Lsi01G007380.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGTAGTGCCCTCTTCTTTGATATAGGTTAGCAGTTACTCTTTAGTTTTAACTATCTAATAAATGATATAGTTGTTTTAACTATCCTAAAGAAGTCACATGTTATGCATCACTTCTAGTACAAGAAAATAACACCTGTGGTAATACTAATACAGTACTTTGCATACAGGGTTTAGCTGGATTTTGTTTTGCTATACTACCTGCTGATGGAGATATCGGAATACTGGGACGTAAGCTCACAATTTCTCCTCAAATATAGATTGCTAATATATGATGTGTGCTATATGCATAATAAGTTGTTCATCTAATGAAAATGGTAATTTTGTACGTTGTCTCGTGCAGAAAATTACATGACTGGATACCAGATGGTATTCGATAGGGATAATTTGAAGTTGGGTTGGTCACGTGCAAATTGTAAGATTTCCAACTCCTAGTACTTGTCATGAATTTGCAGCCTCTTAGCAGATGCTCACATCTTGTGCATGATAGACCTAAAGAAATTTTTTTAACCGTCTTAACCACCATTTTTGTTCTGGCTCCGTTTCGTGTGGGTTGGTTATTTGTATTGTCCATTGTATACTTTCTCATTTGTTAAATGAAAGTATGGCTTTTCCATTGTATTGTAAACTCAATTCTTGAACATATATAGAGTTCCCTTTATCATTGTGAAGTTCCATTCTTATTTCTACCATGTCCATGTCAAAGGTCAAGATCTCAGTAACGAAAAGAAAATGCCTCTTGCTCCTGCAAAAGAGACGCCGCCAAACCCATTACCAGCCAATGAGCAGCAGAGCACTCCAGGGGGGCACGCGGTGGCTCCTGCCGTAGCTGGAAGGGCCCCCTCTAAACCATCAGCTGCTGTCCCTTGCTTCATCCCATCAAGCTTTTATTCGATCAGATTGCCGCACCTGCTTCTTCTGGTACTCTACCTTGTTTGTTCTTGTGTGTGATGTAGATTCTGAGCTTACCTAAGTTTTACATGTAAATGAAGACCGTCTCTTTACATCTTCCCCCACCGCCCGCCCGCCCCCCCCC ATGAGTTGTTTTAACTATCCTAAAGAAGTCACATGTTATGCATCACTTCTAGTACAAGAAAATAACACCTGTGGTAATACTAATACAGTACTTTGCATACAGGGTTTAGCTGGATTTTGTTTTGCTATACTACCTGCTGATGGAGATATCGGAATACTGGGACAAAATTACATGACTGGATACCAGATGGTATTCGATAGGGATAATTTGAAGTTGGGTTGGTCACGTCAAGATCTCAGTAACGAAAAGAAAATGCCTCTTGCTCCTGCAAAAGAGACGCCGCCAAACCCATTACCAGCCAATGAGCAGCAGAGCACTCCAGGGGGGCACGCGGTGGCTCCTGCCGTAGCTGGAAGGGCCCCCTCTAAACCATCAGCTGCTGTCCCTTGCTTCATCCCATCAAGCTTTTATTCGATCAGATTGCCGCACCTGCTTCTTCTGGTACTCTACCTTGTTTGTTCTTGTGTGTGATGTAGATTCTGAGCTTACCTAAGTTTTACATGTAAATGAAGACCGTCTCTTTACATCTTCCCCCACCGCCCGCCCGCCCCCCCCC ATGAGTTGTTTTAACTATCCTAAAGAAGTCACATGTTATGCATCACTTCTAGTACAAGAAAATAACACCTGTGGTAATACTAATACAGTACTTTGCATACAGGGTTTAGCTGGATTTTGTTTTGCTATACTACCTGCTGATGGAGATATCGGAATACTGGGACAAAATTACATGACTGGATACCAGATGGTATTCGATAGGGATAATTTGAAGTTGGGTTGGTCACGTCAAGATCTCAGTAACGAAAAGAAAATGCCTCTTGCTCCTGCAAAAGAGACGCCGCCAAACCCATTACCAGCCAATGAGCAGCAGAGCACTCCAGGGGGGCACGCGGTGGCTCCTGCCGTAGCTGGAAGGGCCCCCTCTAAACCATCAGCTGCTGTCCCTTGCTTCATCCCATCAAGCTTTTATTCGATCAGATTGCCGCACCTGCTTCTTCTGGTACTCTACCTTGTTTGTTCTTGTGTGTGA MSCFNYPKEVTCYASLLVQENNTCGNTNTVLCIQGLAGFCFAILPADGDIGILGQNYMTGYQMVFDRDNLKLGWSRQDLSNEKKMPLAPAKETPPNPLPANEQQSTPGGHAVAPAVAGRAPSKPSAAVPCFIPSSFYSIRLPHLLLLVLYLVCSCV Homology
BLAST of Lsi01G007380.1 vs. ExPASy Swiss-Prot
Match: Q9LX20 (Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g10080 PE=2 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.6e-19 Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy Swiss-Prot
Match: Q8VYV9 (Aspartyl protease family protein 1 OS=Arabidopsis thaliana OX=3702 GN=APF1 PE=2 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 6.0e-05 Identity = 34/105 (32.38%), Postives = 51/105 (48.57%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy TrEMBL
Match: A0A6J1IU36 (aspartic proteinase-like protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478432 PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 9.5e-54 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy TrEMBL
Match: A0A6J1IL58 (aspartic proteinase-like protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478432 PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 9.5e-54 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy TrEMBL
Match: A0A6J1BVH2 (aspartic proteinase-like protein 1 OS=Momordica charantia OX=3673 GN=LOC111005724 PE=3 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53 Identity = 111/126 (88.10%), Postives = 115/126 (91.27%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy TrEMBL
Match: A0A6J1GFS3 (aspartic proteinase-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453783 PE=3 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53 Identity = 109/126 (86.51%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. ExPASy TrEMBL
Match: A0A6J1GFU0 (aspartic proteinase-like protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453783 PE=3 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 2.1e-53 Identity = 109/126 (86.51%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. NCBI nr
Match: XP_038882808.1 (aspartic proteinase-like protein 1 isoform X2 [Benincasa hispida]) HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54 Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. NCBI nr
Match: XP_038882807.1 (aspartic proteinase-like protein 1 isoform X1 [Benincasa hispida]) HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54 Identity = 115/126 (91.27%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. NCBI nr
Match: XP_022978453.1 (aspartic proteinase-like protein 1 isoform X1 [Cucurbita maxima] >XP_022978454.1 aspartic proteinase-like protein 1 isoform X1 [Cucurbita maxima]) HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. NCBI nr
Match: XP_022978457.1 (aspartic proteinase-like protein 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. NCBI nr
Match: KAG6604016.1 (Aspartic proteinase-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53 Identity = 110/126 (87.30%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. TAIR 10
Match: AT5G10080.1 (Eukaryotic aspartyl protease family protein ) HSP 1 Score: 95.5 bits (236), Expect = 4.0e-20 Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. TAIR 10
Match: AT3G51330.1 (Eukaryotic aspartyl protease family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06 Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. TAIR 10
Match: AT4G35880.1 (Eukaryotic aspartyl protease family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06 Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. TAIR 10
Match: AT2G17760.1 (Eukaryotic aspartyl protease family protein ) HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06 Identity = 34/105 (32.38%), Postives = 51/105 (48.57%), Query Frame = 0
BLAST of Lsi01G007380.1 vs. TAIR 10
Match: AT3G51350.1 (Eukaryotic aspartyl protease family protein ) HSP 1 Score: 47.8 bits (112), Expect = 9.5e-06 Identity = 28/86 (32.56%), Postives = 45/86 (52.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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