Lsi01G002260.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G002260.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr01: 2067695 .. 2068685 (-)
Sequence length	831
RNA-Seq Expression	Lsi01G002260.1
Synteny	Lsi01G002260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAACACCTTTGTCTTCTTCAAACACTCATCCCTTTTCTTTTTTCTTTTTTCTTTTTTATTTTTATATATAAACATTATCTTAATCTCTCTTTCTCTCTCTCTCTCTCTCTTCTTTTTCTTTTTCTTGGATTTCAAATTCAATTGGGTTCCAAATTCCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACATCTTTTTTTTTCTCTCTCTCTCTTGGTTTTAGATTTATGATGCTTTGGTTTCACTTTCAAATTTGGGAACCAAAATTACCAAATAATGTCTTCATATATTCCTTTGTGTTTAGAATTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTAAGCTTCCAACTTTTTTTTTTCCCTTAATGGGATCGATGATAATGGAGTTTCACAGTCCCAGCCTAGAAAACAAAAGCAGAGGGGGGCCCTCAAGAAAAAGAAAAAGATCCACCCTATACAGTTCCTATTTTGTTTATTTTGTACAAGTTCAATAGTTGATATAACACATTATTGTTGCTAATCCAAAGTTCAAGGCCTATAACATGAATCTCTTTGAGCTGTTGACTAACACCATTTCTATTCTTTCTTTTCCCCTGTGAATATGAAATTATTACATGTTTAATTTGAGTCTCATTACCCTTGAGTTATGTTTA

mRNA sequence

AAGAAAACACCTTTGTCTTCTTCAAACACTCATCCCTTTTCTTTTTTCTTTTTTCTTTTTTATTTTTATATATAAACATTATCTTAATCTCTCTTTCTCTCTCTCTCTCTCTCTTCTTTTTCTTTTTCTTGGATTTCAAATTCAATTGGGTTCCAAATTCCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTAAGCTTCCAACTTTTTTTTTTCCCTTAATGGGATCGATGATAATGGAGTTTCACAGTCCCAGCCTAGAAAACAAAAGCAGAGGGGGGCCCTCAAGAAAAAGAAAAAGATCCACCCTATACAGTTCCTATTTTGTTTATTTTGTACAAGTTCAATAGTTGATATAACACATTATTGTTGCTAATCCAAAGTTCAAGGCCTATAACATGAATCTCTTTGAGCTGTTGACTAACACCATTTCTATTCTTTCTTTTCCCCTGTGAATATGAAATTATTACATGTTTAATTTGAGTCTCATTACCCTTGAGTTATGTTTA

Coding sequence (CDS)

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGA

Protein sequence

MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVRKI

Homology

[Close]

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A0A0KLQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.4e-42
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSN----------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVRKI 110
           QR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFRVFWC V++I
Sbjct: 61  QRTVYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSCFKFRVFWCYVKQI 99

[Close]

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A314ZRE6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19857 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNEYPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGRIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

[Close]

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A314YAR0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_33883 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNECPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGRIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

[Close]

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A6P5SBA8 (uncharacterized protein LOC110756101 isoform X1 OS=Prunus avium OX=42229 GN=LOC110756101 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNECPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGKIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

[Close]

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A2I4H1I2 (uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 8.2e-20
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPE PFS S+   +   T + +V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVL--NSRSRRHKS-CFKFRVFWCSVR 108
           QR+V++SSSG++F + D+  KL++ L  + R R+H+S CF   V    VR
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCCFRVR 110

[Close]

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: XP_038892892.1 (uncharacterized protein LOC120081796 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIP+LPFSPSN I+TSN   TPKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPL
Sbjct: 1   MSIPQLPFSPSNFIATSNNN-TPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVR 108
           QRSVYLSSSGQVFNQTDLH KLQTVLNSR RRHKSCFKFRVFWCSVR
Sbjct: 61  QRSVYLSSSGQVFNQTDLHTKLQTVLNSRRRRHKSCFKFRVFWCSVR 106

[Close]

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG6581370.1 (hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSNFIATSH---TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKFRVFWCSVRKI 110
           QRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKFRVFWCSVR+I
Sbjct: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI 107

[Close]

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAE8647723.1 (hypothetical protein Csa_003961 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSN----------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWC 105
           QR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFR   C
Sbjct: 61  QRTVYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSCFKFRFKCC 94

[Close]

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG7034657.1 (hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSNFIATSH---TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKFR 101
           QRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKFR
Sbjct: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFR 98

[Close]

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG7026513.1 (hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 18  NTTPTPK-VQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQT 77
           +TT TPK VQRV KSTSDRLLQKF DATEFGFDY+ SGLWSPPLQR+VYLSSSG+VFN T
Sbjct: 4   STTATPKLVQRVPKSTSDRLLQKFCDATEFGFDYDTSGLWSPPLQRTVYLSSSGRVFNPT 63

Query: 78  DLHRKLQTVLNS-RSRRHKSCFKFR 101
           DL RKL+ VL+S RSRR  SCFKFR
Sbjct: 64  DLQRKLENVLSSDRSRRETSCFKFR 88

The following BLAST results are available for this feature:

BLAST of Lsi01G002260.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ8	3.4e-42	83.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1	[more]
A0A314ZRE6	3.7e-20	55.10	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_198...	[more]
A0A314YAR0	4.8e-20	55.10	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_338...	[more]
A0A6P5SBA8	4.8e-20	55.10	uncharacterized protein LOC110756101 isoform X1 OS=Prunus avium OX=42229 GN=LOC1...	[more]
A0A2I4H1I2	8.2e-20	51.82	uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Lsi01G002260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892892.1	2.8e-46	91.59	uncharacterized protein LOC120081796 [Benincasa hispida]	[more]
KAG6581370.1	2.3e-40	80.00	hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647723.1	1.1e-37	82.69	hypothetical protein Csa_003961 [Cucumis sativus]	[more]
KAG7034657.1	1.1e-34	79.21	hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7026513.1	3.2e-26	80.00	hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi01G002260.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR34287:SF2	OS06G0551500 PROTEIN	coord: 12..104
None	No IPR available	PANTHER	PTHR34287	OS06G0551500 PROTEIN-RELATED	coord: 12..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi01G002260	Lsi01G002260	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002260.1.exon.2	Lsi01G002260.1.exon.2	exon
Lsi01G002260.1.exon.1	Lsi01G002260.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002260.1.three_prime_UTR.1	Lsi01G002260.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002260.1.CDS.2	Lsi01G002260.1.CDS.2	CDS
Lsi01G002260.1.CDS.1	Lsi01G002260.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi01G002260.1.five_prime_UTR.1	Lsi01G002260.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi01G002260.1	Lsi01G002260.1-protein	polypeptide