Lsi02G022800.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAATTTCGACCGAACCAAAGAAAAAAAAGGTAGACCGACAAATATGAGCCAACCACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGGTAAATTTTGGTGATTTTAAAAATGTGTATTAACATATTGATTGAAAAGAGATTAAAAATGATTGAATTAGTGTTTTTTAGATTGACTAAAGAATTTTTTTTTTTTTTAAAAAAAAATGTTTTTTTATTTATGTTCTTTCGATAAAATCTAGTAAAATATATTTTAAAAATTAATATTTTGAATGGTTCAAATATTTTTTTTTCTTTTTTAAAATGACTTATTTTGAAAATTAAACTATTGAAAGTTAATCCAAACCCAGCCTTGGGGGTTTTGTGGTTTGCAGTTTTATACTCTTGGATTAAGAGTTGTGATTTATATATTTGAAATATGTCAAAAAAAAAAAAAAAAATAGTCTAGTATATATTCAGCTCTTTTTATTTATTTATTTATTTTATTTTTTAATACTAATAAATAGGGTGTGAAATTCAAACTTTTGAAGGTAGATAATATGCAATTCATTACTGTTGAGCGCTAACTTTTCTTTAATGATCTTTTTCTATCGCCAAGTTGCATAGGTCGAAATTTATGCTTTTTTTATCCATATTTAAGCTCACTTTTGAGTTAGTGGTTGATTCAAGAATTTTTTGAATTTCTAGAAATAAAATATACTACAAATAAAACAATTAAATTCTAAATATAAGCCTATATAACACCATTTAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAACTTAAAACATTAATCATGAGGTAGTAAATTTTGTGATGTTTCACTTATATCGAATTAGCGTGTGAAAAACAAATATGAATAGAAGTCAATTAGTATGAAAACGTACGTGGAGAGAAGTTTAAAATTGTGTATTAAATTTTCTAGATCTATAATTTTAGTATAAATAACTAACTTACTTTTCTCTCAAAATTATACAACAGTAACAAATACTCAATATCATCTTTCTCTCTTATTTTCTCTTATTAGCTCTTTGAGGAGTAATTTGATCAAAAGAAGAGTGTTTTGATTGTGGAACTTTAAGCTCAACATTTTAGCGTAAAGTAGTTTGAGCTACACAATATTTTAGTTGGAATACGTTGTTGTATCCTAAAGGAGACATCACAGAGAATATCTACTGCACCAATGGTTAATACTAAGAGATACAATACACACTGCAAAGGACTTAAATCTCCTTAAAATAGAAGTCTATCAGGGTCTATCAATGATAGAAATGATAGAAGTCTACCAGTGATAGATGCTAATAGAAGTTTATCAACGTCTATCATTGTTTTCTTTTGCTATTTTTTTATAAATGGTTTGACATTTTTTCAATTTGTAAAAAAATTTCACTAAATTATTCATAAAAGAAAAAGAAAAACAAACTTGGGTGTTACCCACCTATTTTTTGGGCAGCCCATTTAACTATCTTTTTTATAATTGAGTTTTTTTAATTTTTTATTTTACTACGTACAGACAAGAAGACATGAAATTAGGTGCAATCTAAACTACACTTAAAAGAATTACCTTTCATACAAAAATAAAATTATCTTATAAACAATGATTAACATGCCTCACTCTTTTATAATAGTAAAAAATATATATAAAAACAATTCATTTTTTTAAATTGCACAAAGATAGTGCATCCCATCTTATTAAAATCACATAACAAATATAGATTGTTCATCATCATCAATTCCACGTGTCAATTAACAATGCTGCCAAATATATAATTTTGATATCCACGTGTACAAACCTCCAACCATTCTCTAAAAGCTCCTCATTTTCCTCTCAACACTTGTAAAACCACCTCAAATTTATCTTACAATCCCATGCGTATATATTTTATATACAAACTCATTAAATTAATTAATTAATTAAATTTCGACCGAACCAAAGAAAAAAAAGGTAGACCGACAAATATGAGCCAACCACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGGTAAATTTTGGTGATTTTAAAAATGTGTATTAACATATTGATTGAAAAGAGATTAAAAATGATTGAATTAGTGTTTTTTAGATTGACTAAAGAATTTTTTTTTTTTTTAAAAAAAAATGTTTTTTTATTTATGTTCTTTCGATAAAATCTAGTAAAATATATTTTAAAAATTAATATTTTGAATGGTTCAAATATTTTTTTTTCTTTTTTAAAATGACTTATTTTGAAAATTAAACTATTGAAAGTTAATCCAAACCCAGCCTTGGGGGTTTTGTGGTTTGCAGTTTTATACTCTTGGATTAAGAGTTGTGATTTATATATTTGAAATATGTCAAAAAAAAAAAAAAAAATAGTCTAGTATATATTCAGCTCTTTTTATTTATTTATTTATTTTATTTTTTAATACTAATAAATAGGGTGTGAAATTCAAACTTTTGAAGGTAGATAATATGCAATTCATTACTGTTGAGCGCTAACTTTTCTTTAATGATCTTTTTCTATCGCCAAGTTGCATAGGTCGAAATTTATGCTTTTTTTATCCATATTTAAGCTCACTTTTGAGTTAGTGGTTGATTCAAGAATTTTTTGAATTTCTAGAAATAAAATATACTACAAATAAAACAATTAAATTCTAAATATAAGCCTATATAACACCATTTAAAAAAAAAAAAAAAAAAAAGGCAAATATTATAAAGCCTATCGATCTCGGAGTGATTGTTGTCTATCATTTATGTTAGGTTATCCATACTATTTCTTACTTTTTTTAAAAAATGCATTTAAATTCTTATTGAAACACACACATATAACCTTAAAATTGCCTTTAAAAAAAGTAGCTAATAAATAAGAGATGATATGAAATTTCATCTCAAGATCGATTGGCACTCTTCTGGACCGGATACTTGTTGGGCTTCTATATCTTATGAGAGAACATAAGATTTTATTTCAAAACTAAGTGGCAATCAGACTATTAATTTTTTTTTTTTGGAGGTAGGTTTGTCAACAATAAAGCGGAATATTATAGACAATAGCGTTATGGTAAATTTAATTTTAAAAAATGGGTTGAATTTGGAAGTGTAGTTATTTCTACTTTTTGTAGTGGAGATTGTGGAACCTAGAACCAGAAATTTGAGCAAATAGTAAAAAGAAATGAAATTTATCGATTGATTATTAATTATAGGTTGTAGGACAATTTGTCCAACCAAATGTTCCAATGACATCTCCCGGAGCAACACTCGACAATGATTCAATCACCATTGGGGAAGCTTTAGAAGCAAGTGCAGTCAGTGCCGGAGACAAGCCGATCGACCAAAGCGACGCCGCCGCAATCCAAGCAGCCGAGGTAAGGGCCACCGGGCAGAACGAGATAATCCCTGGTGGCATAGGGGCCGAGGCACAGTCGGCTGCCACCCTCAACACTCGAGCCATGCGGGACCAGGACAAGACAACGCTTGGCGACATCCTAACCGTAAGATGTCTTCACATCAAAATTATATAAAAGTTTCTCACTTATTTTTAAATTCTTTTTTTTGTTTGATGTCTTCACTATCGAACTATGTGATCCTTGATAGGATGCAACGCAGAAATTGCCAGGAGATAAGATGGTGACAAAGGAAGATGCAGAAAGGGTAATAAGTGCCGAGATAAGGAACAACCCGGCAATGGCGACCACGCCGGGAGGTGTGGCAGCATCGGTGGCAGCCGCAGCAAGGGTTAACCAACAGGGATAG AAATTTCGACCGAACCAAAGAAAAAAAAGGTAGACCGACAAATATGAGCCAACCACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGGTTGTAGGACAATTTGTCCAACCAAATGTTCCAATGACATCTCCCGGAGCAACACTCGACAATGATTCAATCACCATTGGGGAAGCTTTAGAAGCAAGTGCAGTCAGTGCCGGAGACAAGCCGATCGACCAAAGCGACGCCGCCGCAATCCAAGCAGCCGAGGTAAGGGCCACCGGGCAGAACGAGATAATCCCTGGTGGCATAGGGGCCGAGGCACAGTCGGCTGCCACCCTCAACACTCGAGCCATGCGGGACCAGGACAAGACAACGCTTGGCGACATCCTAACCGATGCAACGCAGAAATTGCCAGGAGATAAGATGGTGACAAAGGAAGATGCAGAAAGGGTAATAAGTGCCGAGATAAGGAACAACCCGGCAATGGCGACCACGCCGGGAGGTGTGGCAGCATCGGTGGCAGCCGCAGCAAGGGTTAACCAACAGGGATAG ATGAGCCAACCACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGCCTCAAAGGCCCGCCGGGGATGACCAGGATCCGATCAAATACGGCGACGTTTTCAACGTTTCCGGTGACTTGGCCTCCAAGCCCATTGCCCCTCGTGATGCTGCCACCATGCAGGCCGCCGAGAATATGATCCTTGGCCAGACTCCTCGCGGTGGCCCCGCCGCTGTTATGCAGTCCGCTGCCAACGTCAACGAACGTGCTGGCCTTGTCGGTCACTCTGATGTGACCGATGTTGCTCGAGATGAAGGTGTTACTGTGACTGAAACCGTCGTCGACGGTCAGCGGTTTGTTGTTGAGTCGGTTGGAGGACAGGTTGTAGGACAATTTGTCCAACCAAATGTTCCAATGACATCTCCCGGAGCAACACTCGACAATGATTCAATCACCATTGGGGAAGCTTTAGAAGCAAGTGCAGTCAGTGCCGGAGACAAGCCGATCGACCAAAGCGACGCCGCCGCAATCCAAGCAGCCGAGGTAAGGGCCACCGGGCAGAACGAGATAATCCCTGGTGGCATAGGGGCCGAGGCACAGTCGGCTGCCACCCTCAACACTCGAGCCATGCGGGACCAGGACAAGACAACGCTTGGCGACATCCTAACCGATGCAACGCAGAAATTGCCAGGAGATAAGATGGTGACAAAGGAAGATGCAGAAAGGGTAATAAGTGCCGAGATAAGGAACAACCCGGCAATGGCGACCACGCCGGGAGGTGTGGCAGCATCGGTGGCAGCCGCAGCAAGGGTTAACCAACAGGGATAG MSQPQPQRPAGDDQDPIKYGDVFNVSGDLASKPIAPRDAATMQAAENMILGQTPRGGPAAVMQSAANVNERAGLVGHSDVTDVARDEGVTVTETVVDGQRFVVESVGGQPQRPAGDDQDPIKYGDVFNVSGDLASKPIAPRDAATMQAAENMILGQTPRGGPAAVMQSAANVNERAGLVGHSDVTDVARDEGVTVTETVVDGQRFVVESVGGQVVGQFVQPNVPMTSPGATLDNDSITIGEALEASAVSAGDKPIDQSDAAAIQAAEVRATGQNEIIPGGIGAEAQSAATLNTRAMRDQDKTTLGDILTDATQKLPGDKMVTKEDAERVISAEIRNNPAMATTPGGVAASVAAAARVNQQG Homology
BLAST of Lsi02G022800.1 vs. ExPASy Swiss-Prot
Match: P09444 (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 2.7e-80 Identity = 162/257 (63.04%), Postives = 203/257 (78.99%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy Swiss-Prot
Match: Q9LJ97 (Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 3.1e-68 Identity = 149/258 (57.75%), Postives = 180/258 (69.77%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy Swiss-Prot
Match: Q9LJ95 (Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 PE=2 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 5.2e-60 Identity = 138/254 (54.33%), Postives = 170/254 (66.93%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy Swiss-Prot
Match: Q8GWT7 (Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27980 PE=2 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.2e-35 Identity = 91/157 (57.96%), Postives = 112/157 (71.34%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy Swiss-Prot
Match: Q9SA57 (Late embryogenesis abundant protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g03120 PE=3 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 4.4e-35 Identity = 85/160 (53.12%), Postives = 117/160 (73.12%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy TrEMBL
Match: A0A1S3BSB8 (late embryogenesis abundant protein D-34 OS=Cucumis melo OX=3656 GN=LOC103492655 PE=3 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 2.4e-116 Identity = 228/252 (90.48%), Postives = 244/252 (96.83%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy TrEMBL
Match: A0A6J1GPG9 (late embryogenesis abundant protein D-34-like OS=Cucurbita moschata OX=3662 GN=LOC111456338 PE=3 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 3.1e-116 Identity = 227/252 (90.08%), Postives = 241/252 (95.63%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy TrEMBL
Match: A0A0A0K4Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G388330 PE=3 SV=1) HSP 1 Score: 416.4 bits (1069), Expect = 1.2e-112 Identity = 223/254 (87.80%), Postives = 244/254 (96.06%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy TrEMBL
Match: A0A6J1JXR2 (late embryogenesis abundant protein D-34-like OS=Cucurbita maxima OX=3661 GN=LOC111488455 PE=3 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 1.6e-112 Identity = 221/252 (87.70%), Postives = 237/252 (94.05%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. ExPASy TrEMBL
Match: A0A5D3DRQ0 (Late embryogenesis abundant protein D-34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001500 PE=3 SV=1) HSP 1 Score: 407.5 bits (1046), Expect = 5.7e-110 Identity = 220/252 (87.30%), Postives = 237/252 (94.05%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. NCBI nr
Match: XP_038899811.1 (late embryogenesis abundant protein D-34-like [Benincasa hispida]) HSP 1 Score: 438.7 bits (1127), Expect = 4.8e-119 Identity = 233/253 (92.09%), Postives = 246/253 (97.23%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. NCBI nr
Match: XP_008451333.1 (PREDICTED: late embryogenesis abundant protein D-34 [Cucumis melo]) HSP 1 Score: 428.7 bits (1101), Expect = 4.9e-116 Identity = 228/252 (90.48%), Postives = 244/252 (96.83%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. NCBI nr
Match: XP_022953931.1 (late embryogenesis abundant protein D-34-like [Cucurbita moschata]) HSP 1 Score: 428.3 bits (1100), Expect = 6.5e-116 Identity = 227/252 (90.08%), Postives = 241/252 (95.63%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. NCBI nr
Match: KAG6575918.1 (hypothetical protein SDJN03_26557, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 426.0 bits (1094), Expect = 3.2e-115 Identity = 225/252 (89.29%), Postives = 239/252 (94.84%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. NCBI nr
Match: XP_023548951.1 (late embryogenesis abundant protein D-34-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 424.5 bits (1090), Expect = 9.3e-115 Identity = 224/252 (88.89%), Postives = 239/252 (94.84%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. TAIR 10
Match: AT3G22490.1 (Seed maturation protein ) HSP 1 Score: 260.4 bits (664), Expect = 2.2e-69 Identity = 149/258 (57.75%), Postives = 180/258 (69.77%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. TAIR 10
Match: AT3G22500.1 (Seed maturation protein ) HSP 1 Score: 233.0 bits (593), Expect = 3.7e-61 Identity = 138/254 (54.33%), Postives = 170/254 (66.93%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. TAIR 10
Match: AT5G27980.1 (Seed maturation protein ) HSP 1 Score: 152.1 bits (383), Expect = 8.3e-37 Identity = 91/157 (57.96%), Postives = 112/157 (71.34%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. TAIR 10
Match: AT1G03120.1 (responsive to abscisic acid 28 ) HSP 1 Score: 150.2 bits (378), Expect = 3.2e-36 Identity = 85/160 (53.12%), Postives = 117/160 (73.12%), Query Frame = 0
BLAST of Lsi02G022800.1 vs. TAIR 10
Match: AT5G53260.1 (Seed maturation protein ) HSP 1 Score: 98.6 bits (244), Expect = 1.1e-20 Identity = 65/168 (38.69%), Postives = 97/168 (57.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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