTGGTGAAATTTCTCATTCGGAAGAAGAGAATCGAAATGCTTGTGGTTCTACAAGCTCGAACTCCTCTGCTTCTGAAATTTGCTCCGACGAACCTTTGAAAACAAAGATCGGAAATTGTGGAAAGGAGTTCGATTCCGTCGACGATTCACTTGCAATTGTTGCCGTGAACTGGCCGGAAAAATCAGAAACCGGCGATGAGTTGAATCCGGCGATCAGTGAAAGGATCATTGAAGTTCTTAATGATCTGAAGCACGCTCGAGAGAGAATTCAGAGATCAATGAAGATTTGTGAGCTTAACATGATTAAAGTCGGCCCAGTTTGAACTCAAATGTGTGTGAGAGAGAGATTGGATTTGGAAATGGGCCTGATTGAAAAGCCCATCAGACCCAGCCCACTTAAGACTTACAAAATGGATATTATTTCAAAATACCATTTTCGTCCCTA

Coding sequence (CDS)

ATGGCACCCACTACCAAGGTGGACATCAAATGGAGTGGCAACAAGATGGAAGGTGGTGAAGTTTTGATAACAATGGAGTGCCTAAGAAGGAGATTACTAGCAGAGAGGCAAGCATCATTACTTGCCAAAGAAGAGGCAGAGCTCATGGGCAAAAGGTCAACAGAATTAGAGAAGCAGATCACAAAGCAGATTCAAATGAAAACAAAAGCAGAAAAGAAGCTTCAATTACTGAAGAAAAAGCTCGAATCACTTAACCTTTCTTCCACGATGGTGAACTCAGAGGCTTCAATTTCGTCGGAAATTCTCGACGAAGATGAACCGAAAACCCTAATCGAAGTTCCGCCTCTCAGAAGAAACTCGAAGGCCATTGGTGAAATTTCTCATTCGGAAGAAGAGAATCGAAATGCTTGTGGTTCTACAAGCTCGAACTCCTCTGCTTCTGAAATTTGCTCCGACGAACCTTTGAAAACAAAGATCGGAAATTGTGGAAAGGAGTTCGATTCCGTCGACGATTCACTTGCAATTGTTGCCGTGAACTGGCCGGAAAAATCAGAAACCGGCGATGAGTTGAATCCGGCGATCAGTGAAAGGATCATTGAAGTTCTTAATGATCTGAAGCACGCTCGAGAGAGAATTCAGAGATCAATGAAGATTTGTGAGCTTAACATGATTAAAGTCGGCCCAGTTTGA

Protein sequence

MAPTTKVDIKWSGNKMEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQITKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNSKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNWPEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV

Homology

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BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL
Match: A0A1S3B6U8 (uncharacterized protein LOC103486426 OS=Cucumis melo OX=3656 GN=LOC103486426 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.0e-88
Identity = 191/230 (83.04%), Postives = 206/230 (89.57%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKM-EGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQ 60
           M+P TK+DIKWSGNKM EGGEV  TMECLRRRLLAER ASLLAKEEAE+M KRS+ELEKQ
Sbjct: 67  MSPYTKMDIKWSGNKMVEGGEVSKTMECLRRRLLAERHASLLAKEEAEVMDKRSSELEKQ 126

Query: 61  ITKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRN 120
           ITKQIQMK +AEKKLQLLKKKLESLNLSSTMVNSEASISSEI +EDEPKTLIEVPPL RN
Sbjct: 127 ITKQIQMKARAEKKLQLLKKKLESLNLSSTMVNSEASISSEICNEDEPKTLIEVPPLPRN 186

Query: 121 SKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVN 180
           SK I EISHSEEENRNA GST+SN SAS+I SDEP KTK G+CGKEFDSVDDSLAIVAV+
Sbjct: 187 SKGINEISHSEEENRNARGSTASNISASKIYSDEPSKTKTGSCGKEFDSVDDSLAIVAVD 246

Query: 181 WPEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
            PEKSETG++L P ISERIIEVLNDLK AR RIQ SM+ICE +MI+V PV
Sbjct: 247 SPEKSETGEQLKPVISERIIEVLNDLKRARGRIQSSMEICE-HMIEVSPV 295

[Close]

BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL
Match: A0A0A0LDB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736620 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.8e-84
Identity = 183/230 (79.57%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKM-EGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQ 60
           MAP TK+DIKWSGNKM EGGEV  TMECLRRRLLAER ASLLAK+EAELM KRS+ELEKQ
Sbjct: 1   MAPNTKMDIKWSGNKMVEGGEVSKTMECLRRRLLAERHASLLAKDEAELMDKRSSELEKQ 60

Query: 61  ITKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRN 120
           ITKQIQMK +AEKKLQLLKKKLESLNLSSTMVNSEAS+SSEI +E+EPKT IEV PL  +
Sbjct: 61  ITKQIQMKARAEKKLQLLKKKLESLNLSSTMVNSEASVSSEICNENEPKTPIEVQPLPSH 120

Query: 121 SKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVN 180
           SK I EI HSEEENRNA GSTSSN SAS+I SD+P KTKIGNCGKE DSVDDSLAIVAV+
Sbjct: 121 SKGISEIFHSEEENRNARGSTSSNISASKIHSDKPSKTKIGNCGKEIDSVDDSLAIVAVD 180

Query: 181 WPEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
            P KSET ++L P ISERIIEVLNDLK ARERIQ SMK+C+ +MI+V P+
Sbjct: 181 SPAKSETFEQLKPVISERIIEVLNDLKRARERIQSSMKLCD-HMIEVSPI 229

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BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL
Match: A0A5A7TKN7 (Suppressor protein SRP40-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002050 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.7e-81
Identity = 178/214 (83.18%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 16  MEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQITKQIQMKTKAEKKLQ 75
           +EGGEV  TMECLRRRLLAER ASLLAKEEAE+M KRS+ELEKQITKQIQMK +AEKKLQ
Sbjct: 2   VEGGEVSKTMECLRRRLLAERHASLLAKEEAEVMDKRSSELEKQITKQIQMKARAEKKLQ 61

Query: 76  LLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNSKAIGEISHSEEENRN 135
           LLKKKLESLNLSSTMVNSEASISSEI +EDEPKTLIEVPPL RNSK I EISHSEEENRN
Sbjct: 62  LLKKKLESLNLSSTMVNSEASISSEICNEDEPKTLIEVPPLPRNSKGINEISHSEEENRN 121

Query: 136 ACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNWPEKSETGDELNPAIS 195
           A GST+SN SAS+I SDEP KTK G+CGKEFDSVDDSLAIVAV+ PEKSETG++L P IS
Sbjct: 122 ARGSTASNISASKIYSDEPSKTKTGSCGKEFDSVDDSLAIVAVDSPEKSETGEQLKPVIS 181

Query: 196 ERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           ERIIEVLNDLK AR RIQ SM+ICE +MI+V PV
Sbjct: 182 ERIIEVLNDLKRARGRIQSSMEICE-HMIEVSPV 214

[Close]

BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL
Match: A0A6J1L305 (uncharacterized protein LOC111498645 OS=Cucurbita maxima OX=3661 GN=LOC111498645 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.3e-80
Identity = 178/229 (77.73%), Postives = 196/229 (85.59%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKMEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 60
           MA +TKVDIKWSGN MEG EVL TMECLRRRLLAERQASLLAKEEAELMGKRSTELEK+I
Sbjct: 1   MAHSTKVDIKWSGNTMEGSEVLKTMECLRRRLLAERQASLLAKEEAELMGKRSTELEKKI 60

Query: 61  TKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNS 120
           T+Q QM+TKAEKKLQLLKKKLESL+LS TM+NSE SISSEI DEDEPKTL     L  NS
Sbjct: 61  TEQNQMRTKAEKKLQLLKKKLESLDLSFTMLNSEPSISSEICDEDEPKTLTAATSLPINS 120

Query: 121 KAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNW 180
           + IGEISHS+EEN NA G+TSS+SS SEI S+E  K KI N G+EF+SVDDSLA VAVN 
Sbjct: 121 QTIGEISHSDEENPNARGTTSSSSSGSEIFSNESSKEKIENSGEEFNSVDDSLAFVAVNS 180

Query: 181 PEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           PE++ETG E+   ISER+IEVLNDLK ARERIQRSMKICELNM+KV PV
Sbjct: 181 PEETETG-EMKLVISERVIEVLNDLKQARERIQRSMKICELNMMKVSPV 228

[Close]

BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL
Match: A0A6J1CXG5 (uncharacterized protein LOC111015099 OS=Momordica charantia OX=3673 GN=LOC111015099 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.5e-71
Identity = 164/229 (71.62%), Postives = 181/229 (79.04%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKMEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 60
           MAP  K DIKWSGNKMEG EVL TMECLRRRLLAERQAS LAKE+AELM KRS ELEKQI
Sbjct: 1   MAPNAKEDIKWSGNKMEGCEVLKTMECLRRRLLAERQASFLAKEKAELMEKRSKELEKQI 60

Query: 61  TKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNS 120
           T+QI M+TKAEKKL+LL+KKLESLNL ST V SE S+SSEI D ++PKTLI    L  N+
Sbjct: 61  TEQIHMRTKAEKKLKLLRKKLESLNLPSTTVKSEPSVSSEICDGEQPKTLITASSLPSNA 120

Query: 121 KAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNW 180
           +A GEISHSEE N NA G  + +SSASEIC D+  K KI N G EF S  DS A+VAVN 
Sbjct: 121 QATGEISHSEEANPNARGCAAPSSSASEICCDKVSKAKIENGGDEFVSTGDSPAVVAVNS 180

Query: 181 PEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           PE S+TG E  PAI+E IIEVLNDLKHARERIQ SM+I ELNMIKV PV
Sbjct: 181 PENSKTG-EWKPAITEGIIEVLNDLKHARERIQSSMEISELNMIKVSPV 228

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BLAST of Lsi03G020700.1 vs. NCBI nr
Match: XP_038906280.1 (uncharacterized protein LOC120092141 [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 5.8e-94
Identity = 200/229 (87.34%), Postives = 206/229 (89.96%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKMEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 60
           MAP    +IKWSGNKMEGGEV  TMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI
Sbjct: 15  MAP----NIKWSGNKMEGGEVSKTMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 74

Query: 61  TKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNS 120
           TKQIQMKTKAEKKLQLLKKKL SLNLS+TMVNSEAS+SSEI DEDEPKTLIEVP L  NS
Sbjct: 75  TKQIQMKTKAEKKLQLLKKKLGSLNLSTTMVNSEASVSSEICDEDEPKTLIEVPSLLSNS 134

Query: 121 KAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNW 180
           KAIGEISH EEENRNA GSTSSNSSASEICSDEP KTKIG C KEFDSVDDSLAIVAVN 
Sbjct: 135 KAIGEISHLEEENRNARGSTSSNSSASEICSDEPSKTKIGKCEKEFDSVDDSLAIVAVNS 194

Query: 181 PEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           P KSETGDEL P ISERIIEVLNDLKHARE I+ SMKICE+NMI+V PV
Sbjct: 195 PGKSETGDELKPLISERIIEVLNDLKHARETIRSSMKICEVNMIEVSPV 239

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BLAST of Lsi03G020700.1 vs. NCBI nr
Match: XP_008442604.2 (PREDICTED: uncharacterized protein LOC103486426 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 2.1e-88
Identity = 191/230 (83.04%), Postives = 206/230 (89.57%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKM-EGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQ 60
           M+P TK+DIKWSGNKM EGGEV  TMECLRRRLLAER ASLLAKEEAE+M KRS+ELEKQ
Sbjct: 67  MSPYTKMDIKWSGNKMVEGGEVSKTMECLRRRLLAERHASLLAKEEAEVMDKRSSELEKQ 126

Query: 61  ITKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRN 120
           ITKQIQMK +AEKKLQLLKKKLESLNLSSTMVNSEASISSEI +EDEPKTLIEVPPL RN
Sbjct: 127 ITKQIQMKARAEKKLQLLKKKLESLNLSSTMVNSEASISSEICNEDEPKTLIEVPPLPRN 186

Query: 121 SKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVN 180
           SK I EISHSEEENRNA GST+SN SAS+I SDEP KTK G+CGKEFDSVDDSLAIVAV+
Sbjct: 187 SKGINEISHSEEENRNARGSTASNISASKIYSDEPSKTKTGSCGKEFDSVDDSLAIVAVD 246

Query: 181 WPEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
            PEKSETG++L P ISERIIEVLNDLK AR RIQ SM+ICE +MI+V PV
Sbjct: 247 SPEKSETGEQLKPVISERIIEVLNDLKRARGRIQSSMEICE-HMIEVSPV 295

[Close]

BLAST of Lsi03G020700.1 vs. NCBI nr
Match: XP_011651920.1 (uncharacterized protein LOC105434957 [Cucumis sativus] >KGN58914.1 hypothetical protein Csa_001220 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 183/230 (79.57%), Postives = 201/230 (87.39%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKM-EGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQ 60
           MAP TK+DIKWSGNKM EGGEV  TMECLRRRLLAER ASLLAK+EAELM KRS+ELEKQ
Sbjct: 1   MAPNTKMDIKWSGNKMVEGGEVSKTMECLRRRLLAERHASLLAKDEAELMDKRSSELEKQ 60

Query: 61  ITKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRN 120
           ITKQIQMK +AEKKLQLLKKKLESLNLSSTMVNSEAS+SSEI +E+EPKT IEV PL  +
Sbjct: 61  ITKQIQMKARAEKKLQLLKKKLESLNLSSTMVNSEASVSSEICNENEPKTPIEVQPLPSH 120

Query: 121 SKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVN 180
           SK I EI HSEEENRNA GSTSSN SAS+I SD+P KTKIGNCGKE DSVDDSLAIVAV+
Sbjct: 121 SKGISEIFHSEEENRNARGSTSSNISASKIHSDKPSKTKIGNCGKEIDSVDDSLAIVAVD 180

Query: 181 WPEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
            P KSET ++L P ISERIIEVLNDLK ARERIQ SMK+C+ +MI+V P+
Sbjct: 181 SPAKSETFEQLKPVISERIIEVLNDLKRARERIQSSMKLCD-HMIEVSPI 229

[Close]

BLAST of Lsi03G020700.1 vs. NCBI nr
Match: XP_023538931.1 (uncharacterized protein LOC111799712 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-81
Identity = 179/229 (78.17%), Postives = 197/229 (86.03%), Query Frame = 0


Query: 1   MAPTTKVDIKWSGNKMEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 60
           MA +TK+DIKWSGN MEG EVL TMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI
Sbjct: 1   MAHSTKMDIKWSGNTMEGSEVLKTMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 60

Query: 61  TKQIQMKTKAEKKLQLLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNS 120
           T+Q QM+TKAEKKLQLLKKKLESLNLS TM+NSE SISSEI D+DEPKTL     L  NS
Sbjct: 61  TEQNQMRTKAEKKLQLLKKKLESLNLSFTMLNSEPSISSEICDDDEPKTLTTATSLPSNS 120

Query: 121 KAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNW 180
           + IGEISHS+EEN NA GSTSS+SS SEICS+E  K KI N G EF+SV+DSLA+VAVN 
Sbjct: 121 QTIGEISHSDEENPNARGSTSSSSSGSEICSNESSKEKIENSGDEFNSVNDSLALVAVNS 180

Query: 181 PEKSETGDELNPAISERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           PE++ETG E+   ISER+IEVLNDLK ARERIQRSMKICELNM+KV PV
Sbjct: 181 PEEAETG-EMKLVISERVIEVLNDLKQARERIQRSMKICELNMMKVSPV 228

[Close]

BLAST of Lsi03G020700.1 vs. NCBI nr
Match: KAA0044053.1 (suppressor protein SRP40-like isoform X2 [Cucumis melo var. makuwa] >TYK25082.1 suppressor protein SRP40-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 5.6e-81
Identity = 178/214 (83.18%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 16  MEGGEVLITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQITKQIQMKTKAEKKLQ 75
           +EGGEV  TMECLRRRLLAER ASLLAKEEAE+M KRS+ELEKQITKQIQMK +AEKKLQ
Sbjct: 2   VEGGEVSKTMECLRRRLLAERHASLLAKEEAEVMDKRSSELEKQITKQIQMKARAEKKLQ 61

Query: 76  LLKKKLESLNLSSTMVNSEASISSEILDEDEPKTLIEVPPLRRNSKAIGEISHSEEENRN 135
           LLKKKLESLNLSSTMVNSEASISSEI +EDEPKTLIEVPPL RNSK I EISHSEEENRN
Sbjct: 62  LLKKKLESLNLSSTMVNSEASISSEICNEDEPKTLIEVPPLPRNSKGINEISHSEEENRN 121

Query: 136 ACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDSLAIVAVNWPEKSETGDELNPAIS 195
           A GST+SN SAS+I SDEP KTK G+CGKEFDSVDDSLAIVAV+ PEKSETG++L P IS
Sbjct: 122 ARGSTASNISASKIYSDEPSKTKTGSCGKEFDSVDDSLAIVAVDSPEKSETGEQLKPVIS 181

Query: 196 ERIIEVLNDLKHARERIQRSMKICELNMIKVGPV 230
           ERIIEVLNDLK AR RIQ SM+ICE +MI+V PV
Sbjct: 182 ERIIEVLNDLKRARGRIQSSMEICE-HMIEVSPV 214

[Close]

BLAST of Lsi03G020700.1 vs. TAIR 10
Match: AT2G37300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-09
Identity = 61/180 (33.89%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 5   TKVDIKWSGNKMEGGEV----LITMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQI 64
           TK    ++  KME  E       T+ECLR RLLAERQ S  AKEEAEL+ ++  ELE+ +
Sbjct: 69  TKCRTNFASKKMEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNL 128

Query: 65  TKQIQMKTKAEKKLQLLKKKLE-------SLNLSSTMVNSEASISSEILDEDEPKTLIE- 124
            ++I+++ KAEK+L+LL KKLE       S   SS+ V+  +S+ +    E+E +T    
Sbjct: 129 KEEIRLREKAEKRLKLLMKKLEFIKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSG 188

Query: 125 VPPLRRNSKAIGEISHSEEENRNACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDS 173
                +   A   ++ +EE + ++     S+  AS + S    K +    G EF    D+
Sbjct: 189 AVDEGKTDHATENVASTEEADSSSKLKDVSSGEASVVASTSSHKEE-SQFGNEFSWYSDA 247

[Close]

BLAST of Lsi03G020700.1 vs. TAIR 10
Match: AT2G37300.1 (unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 19; Plants - 25; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 55/157 (35.03%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 24  TMECLRRRLLAERQASLLAKEEAELMGKRSTELEKQITKQIQMKTKAEKKLQLLKKKLE- 83
           T+ECLR RLLAERQ S  AKEEAEL+ ++  ELE+ + ++I+++ KAEK+L+LL KKLE 
Sbjct: 13  TVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKLLMKKLEF 72

Query: 84  ------SLNLSSTMVNSEASISSEILDEDEPKTLIE-VPPLRRNSKAIGEISHSEEENRN 143
                 S   SS+ V+  +S+ +    E+E +T         +   A   ++ +EE + +
Sbjct: 73  IKGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATENVASTEEADSS 132

Query: 144 ACGSTSSNSSASEICSDEPLKTKIGNCGKEFDSVDDS 173
           +     S+  AS + S    K +    G EF    D+
Sbjct: 133 SKLKDVSSGEASVVASTSSHKEE-SQFGNEFSWYSDA 168

The following BLAST results are available for this feature:

BLAST of Lsi03G020700.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G020700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6U8	1.0e-88	83.04	uncharacterized protein LOC103486426 OS=Cucumis melo OX=3656 GN=LOC103486426 PE=...	[more]
A0A0A0LDB5	5.8e-84	79.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736620 PE=4 SV=1	[more]
A0A5A7TKN7	2.7e-81	83.18	Suppressor protein SRP40-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1L305	2.3e-80	77.73	uncharacterized protein LOC111498645 OS=Cucurbita maxima OX=3661 GN=LOC111498645...	[more]
A0A6J1CXG5	2.5e-71	71.62	uncharacterized protein LOC111015099 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Lsi03G020700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906280.1	5.8e-94	87.34	uncharacterized protein LOC120092141 [Benincasa hispida]	[more]
XP_008442604.2	2.1e-88	83.04	PREDICTED: uncharacterized protein LOC103486426 [Cucumis melo]	[more]
XP_011651920.1	1.2e-83	79.57	uncharacterized protein LOC105434957 [Cucumis sativus] >KGN58914.1 hypothetical ...	[more]
XP_023538931.1	1.1e-81	78.17	uncharacterized protein LOC111799712 [Cucurbita pepo subsp. pepo]	[more]
KAA0044053.1	5.6e-81	83.18	suppressor protein SRP40-like isoform X2 [Cucumis melo var. makuwa] >TYK25082.1 ...	[more]

BLAST of Lsi03G020700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37300.2	3.6e-09	33.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G37300.1	1.0e-08	35.03	unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..149
None	No IPR available	PANTHER	PTHR33701	TRANSMEMBRANE PROTEIN	coord: 1..150
None	No IPR available	PANTHER	PTHR33701	TRANSMEMBRANE PROTEIN	coord: 133..217
None	No IPR available	PANTHER	PTHR33701:SF2	TRANSMEMBRANE PROTEIN	coord: 1..150 coord: 133..217

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G020700	Lsi03G020700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020700.1.exon.3	Lsi03G020700.1.exon.3	exon
Lsi03G020700.1.exon.2	Lsi03G020700.1.exon.2	exon
Lsi03G020700.1.exon.1	Lsi03G020700.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020700.1.three_prime_UTR.1	Lsi03G020700.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020700.1.CDS.3	Lsi03G020700.1.CDS.3	CDS
Lsi03G020700.1.CDS.2	Lsi03G020700.1.CDS.2	CDS
Lsi03G020700.1.CDS.1	Lsi03G020700.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G020700.1.five_prime_UTR.1	Lsi03G020700.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G020700.1	Lsi03G020700.1-protein	polypeptide