Lsi01G002840.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G002840.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 2522134 .. 2524521 (-)
Sequence length617
RNA-Seq ExpressionLsi01G002840.1
SyntenyLsi01G002840.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGTGAATTTCTTTCAATTAAAAAGATGTTTCAGAGGGGGCTTAAATTGATTTAAACTAAGTAATATAGGTTATTCTATTGAATGTTTTCCTTTTGAATCAGGACCCAAGATATGGAAAAACCTCAAAAAGAAGAAGAGTAAGTGAATTTCTTTCAATTAAAGACATGTTTCAGACCAGCTTAAGTTGATTTAAACTAAGTAATATATGCTATTCTATTGAATGTTTTCCTTTTGAATCAGGACTCAAAATATGGAAAAATCTCAAAAAGAAGAAAAGTAAGTAGATTTCTTTCAATTAGAGGCATATTTCAAACCGGCTTAAATTGATTTAAATTAAGTAATATATGTTATTCTATTTAATGTTTTCCTTTTGAATTAGGACCCAAGATATGGAAAAACCTCAAGAAGAAGAAGAGTAAGTGAATTTCTTTCAATTAATGGCACGTTTCAAATAGACTTGAATTGATTTAAACTAAGTAATATATGCTATTCTATCAAATAGTTTCCTTTTGAATCAAGACCCAAGATATGAAAAAATCTCAAAAAGAAGAAGAGTAAGTGAATTTCTTTCGAATAATGGCACGTTTCAAACTGGCTTAAATTGATTTAAACTAAGTAACATATGCTATTCTATTGAATGTTTTCTTTTGTGTCAGGATTCAATATATGGAAAAACCTCAAAAAGAAGAAGAGTAAGTGAATTTTTTTCAATTAAAGACATGTTTCAAACCGGTTTAAATTGATTTAAATTAAGTAATAGATGCTATTTTATTAATTTTTTCCTTTTGAATCAGGATCCAAAATATGGAAAAATCTCAAGAAGAAGAAAAGTAAGTGAATTTCTTTTCATTAAAAGCACATTTCAAAGAGTTCAAATTGATTTTAATTAAATAATATATGTTATTATATTGAATGTTTTTTTTTTTTTGGAATTAGGATCGAAGATATGACAAATTCTGAAATAAAGAAATTCGGCGAGAGCTGCGCCTTTGGCATCTTTCTTACCCTTCTTTTTATGTGTGGTCTACTTGGATTATCGAATCGCACGAAAATAACTGTTCTTAGTTTTGAGGTATATATATATGTGGACATTTTTCAAATATAGAAAAGTGAGTCAAACTATTTACAAATATAGAAAAATTTTATCGATTTTATCGCTTTCTATCGCTCAAATGATAGAATTTATTTGTTTGAGCGATAGAAAGCGATAGAATTCTATCACCGATAGAAAGTGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTCTATGTTCATAGTAATATATATATATATATATATATATATATATTATTTGCTATTCTAATATTGTATCAATATCAATATCAATCTCATTTGAACTGAATGTTTTATTTATCCATCTACTATAGCTTGTTTGCAAAACCACAAATGCCCATAAATTACAACAGGCCTTTGAAAATATTGATACATCATCATCCCAAAATAAATCATCAGGTTTTGATTTCCATTTTAATTATTCTGTCTTTTCATATCTTATAACAACATTATCTACATTTATTAATTAATTACTTTTTTACATTTATCAATTTTCTCCATTATTTAGGCATTGCAACCTATTTGCTCCAACCTTCTACACAGAATTTATATTTCTCCGCAAGAACATCAGTAAGTTAATGTTATTTAATTATTTCTTAATCATTATTATTATTATTTAAATTTTGGTGTTGTTAGTCACATTTGAATTCTTCGTGTAGATAAAGAAAGCTTTATCAAAGAAGTGGTATGTCTATTATGAAAATTTAGCTACCCAAGCAACTTGTGAATTTTTCCAAATGAATTTAAAGGGTAGTGCAAACAATACCCTCCGAGATGATCAGGGACTTGAAAGCAATATGCAATATATCGTGGTAAGTATATAATTTTCTCTAAATTTTTTTAACAATGCATGAATATATTAATTATTTAAAATTTATTGATTCCAAACAGGTAAAGTCATTAGTTGCAGTAGAAGGAGAGATTTATAACATTCCAAATATCAAGAGGTTCGAAGATGTCATTAGATCTTTGCGTGCTATCACATTCATTTCTTATAAACAATTATTGGTTAGTAGACTACGATCAAAATTGATCATTTATTTTACTTTTTTGGCTTTCTGTATATATATAATTTTTTATTTTTCAAATTATATATATATATATATATATATATTAATTGTTGTAAATGTTTGCAGGTTGGAGATCTATTTTGGAGTCACCCACTCAATAAAATTACAGAGATTCCATCATTAGATTTAATTGTTTACCCTAACTCGAACTACAACTGTATCCAACAATCTTGACTACCAATTGATGGCCACAAGTCAAAGTCAACAAGCAAGTTTAATAATGTCAACTCAAT

mRNA sequence

ATGAGACCCAAGATATGGAAAAACCTCAAAAAGAAGAAGAGTAAGACTCAAAATATGGAAAAATCTCAAAAAGAAGAAAAGACCCAAGATATGGAAAAACCTCAAGAAGAAGAAGAGATCCAAAATATGGAAAAATCTCAAGAAGAAGAAAAGATCGAAGATATGACAAATTCTGAAATAAAGAAATTCGGCGAGAGCTGCGCCTTTGGCATCTTTCTTACCCTTCTTTTTATGCATTGCAACCTATTTGCTCCAACCTTCTACACAGAATTTATATTTCTCCGCAAGAACATCAATAAAGAAAGCTTTATCAAAGAAGTGGGTAGTGCAAACAATACCCTCCGAGATGATCAGGGACTTGAAAGCAATATGCAATATATCGTGGTAAAGTCATTAGTTGCAGTAGAAGGAGAGATTTATAACATTCCAAATATCAAGAGGTTCGAAGATGTTGGAGATCTATTTTGGAGTCACCCACTCAATAAAATTACAGAGATTCCATCATTAGATTTAATTGTTTACCCTAACTCGAACTACAACTGTATCCAACAATCTTGACTACCAATTGATGGCCACAAGTCAAAGTCAACAAGCAAGTTTAATAATGTCAACTCAAT

Coding sequence (CDS)

ATGAGACCCAAGATATGGAAAAACCTCAAAAAGAAGAAGAGTAAGACTCAAAATATGGAAAAATCTCAAAAAGAAGAAAAGACCCAAGATATGGAAAAACCTCAAGAAGAAGAAGAGATCCAAAATATGGAAAAATCTCAAGAAGAAGAAAAGATCGAAGATATGACAAATTCTGAAATAAAGAAATTCGGCGAGAGCTGCGCCTTTGGCATCTTTCTTACCCTTCTTTTTATGCATTGCAACCTATTTGCTCCAACCTTCTACACAGAATTTATATTTCTCCGCAAGAACATCAATAAAGAAAGCTTTATCAAAGAAGTGGGTAGTGCAAACAATACCCTCCGAGATGATCAGGGACTTGAAAGCAATATGCAATATATCGTGGTAAAGTCATTAGTTGCAGTAGAAGGAGAGATTTATAACATTCCAAATATCAAGAGGTTCGAAGATGTTGGAGATCTATTTTGGAGTCACCCACTCAATAAAATTACAGAGATTCCATCATTAGATTTAATTGTTTACCCTAACTCGAACTACAACTGTATCCAACAATCTTGA

Protein sequence

MRPKIWKNLKKKKSKTQNMEKSQKEEKTQDMEKPQEEEEIQNMEKSQEEEKIEDMTNSEIKKFGESCAFGIFLTLLFMHCNLFAPTFYTEFIFLRKNINKESFIKEVGSANNTLRDDQGLESNMQYIVVKSLVAVEGEIYNIPNIKRFEDVGDLFWSHPLNKITEIPSLDLIVYPNSNYNCIQQS
Homology
The following BLAST results are available for this feature:
BLAST of Lsi01G002840.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G002840.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G002840.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi01G002840.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..54

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G002840Lsi01G002840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002840.1.exon.11Lsi01G002840.1.exon.11exon
Lsi01G002840.1.exon.10Lsi01G002840.1.exon.10exon
Lsi01G002840.1.exon.9Lsi01G002840.1.exon.9exon
Lsi01G002840.1.exon.8Lsi01G002840.1.exon.8exon
Lsi01G002840.1.exon.7Lsi01G002840.1.exon.7exon
Lsi01G002840.1.exon.6Lsi01G002840.1.exon.6exon
Lsi01G002840.1.exon.5Lsi01G002840.1.exon.5exon
Lsi01G002840.1.exon.4Lsi01G002840.1.exon.4exon
Lsi01G002840.1.exon.3Lsi01G002840.1.exon.3exon
Lsi01G002840.1.exon.2Lsi01G002840.1.exon.2exon
Lsi01G002840.1.exon.1Lsi01G002840.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002840.1.three_prime_UTR.1Lsi01G002840.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002840.1.CDS.11Lsi01G002840.1.CDS.11CDS
Lsi01G002840.1.CDS.10Lsi01G002840.1.CDS.10CDS
Lsi01G002840.1.CDS.9Lsi01G002840.1.CDS.9CDS
Lsi01G002840.1.CDS.8Lsi01G002840.1.CDS.8CDS
Lsi01G002840.1.CDS.7Lsi01G002840.1.CDS.7CDS
Lsi01G002840.1.CDS.6Lsi01G002840.1.CDS.6CDS
Lsi01G002840.1.CDS.5Lsi01G002840.1.CDS.5CDS
Lsi01G002840.1.CDS.4Lsi01G002840.1.CDS.4CDS
Lsi01G002840.1.CDS.3Lsi01G002840.1.CDS.3CDS
Lsi01G002840.1.CDS.2Lsi01G002840.1.CDS.2CDS
Lsi01G002840.1.CDS.1Lsi01G002840.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G002840.1Lsi01G002840.1-proteinpolypeptide