Lcy12g005480.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy12g005480.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr12: 21580549 .. 21584632 (+)
Sequence length	1080
RNA-Seq Expression	Lcy12g005480.1
Synteny	Lcy12g005480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGCATGAAATGTCCATTCCAATGGACACTAATGTAGCTCATATGCCACACTCTCAGCTACTACCAGCGATCACCAGTGACACGAGTCGGACAGACAACCTGATTGGGACAACTCAATCCACGATCCGTATGATTCTAACGTATGTGGAATATTTGATGTGCCCAGTTTCATTTTCAATAAGTTTGAATTCATATTTGCAGAGTTTGCTCGCTCAAAATGTGCCCCGACAGAGAACCGGTCGGAAGCGGGTTGGAACGAAGCCGTATACTCCCCCAATACAGGGGACGAAGAGAAAAAATGAAGGCTCCATTGTTCGGTATGATTGGGAACCTGTTTTAAGCATCCACGACCGCATGTATCCCGTGCCCGGTGTGGCCTTCAAGTGGGATCCAGTTGTAAGGTACTCCCCGCTACGAACCATCCCAGTTGTACTGTTCGAGGAGTTTCACCAATGGCTCTCAAATCCAAACAACGAAGAAGACACGAGGCAGTCGTTCGTGTCACATCAAATTGCAACTGAGAAGTGGGCCAGGCCCAATAAGCAGTTCTTCCGAAATGTTGCCCTCCCAAGTCAGTGGATACTCCATGACGTACGTTCCTTATACTGGACATTTCATTGTGACAAGTCAATGTCATCACTACTACAAATTTGGCCTTTGTTGACGGCTAAAAAGTATCAACTATCACATTCATTGACGCTTTTTAGAAGTTAATTGAAGTGGTATCAATAAAACTAAAGCGTCAAGATTACTGTTTTCATTGACGCTTATAGGACGTCAACAAAGATGTCTTTGTTGACGTTTATAAGCCATCAACAAAGACATTATTGACATGTTTTATCCGTCAATGATATTCATGAAGCGTCAACGTAGGCACCTTTGTAGACGTTTATTAGCCATCAAAAAATCGTATTATTGACACGTTTTATTCGTCAATGATATCCATAAAGCGTCAATGTTGCCATATTTATTGATATTTATAAACCATCAATATAAACCTATGTTGACGTTTTTTCAATGTCAATTATTGGATCAAAATTGTCAATATATACATCATTATGGTGTTTTTGATGTCATCTTTTAACCGTCAACTATACGTATTTGGAAAAAAAAAAACAAAAAAAAAACTCCCGTTGATTTTTACCCCTCCTATGCAACCTGCATTTACATAATAGTAGCTAGCTTCCAACTATAACGCCCCCAAAATTCAACCTAATATAAAGAACATTACTAAACTTCCCTCTAACCAAGTTTGATGTTATTAAAAATCTGGCACCATAACGACGTAATTATTACTAACAAAAAATTTTGGGTACCTGAAAAAAAAAAAATATGCACTTCTAAATCCAGAACATTGCCTTCATTTCACTTGACAATAGCATGACATGTTTAATACATTATATGAAGCTAACCCCAAAACTCAAGTATAAATAATACGAGTCAGATCTCGTAACAAACACATTGTTCATATAGAAATACAGAAGCAAATGAATCATAATTTCAGCCAAACATAAAATCATAATGAACTACTAGATTTCATTAAAATGGTTGTTCAAAATTTCATTATCACAACTTGCTTGCTAGCAAGCAATTATTGAATTTTTCATCTAGAAAAAGAGTTCAAAAGAAAAAATCTACAAAAACTGTATATTCAATCATAATCTCATCCAAAAATATAATAATAATAATAATGAACTAACATATTTTTGTTAACCAATAAGTTGTCGAAGATCTAAAAACTAACTAAAGACAAGCATCACATTAGGCCTTGTGGATACATTTGCACCATCTCCAATTTAGGAACTCCCGGTGAAGAAAAGCTTCAATACTAGAATGCAAATAATTCTCACTGTGAACTGGATAATCACAATTCCTCGAATATAATTCAATCTGTCAAAGATGTGAGGAAAAGAAAAAAAGGGATAATGAATAAACAGCTACACACTCAAAAATCAAAGTACTTCAAATCTGAGGAAAGACATTTTGAAAATGTGAAAGCAAGTATAGAATTACATGAACAAATGATCCAAATACAGTAAACATGAAACAGTAACTCTAAATCATACTTTTTTTTGGTTTGAAGTCGTCAAAGTCGAGAAAAACAGGAGAATCAAATAGGAAACCCTTGAATCTATTTTGTGTGTGTGTGTATCTTGTGGTGAGCGATTAGCAACAAATAAATTAACGGAATCAAACACTCCTGGAATGAACAATAAAATTGGGTAGACTGACGTATATTAAAAGGACCATTTGTTTACTGCAGTTCTTCAAATAGACCCAAACACACAAGTTAGGAAATGTTCAGTAGCATAAGTAGAATATGATTCCAGCAAATATTACATACAGTGACTGTAAGATGCAAATTATTGGAGATTCTTTAGAAAAAAGTTTGCTCACTAACCATTGTAGCAAACGATTGTTTCCTTTCAGGCTACCATACTTGCTTCAAGTACTTCCAAGTGTGTTCTGTAACAAGGAAAAGTTTGAAATTACTTGCCAATACAATGAATATATTTTATCATGAAACCAATCGTTAAAAGAAAAAGTGAAATAAAGATTGTCACTCATGAAATAAGAATATAGCATACTAGGACAGTTCATCACAAAGTCAACTAGCATACTAGGACTGCAATTTTGACTAACCAAAACATGTCAAAATAATAATACCTCTGTTTTATATAAGGTTACAACATGAAAATAGGAGAAAAAACAAGGAAACAAGAGGTGAGAATGTTGTCGAATACGACCTGATAGTTCTACCCACTCTCATTCTATTGGTTATACTACCACAAGCTAGCTACAAAATCATAAACAAACAACCAGACCATCACTTATCCAACCCAAGCATGCTTTCAAATGAACCAAAAGACACTAAACCAACTAAAGGCAGTCTCAACAAGCTACAATTAACTATAAAATTCTCATTTAGACATCATGCTTCACAATGAAACTCAACATCCTTATTTAAATCCAAAAGCAAAACTCAAGGCTTAAATCCAATTCATGCTAGCATATTAAATTCTCAAGGAAATTAGTCCAAAATATAGAACCTAGTCTGCTGACTACTTATCAACTCCAACAATCATGCAATGGGTTTAAAGCACGAAAAATATGCATCCAAATAGCTACTTACCATAGCCGAAAAGTACTTGATAAAACTATAAACTTCTTAGGTTTTAGACCCTTTAATCAACTAAAAAAAGGGAAAAACATTCTCAAATCAATAGGAGTCTAAATCAAGCATTCAGCTATGAGCCATTAAACTTAGAGACGTTTAGCACCCAAAAAACTTACCTAACCTCATACTGAAACTTGCTGCCCGGGTTTTAAATCCACTCCAACTCGACAATTGAGCCTTATAGAGATATGGGTAACTTGAATTAAACAACTAAAATCAATGGGTATTTGACTACACACAACAACCAACTCAAATTCAACCTAGAAACTCTTACTCACAGTTGGAAACGTTTAAAACCACCAGGAATTGAAGACCCACCGATCGAAATGCTGACAAGCGCAAAGGAAACGCTTGCTAGCCGTGACTATTCGCGATTTATACACCAGGATGTTGTTGTCATGAGCTAATGCACGTCAGAGATCGATTGGAGCTCGTGTCGAACAGGAAGCTCACCGGAGACACAAAGAAGAAAACGACAATGCCATTGCGTCAATCCTGCTCTCGAACGTCGACAGAGATCGAATGAGGAAAAGAGAGAGATTGCTAACAGACCACTCGTGCGGAAGACCCACTGCCGAAAACGTTGATACCGCGCGTCTCTGTGTTGTTTCAGCTCGCCGAAGAAGATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGGTTTGCTGCTACGACGGCGACCGGAGACGAGGAGTACTAGAGGGGCGACGGTCTATTTCTTCACGACAAGAAGAAAACAAAGATGATGGTGAAGGGGAAGGGAGGTGA

mRNA sequence

ATGGAGACGCATGAAATGTCCATTCCAATGGACACTAATGTAGCTCATATGCCACACTCTCAGCTACTACCAGCGATCACCAGTGACACGAGTCGGACAGACAACCTGATTGGGACAACTCAATCCACGATCCGTATGATTCTAACGTATGTGGAATATTTGATGTGCCCAGTTTCATTTTCAATAAGTTTGAATTCATATTTGCAGAGTTTGCTCGCTCAAAATGTGCCCCGACAGAGAACCGGTCGGAAGCGGGTTGGAACGAAGCCGTATACTCCCCCAATACAGGGGACGAAGAGAAAAAATGAAGGCTCCATTGTTCGGTATGATTGGGAACCTGTTTTAAGCATCCACGACCGCATGTATCCCGTGCCCGGTGTGGCCTTCAAGTGGGATCCAGTTGTAAGGTACTCCCCGCTACGAACCATCCCAGTTGTACTGTTCGAGGAGTTTCACCAATGGCTCTCAAATCCAAACAACGAAGAAGACACGAGGCAGTCGTTCGTGTCACATCAAATTGCAACTGAGAAGTGGGCCAGGCCCAATAAGCAGTTCTTCCGAAATGTTGCCCTCCCAAGTCAGTGGATACTCCATGACAGATCGATTGGAGCTCGTGTCGAACAGGAAGCTCACCGGAGACACAAAGAAGAAAACGACAATGCCATTGCGTCAATCCTGCTCTCGAACGTCGACAGAGATCGAATGAGGAAAAGAGAGAGATTGCTAACAGACCACTCGTGCGGAAGACCCACTGCCGAAAACGTTGATACCGCGCGTCTCTGTGTTGTTTCAGCTCGCCGAAGAAGATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGGTTTGCTGCTACGACGGCGACCGGAGACGAGGAGTACTAGAGGGGCGACGGTCTATTTCTTCACGACAAGAAGAAAACAAAGATGATGGTGAAGGGGAAGGGAGGTGA

Coding sequence (CDS)

ATGGAGACGCATGAAATGTCCATTCCAATGGACACTAATGTAGCTCATATGCCACACTCTCAGCTACTACCAGCGATCACCAGTGACACGAGTCGGACAGACAACCTGATTGGGACAACTCAATCCACGATCCGTATGATTCTAACGTATGTGGAATATTTGATGTGCCCAGTTTCATTTTCAATAAGTTTGAATTCATATTTGCAGAGTTTGCTCGCTCAAAATGTGCCCCGACAGAGAACCGGTCGGAAGCGGGTTGGAACGAAGCCGTATACTCCCCCAATACAGGGGACGAAGAGAAAAAATGAAGGCTCCATTGTTCGGTATGATTGGGAACCTGTTTTAAGCATCCACGACCGCATGTATCCCGTGCCCGGTGTGGCCTTCAAGTGGGATCCAGTTGTAAGGTACTCCCCGCTACGAACCATCCCAGTTGTACTGTTCGAGGAGTTTCACCAATGGCTCTCAAATCCAAACAACGAAGAAGACACGAGGCAGTCGTTCGTGTCACATCAAATTGCAACTGAGAAGTGGGCCAGGCCCAATAAGCAGTTCTTCCGAAATGTTGCCCTCCCAAGTCAGTGGATACTCCATGACAGATCGATTGGAGCTCGTGTCGAACAGGAAGCTCACCGGAGACACAAAGAAGAAAACGACAATGCCATTGCGTCAATCCTGCTCTCGAACGTCGACAGAGATCGAATGAGGAAAAGAGAGAGATTGCTAACAGACCACTCGTGCGGAAGACCCACTGCCGAAAACGTTGATACCGCGCGTCTCTGTGTTGTTTCAGCTCGCCGAAGAAGATGCTGTCGCTGGAGAAGACGCCGAAAATGCAACAGGAAGGACAGAGACGGATTGAGCGTGAGAGTGAACAACAGAGAGAGAGAGATCGGCTCGAAAAGAATCGCGAGAAGCTTACCCAGATTTGCATCGAATCGTTGTTACGATCTGCTGCTCGCGTCGGCGGTGGTTTGCTGCTACGACGGCGACCGGAGACGAGGAGTACTAGAGGGGCGACGGTCTATTTCTTCACGACAAGAAGAAAACAAAGATGATGGTGAAGGGGAAGGGAGGTGA

Protein sequence

METHEMSIPMDTNVAHMPHSQLLPAITSDTSRTDNLIGTTQSTIRMILTYVEYLMCPVSFSISLNSYLQSLLAQNVPRQRTGRKRVGTKPYTPPIQGTKRKNEGSIVRYDWEPVLSIHDRMYPVPGVAFKWDPVVRYSPLRTIPVVLFEEFHQWLSNPNNEEDTRQSFVSHQIATEKWARPNKQFFRNVALPSQWILHDRSIGARVEQEAHRRHKEENDNAIASILLSNVDRDRMRKRERLLTDHSCGRPTAENVDTARLCVVSARRRRCCRWRRRRKCNRKDRDGLSVRVNNREREIGSKRIARSLPRFASNRCYDLLLASAVVCCYDGDRRRGVLEGRRSISSRQEENKDDGEGEGR

Homology

The following BLAST results are available for this feature:

BLAST of Lcy12g005480.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g005480.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g005480.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g005480.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..359

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy12g005480	Lcy12g005480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g005480.1.exon1	Lcy12g005480.1.exon1	exon
Lcy12g005480.1.exon2	Lcy12g005480.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g005480.1.cds1	Lcy12g005480.1.cds1	CDS
Lcy12g005480.1.cds2	Lcy12g005480.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy12g005480.1	Lcy12g005480.1-protein	polypeptide