Lcy12g000200.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy12g000200.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Kinesin motor domain-containing protein
Location	Chr12: 231758 .. 233124 (+)
Sequence length	327
RNA-Seq Expression	Lcy12g000200.1
Synteny	Lcy12g000200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGGTAAAGTTTTATTCTGAAAATGTGGAAAATTTTAATACAAGATTCTAGAGAAATCTCTCACTCCATTCTCTCTTTTGTACAAGAATCACACACAACTGAATTTCCAGCTTCTTCTGTTTAAAACAAAATTTGTTTGAGAGTTTGTAACTTCTTGTGAGACTTGTAACTGATTTTAAACACATATTCAATATTTGTTTCACCTTTTAACAGTTTTGTCGTAAGAGTTGGAGTATGAATTAGTAAGTTTGTGGGTCCACAATAACTAGTTTGAATTCAACTCCCAATTCCTTGGCTAGTTGACACTCTTATGTTCCAGTTTAAGTTATTTTGTAAATAGTGTCTGTAATTGTGCTGTTTTGCAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGGTAAACATATTCTCTTGTAGATCTAAATTTCTCGGGTGCAGGTTTAAACTATTGATTCTTGAGTTTTCTGCTTAGTGGTGTTTATTTATATTAAGGTTTGTCGTTCTATTTGAGCTTCCATCACCATGTTTGCTTGATTTACTGTCTAAAATGCTGCCAAGTGTCATTCTTTGATGAATTTTCACGAGGTGTGCTAGTCTGTAATTCAAGGGTTTCTAGATATTTTTGTACTTCTAGGTACGTACGAATAATGTGATAGAGCACTGAGGACATTTTTTGATAGCTTTTCTAAAAGCAATGTGCTAGACATTTGAAATGTGTAATTTTATTTAGCAAGTTATGGCTGCCATCATCATCTATTGGATTTTATTTATATCTAGGTGTTCAATAGTATTTCCACAAATCATACTGTTTATGAGAAATTTCATGATGGATAGTTATTTGAGAAATCACATTTTCAACGATGTGATCATATGCCTTTCTCGAAAGTTCAAAACTAGTTAGATTCTTTTAGCTAGTACTGTAACCATGCCCTTGATTTAGTATATGGTATTTTATGGGCCTTTTCATTTATTGTTGGTATTCTATACGGTACTTCGGTATTGCTTATATGGGCGGTTTTATTTGTTTGATTTCCACTTCTTCAAGTAATGATGTCGTGTGTTCGATTTGATGCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

mRNA sequence

ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

Coding sequence (CDS)

ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

Protein sequence

MMKKRRYARSYSGSALFAYIHCRKQQRLYEEKEKLFDRLTEKASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLEVGSLLSQDS

Homology

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: Q9FKP4 (Kinesin-like protein KIN-14B OS=Arabidopsis thaliana OX=3702 GN=KIN14B PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-09
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN  + +KHK E+EQN QL+NQ+AQLL LEQEQKLQ QQ+DSTI  L+
Sbjct: 528 ENAMVVDKHKIEKEQNFQLRNQIAQLLQLEQEQKLQAQQQDSTIQNLQ 575

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: Q9LX99 (Kinesin-like protein KIN-14A OS=Arabidopsis thaliana OX=3702 GN=KIN14A PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: B9FS74 (Kinesin-like protein KIN-14L OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14L PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-07
Identity = 27/57 (47.37%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    + EN+ LAEKH+ E+EQN QL++Q+++LL +EQEQK+++ +RD TI +L+
Sbjct: 523 STLQADLKSENLMLAEKHRIEKEQNNQLRDQISRLLEVEQEQKIKMHERDLTIQSLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A5A7SYP5 (Kinesin-like protein KCA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003240 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A0A0KJY7 (Kinesin motor domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499030 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A1S3B1C7 (kinesin-like protein KCA1 OS=Cucumis melo OX=3656 GN=LOC103484934 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A6J1HFV6 (kinesin-like protein KIN-14B OS=Cucurbita moschata OX=3662 GN=LOC111463188 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +MEN+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMENISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

[Close]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A6J1KUW3 (kinesin-like protein KIN-14B OS=Cucurbita maxima OX=3661 GN=LOC111497435 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.2e-12
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +M+N+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMDNISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

[Close]

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: KAA0036342.1 (kinesin-like protein KCA1 [Cucumis melo var. makuwa] >TYK12736.1 kinesin-like protein KCA1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: XP_004143446.1 (kinesin-like protein KIN-14A [Cucumis sativus] >KGN48707.1 hypothetical protein Csa_003247 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: QWT43338.1 (kinesin-like protein KIN14I [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: XP_008440544.1 (PREDICTED: kinesin-like protein KCA1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: KAG6594903.1 (Kinesin-like protein KIN-14A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +MEN+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMENISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

[Close]

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G65460.1 (kinesin like protein for actin based chloroplast movement 2 )

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN  + +KHK E+EQN QL+NQ+AQLL LEQEQKLQ QQ+DSTI  L+
Sbjct: 528 ENAMVVDKHKIEKEQNFQLRNQIAQLLQLEQEQKLQAQQQDSTIQNLQ 575

[Close]

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G10470.1 (kinesin like protein for actin based chloroplast movement 1 )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

[Close]

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G10470.2 (kinesin like protein for actin based chloroplast movement 1 )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

The following BLAST results are available for this feature:

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKP4	8.1e-09	66.67	Kinesin-like protein KIN-14B OS=Arabidopsis thaliana OX=3702 GN=KIN14B PE=1 SV=1	[more]
Q9LX99	2.4e-08	60.42	Kinesin-like protein KIN-14A OS=Arabidopsis thaliana OX=3702 GN=KIN14A PE=1 SV=1	[more]
B9FS74	9.9e-07	47.37	Kinesin-like protein KIN-14L OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14L ...	[more]

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYP5	2.1e-12	78.95	Kinesin-like protein KCA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KJY7	2.1e-12	78.95	Kinesin motor domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4990...	[more]
A0A1S3B1C7	2.1e-12	78.95	kinesin-like protein KCA1 OS=Cucumis melo OX=3656 GN=LOC103484934 PE=3 SV=1	[more]
A0A6J1HFV6	3.7e-12	71.21	kinesin-like protein KIN-14B OS=Cucurbita moschata OX=3662 GN=LOC111463188 PE=3 ...	[more]
A0A6J1KUW3	8.2e-12	69.70	kinesin-like protein KIN-14B OS=Cucurbita maxima OX=3661 GN=LOC111497435 PE=3 SV...	[more]

BLAST of Lcy12g000200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036342.1	4.4e-12	78.95	kinesin-like protein KCA1 [Cucumis melo var. makuwa] >TYK12736.1 kinesin-like pr...	[more]
XP_004143446.1	4.4e-12	78.95	kinesin-like protein KIN-14A [Cucumis sativus] >KGN48707.1 hypothetical protein ...	[more]
QWT43338.1	4.4e-12	78.95	kinesin-like protein KIN14I [Citrullus lanatus subsp. vulgaris]	[more]
XP_008440544.1	4.4e-12	78.95	PREDICTED: kinesin-like protein KCA1 [Cucumis melo]	[more]
KAG6594903.1	7.6e-12	71.21	Kinesin-like protein KIN-14A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy12g000200.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65460.1	5.8e-10	66.67	kinesin like protein for actin based chloroplast movement 2	[more]
AT5G10470.1	1.7e-09	60.42	kinesin like protein for actin based chloroplast movement 1	[more]
AT5G10470.2	1.7e-09	60.42	kinesin like protein for actin based chloroplast movement 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..87
None	No IPR available	COILS	Coil	Coil	coord: 22..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy12g000200	Lcy12g000200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g000200.1.exon1	Lcy12g000200.1.exon1	exon
Lcy12g000200.1.exon2	Lcy12g000200.1.exon2	exon
Lcy12g000200.1.exon3	Lcy12g000200.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy12g000200.1.cds1	Lcy12g000200.1.cds1	CDS
Lcy12g000200.1.cds2	Lcy12g000200.1.cds2	CDS
Lcy12g000200.1.cds3	Lcy12g000200.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy12g000200.1	Lcy12g000200.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009904	chloroplast accumulation movement
biological_process	GO:0007018	microtubule-based movement
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0003777	microtubule motor activity