Lsi01G009550.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G009550.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein RER1
Locationchr01: 7761687 .. 7762493 (+)
Sequence length624
RNA-Seq ExpressionLsi01G009550.1
SyntenyLsi01G009550.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAGAAGAACGGCCAGTTGGTCAACCCTACAATGACAAATGGCAGAAGAGAGAATTATAGAGAGAAACATCGGAATTAGGAAGGGAAAAGTTCAAAGGAAATCTTGAGTATAGAAATTGCGCGACGACACCTGCTGATACTCGTGGTTCCTAATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGGTGCGTCCAAGTTTCCGATTGCTTACATTTTTCCCCCTCCCATTTTTTATTTGAGCCATTGCGGTGTCTTTCCATTGAATACATTCTGATATATATGTGAATCATGCGATCAGGAATTGGTAGTGCAATTATGAACTGTCGAGGTTTGCTTAAGCTTTAGGATATGAGTAATTGTTGGATTAGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

mRNA sequence

GTAAGAAGAACGGCCAGTTGGTCAACCCTACAATGACAAATGGCAGAAGAGAGAATTATAGAGAGAAACATCGGAATTAGGAAGGGAAAAGTTCAAAGGAAATCTTGAGTATAGAAATTGCGCGACGACACCTGCTGATACTCGTGGTTCCTAATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

Coding sequence (CDS)

ATGGAAAGTGTAGCGGCTGGCGTTGGTCTTGGCGCCGCAGAAGATGTTTCTTCTACCACTCTCTTTTCACGGTGGAGCCATGCCGTTTCCCGGCGGTATCAGCATCTCCTCGATAAGTGTACCCCATACATCTTCTACCGTTGGACGGCCTGTTTTTTCATCACCTTTATCTATGTCCTTCGGGTTTACCTCATCGAAGGATTCTACATCGTCTCTTACGGTCTCGGAATTTACATCCTCAATCTTCTAATCGGCTTTCTCTCCCCTCAAGTGGATCCTGAGATCCTGGATCTCCATCAAGGCCCTGCGCTTCCTCTCAGGGAATCCGACGAGTTCCGTCCTTTCGTTCGTAGGCTTCCGGAGTTCAAGTTCTGCGTCACGAGCTTGAATGTTAATAATTGGGGTAGGAATTCTTTTGACTTTTCACACATAGGACGTGGATTTGATTATGATTGGTGCTGGAATCTCTAG

Protein sequence

MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKFCVTSLNVNNWGRNSFDFSHIGRGFDYDWCWNL
Homology
BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0

Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   + +H   R YQH LDK TP+  YRW     +  IY LRVY I+GFYI++YGLG
Sbjct: 10  SVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE   +  GP+LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKF 117

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-26
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 0

Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   +  H   R YQ+ LDK TP+   RW        IY LRVY I GFYI+SYGLG
Sbjct: 10  SMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE L++  G  LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKF 116

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q5ZHM5 (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-25
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0

Query: 33  YQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLLIGFLSPQVD 92
           YQ  LDK TPY   RW     ++FIY++RVYL++G+YIV+Y LGIY LNL I FLSP+VD
Sbjct: 29  YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVD 88

Query: 93  PEIL-DLHQGPALPLRESDEFRPFVRRLPEFKF 125
           P ++ D   GP+LP R+++EFRPF+RRLPEFKF
Sbjct: 89  PSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121

BLAST of Lsi01G009550.1 vs. ExPASy Swiss-Prot
Match: Q9CQU3 (Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-25
Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 24  RWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNLL 83
           R+   + + YQ  LDK TPY   RW     ++F+Y++RVYL++G+YIV+Y LGIY LNL 
Sbjct: 20  RFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLF 79

Query: 84  IGFLSPQVDPEIL-DLHQGPALPLRESDEFRPFVRRLPEFKF 125
           I FLSP+VDP ++ D   GP+LP ++++EFRPF+RRLPEFKF
Sbjct: 80  IAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1GCX4 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG AEDV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1IRU9 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.0e-57
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGL AAE VSSTTLF+RWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1KTW6 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.5e-56
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVG GAAEDVSSTTLF+RWSHA S RYQHLLD+C+PYIFYRW ACFFI  IYVL
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1HHE0 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.5e-56
Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVG GAAEDVSSTTLF+RWSHA S RYQHLLD+C+PYIFYRW ACFFI  IYVL
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. ExPASy TrEMBL
Match: A0A6J1BTU8 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 111/126 (88.10%), Postives = 116/126 (92.06%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MESVAAGVGLGAAED SSTT+ SRWSHAVSRRYQHLLD+CTP+IFYRW ACF I  IYVL
Sbjct: 1   MESVAAGVGLGAAEDFSSTTIVSRWSHAVSRRYQHLLDRCTPFIFYRWIACFAIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQ--GPALPLRESDEFRPFVRR 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEI DLH+  GPALP+ ESDEFRPFVRR
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEIPDLHEGTGPALPISESDEFRPFVRR 120

Query: 121 LPEFKF 125
           LPEFKF
Sbjct: 121 LPEFKF 126

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_022949760.1 (protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucurbita moschata] >KAG6604161.1 Protein RER1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 8.5e-57
Identity = 114/124 (91.94%), Postives = 116/124 (93.55%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG AEDV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_023544323.1 (protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 115/124 (92.74%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGV LGAAEDV STTLFSRWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESDAAGVRLGAAEDVYSTTLFSRWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_022977598.1 (protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurbita maxima])

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-56
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGL AAE VSSTTLF+RWSHAVSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: XP_038880923.1 (protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 115/124 (92.74%), Postives = 119/124 (95.97%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           ME VAAGVGLGAAEDVSSTTLFSR SHAVSRRYQHLLD+CTPYIFYRW ACFFI  IYVL
Sbjct: 1   MEGVAAGVGLGAAEDVSSTTLFSRLSHAVSRRYQHLLDRCTPYIFYRWIACFFIASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDL++GPALP+RESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLNEGPALPVRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. NCBI nr
Match: KAG7034324.1 (Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-56
Identity = 113/124 (91.13%), Postives = 115/124 (92.74%), Query Frame = 0

Query: 1   MESVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVL 60
           MES AAGVGLG A DV STTLFSRWSH VSRRYQHLLD+CTPYIFYRW ACFF+  IYVL
Sbjct: 1   MESEAAGVGLGGAGDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLP 120
           RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLH GPALPLRESDEFRPFVRRLP
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHDGPALPLRESDEFRPFVRRLP 120

Query: 121 EFKF 125
           EFKF
Sbjct: 121 EFKF 124

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0

Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 0

Query: 3   SVAAGVGLGAAEDVSSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRV 62
           + A    L +++  S     +R  HA S+R QHLLDK  P++ YRW AC  +  IY++RV
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  YLIEGFYIVSYGLGIYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEF 122
           Y +EGFYI++Y +GIY+LNL+I FLSPQ DPE   L  G +LP R SDE+RPFVRRLPEF
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLSPQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPEF 137

Query: 123 KF 125
           KF
Sbjct: 138 KF 138

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   + +H   R YQH LDK TP+  YRW     +  IY LRVY I+GFYI++YGLG
Sbjct: 10  SVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE   +  GP+LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKF 117

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-27
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 0

Query: 17  SSTTLFSRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLG 76
           S  T   +  H   R YQ+ LDK TP+   RW        IY LRVY I GFYI+SYGLG
Sbjct: 10  SMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLG 69

Query: 77  IYILNLLIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           IY+LNLLIGFLSP VDPE L++  G  LP R SDEF+PF+RRLPEFKF
Sbjct: 70  IYLLNLLIGFLSPLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKF 116

BLAST of Lsi01G009550.1 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 23  SRWSHAVSRRYQHLLDKCTPYIFYRWTACFFITFIYVLRVYLIEGFYIVSYGLGIYILNL 82
           ++W    S+ +Q+ LD+  P I  RW        IY+ RVY + G++++SYGL  YILNL
Sbjct: 20  AKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNL 79

Query: 83  LIGFLSPQVDPEILDLHQGPALPLRESDEFRPFVRRLPEFKF 125
           LIGFLSP+VDPE L+     +LP+ ESDE++PFVRRLPEFKF
Sbjct: 80  LIGFLSPKVDPE-LEALDPDSLPVDESDEYKPFVRRLPEFKF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZWI72.4e-3054.10Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1[more]
O486701.6e-2960.19Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1[more]
O486713.6e-2659.26Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2[more]
Q5ZHM55.2e-2560.22Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1[more]
Q9CQU36.8e-2553.92Protein RER1 OS=Mus musculus OX=10090 GN=Rer1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1GCX44.1e-5791.94Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1[more]
A0A6J1IRU97.0e-5791.94Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1[more]
A0A6J1KTW63.5e-5691.13Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1[more]
A0A6J1HHE03.5e-5691.13Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1[more]
A0A6J1BTU81.6e-5388.10Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_022949760.18.5e-5791.94protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucu... [more]
XP_023544323.11.1e-5692.74protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-li... [more]
XP_022977598.11.5e-5691.94protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurb... [more]
XP_038880923.12.5e-5692.74protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benin... [more]
KAG7034324.15.5e-5691.13Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT2G23310.11.7e-3154.10Rer1 family protein [more]
AT2G23310.21.7e-3154.10Rer1 family protein [more]
AT4G39220.11.1e-3060.19Rer1 family protein [more]
AT2G21600.12.6e-2759.26endoplasmatic reticulum retrieval protein 1B [more]
AT2G18240.11.7e-2351.96Rer1 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004932Retrieval of early ER protein Rer1PFAMPF03248Rer1coord: 25..129
e-value: 6.9E-37
score: 126.8
IPR004932Retrieval of early ER protein Rer1PANTHERPTHR10743PROTEIN RER1coord: 13..126
NoneNo IPR availablePANTHERPTHR10743:SF11PROTEIN RER1Ccoord: 13..126

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G009550Lsi01G009550gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G009550.1.exon.1Lsi01G009550.1.exon.1exon
Lsi01G009550.1.exon.2Lsi01G009550.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G009550.1.five_prime_UTR.1Lsi01G009550.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G009550.1.CDS.1Lsi01G009550.1.CDS.1CDS
Lsi01G009550.1.CDS.2Lsi01G009550.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G009550.1Lsi01G009550.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process GO:0006621 protein retention in ER lumen
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030173 integral component of Golgi membrane