Lsi01G002260.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi01G002260.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr01: 2067695 .. 2068685 (-)
Sequence length831
RNA-Seq ExpressionLsi01G002260.1
SyntenyLsi01G002260.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAACACCTTTGTCTTCTTCAAACACTCATCCCTTTTCTTTTTTCTTTTTTCTTTTTTATTTTTATATATAAACATTATCTTAATCTCTCTTTCTCTCTCTCTCTCTCTCTTCTTTTTCTTTTTCTTGGATTTCAAATTCAATTGGGTTCCAAATTCCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTAAGCTGCTGCCTACATCTTTTTTTTTCTCTCTCTCTCTTGGTTTTAGATTTATGATGCTTTGGTTTCACTTTCAAATTTGGGAACCAAAATTACCAAATAATGTCTTCATATATTCCTTTGTGTTTAGAATTAGAAGTGTGCAGTTTATATGTTGTAGGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTAAGCTTCCAACTTTTTTTTTTCCCTTAATGGGATCGATGATAATGGAGTTTCACAGTCCCAGCCTAGAAAACAAAAGCAGAGGGGGGCCCTCAAGAAAAAGAAAAAGATCCACCCTATACAGTTCCTATTTTGTTTATTTTGTACAAGTTCAATAGTTGATATAACACATTATTGTTGCTAATCCAAAGTTCAAGGCCTATAACATGAATCTCTTTGAGCTGTTGACTAACACCATTTCTATTCTTTCTTTTCCCCTGTGAATATGAAATTATTACATGTTTAATTTGAGTCTCATTACCCTTGAGTTATGTTTA

mRNA sequence

AAGAAAACACCTTTGTCTTCTTCAAACACTCATCCCTTTTCTTTTTTCTTTTTTCTTTTTTATTTTTATATATAAACATTATCTTAATCTCTCTTTCTCTCTCTCTCTCTCTCTTCTTTTTCTTTTTCTTGGATTTCAAATTCAATTGGGTTCCAAATTCCCATCAATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGAAAGCTGTCATCTTTAGTGCTAAGCTTCCAACTTTTTTTTTTCCCTTAATGGGATCGATGATAATGGAGTTTCACAGTCCCAGCCTAGAAAACAAAAGCAGAGGGGGGCCCTCAAGAAAAAGAAAAAGATCCACCCTATACAGTTCCTATTTTGTTTATTTTGTACAAGTTCAATAGTTGATATAACACATTATTGTTGCTAATCCAAAGTTCAAGGCCTATAACATGAATCTCTTTGAGCTGTTGACTAACACCATTTCTATTCTTTCTTTTCCCCTGTGAATATGAAATTATTACATGTTTAATTTGAGTCTCATTACCCTTGAGTTATGTTTA

Coding sequence (CDS)

ATGTCCATCCCCGAACTGCCATTTTCACCTTCTAATTTAATTTCCACTTCCAATACTACTCCTACTCCAAAGGTTCAGAGGGTATCCAAATCCACTTCAGACAGATTGCTTCAGAAATTCTTCGATGCCACAGAATTTGGATTTGATTACGAGAGAAGTGGCCTCTGGTCTCCCCCTCTTCAACGCAGTGTTTATTTAAGCTCTTCAGGTCAAGTTTTCAATCAAACGGATTTGCATAGGAAACTTCAGACTGTGTTGAATTCTCGTAGTAGAAGACATAAAAGTTGTTTCAAATTCAGAGTGTTTTGGTGCTCTGTGAGGAAAATCTGA

Protein sequence

MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVRKI
Homology
BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A0A0KLQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.4e-42
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSN----------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVRKI 110
           QR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFRVFWC V++I
Sbjct: 61  QRTVYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSCFKFRVFWCYVKQI 99

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A314ZRE6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19857 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNEYPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGRIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A314YAR0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_33883 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNECPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGRIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A6P5SBA8 (uncharacterized protein LOC110756101 isoform X1 OS=Prunus avium OX=42229 GN=LOC110756101 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 9   SPSNLISTSNTTPT-PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLS 68
           SPS  +      PT P VQ V KSTSDRLLQKFFDA EF FDYE+SGLWSPP++R+V+LS
Sbjct: 13  SPSPGLPNECPPPTAPMVQLVPKSTSDRLLQKFFDAAEFDFDYEQSGLWSPPVKRTVFLS 72

Query: 69  SSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCS 106
           S G++F + ++  KL T++++ + +HK+C   R FWCS
Sbjct: 73  SQGKIFTEQEMLAKLSTLMDAPTSKHKAC--CRAFWCS 108

BLAST of Lsi01G002260.1 vs. ExPASy TrEMBL
Match: A0A2I4H1I2 (uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012687 PE=4 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 8.2e-20
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPE PFS S+   +   T + +V+ VSK  SDRL+QKF+D +EFGFDYE+SGLWSPP+
Sbjct: 1   MSIPESPFSSSSPSPSLPQTSSGRVELVSKFVSDRLVQKFYDVSEFGFDYEQSGLWSPPV 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVL--NSRSRRHKS-CFKFRVFWCSVR 108
           QR+V++SSSG++F + D+  KL++ L  + R R+H+S CF   V    VR
Sbjct: 61  QRTVFMSSSGKIFTEADILSKLRSALQRHRRGRKHRSLCFNVLVCCFRVR 110

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: XP_038892892.1 (uncharacterized protein LOC120081796 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46
Identity = 98/107 (91.59%), Postives = 100/107 (93.46%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIP+LPFSPSN I+TSN   TPKVQRVSKSTSDRLLQKFFDATEFGFDYE SGLWSPPL
Sbjct: 1   MSIPQLPFSPSNFIATSNNN-TPKVQRVSKSTSDRLLQKFFDATEFGFDYETSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWCSVR 108
           QRSVYLSSSGQVFNQTDLH KLQTVLNSR RRHKSCFKFRVFWCSVR
Sbjct: 61  QRSVYLSSSGQVFNQTDLHTKLQTVLNSRRRRHKSCFKFRVFWCSVR 106

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG6581370.1 (hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSNFIATSH---TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKFRVFWCSVRKI 110
           QRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKFRVFWCSVR+I
Sbjct: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFRVFWCSVRQI 107

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAE8647723.1 (hypothetical protein Csa_003961 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 86/104 (82.69%), Postives = 88/104 (84.62%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN          PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSN----------PKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSCFKFRVFWC 105
           QR+VYL+SSGQV NQTDLH KLQTVLNSRSR HKSCFKFR   C
Sbjct: 61  QRTVYLTSSGQVLNQTDLHTKLQTVLNSRSRTHKSCFKFRFKCC 94

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG7034657.1 (hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 0

Query: 1   MSIPELPFSPSNLISTSNTTPTPKVQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPL 60
           MSIPELPFSPSN I+TS+   TP VQ+VSK+TSDRLLQKFFDATEFGFDYERSGLWSPPL
Sbjct: 1   MSIPELPFSPSNFIATSH---TPTVQKVSKATSDRLLQKFFDATEFGFDYERSGLWSPPL 60

Query: 61  QRSVYLSSSGQVFNQTDLHRKLQTVLNSRSRRHKSC-FKFR 101
           QRSVYLS+SG+VFNQ DLHRKL++VL+SR +R + C FKFR
Sbjct: 61  QRSVYLSASGEVFNQADLHRKLESVLSSRRKREEKCRFKFR 98

BLAST of Lsi01G002260.1 vs. NCBI nr
Match: KAG7026513.1 (hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 18  NTTPTPK-VQRVSKSTSDRLLQKFFDATEFGFDYERSGLWSPPLQRSVYLSSSGQVFNQT 77
           +TT TPK VQRV KSTSDRLLQKF DATEFGFDY+ SGLWSPPLQR+VYLSSSG+VFN T
Sbjct: 4   STTATPKLVQRVPKSTSDRLLQKFCDATEFGFDYDTSGLWSPPLQRTVYLSSSGRVFNPT 63

Query: 78  DLHRKLQTVLNS-RSRRHKSCFKFR 101
           DL RKL+ VL+S RSRR  SCFKFR
Sbjct: 64  DLQRKLENVLSSDRSRRETSCFKFR 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLQ83.4e-4283.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519730 PE=4 SV=1[more]
A0A314ZRE63.7e-2055.10Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_198... [more]
A0A314YAR04.8e-2055.10Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_338... [more]
A0A6P5SBA84.8e-2055.10uncharacterized protein LOC110756101 isoform X1 OS=Prunus avium OX=42229 GN=LOC1... [more]
A0A2I4H1I28.2e-2051.82uncharacterized protein LOC109012687 isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
Match NameE-valueIdentityDescription
XP_038892892.12.8e-4691.59uncharacterized protein LOC120081796 [Benincasa hispida][more]
KAG6581370.12.3e-4080.00hypothetical protein SDJN03_21372, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647723.11.1e-3782.69hypothetical protein Csa_003961 [Cucumis sativus][more]
KAG7034657.11.1e-3479.21hypothetical protein SDJN02_04387 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7026513.13.2e-2680.00hypothetical protein SDJN02_10515, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR34287:SF2OS06G0551500 PROTEINcoord: 12..104
NoneNo IPR availablePANTHERPTHR34287OS06G0551500 PROTEIN-RELATEDcoord: 12..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi01G002260Lsi01G002260gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002260.1.exon.2Lsi01G002260.1.exon.2exon
Lsi01G002260.1.exon.1Lsi01G002260.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002260.1.three_prime_UTR.1Lsi01G002260.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002260.1.CDS.2Lsi01G002260.1.CDS.2CDS
Lsi01G002260.1.CDS.1Lsi01G002260.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi01G002260.1.five_prime_UTR.1Lsi01G002260.1.five_prime_UTR.1five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi01G002260.1Lsi01G002260.1-proteinpolypeptide