Lcy12g000200.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy12g000200.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionKinesin motor domain-containing protein
LocationChr12: 231758 .. 233124 (+)
Sequence length327
RNA-Seq ExpressionLcy12g000200.1
SyntenyLcy12g000200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGGTAAAGTTTTATTCTGAAAATGTGGAAAATTTTAATACAAGATTCTAGAGAAATCTCTCACTCCATTCTCTCTTTTGTACAAGAATCACACACAACTGAATTTCCAGCTTCTTCTGTTTAAAACAAAATTTGTTTGAGAGTTTGTAACTTCTTGTGAGACTTGTAACTGATTTTAAACACATATTCAATATTTGTTTCACCTTTTAACAGTTTTGTCGTAAGAGTTGGAGTATGAATTAGTAAGTTTGTGGGTCCACAATAACTAGTTTGAATTCAACTCCCAATTCCTTGGCTAGTTGACACTCTTATGTTCCAGTTTAAGTTATTTTGTAAATAGTGTCTGTAATTGTGCTGTTTTGCAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGGTAAACATATTCTCTTGTAGATCTAAATTTCTCGGGTGCAGGTTTAAACTATTGATTCTTGAGTTTTCTGCTTAGTGGTGTTTATTTATATTAAGGTTTGTCGTTCTATTTGAGCTTCCATCACCATGTTTGCTTGATTTACTGTCTAAAATGCTGCCAAGTGTCATTCTTTGATGAATTTTCACGAGGTGTGCTAGTCTGTAATTCAAGGGTTTCTAGATATTTTTGTACTTCTAGGTACGTACGAATAATGTGATAGAGCACTGAGGACATTTTTTGATAGCTTTTCTAAAAGCAATGTGCTAGACATTTGAAATGTGTAATTTTATTTAGCAAGTTATGGCTGCCATCATCATCTATTGGATTTTATTTATATCTAGGTGTTCAATAGTATTTCCACAAATCATACTGTTTATGAGAAATTTCATGATGGATAGTTATTTGAGAAATCACATTTTCAACGATGTGATCATATGCCTTTCTCGAAAGTTCAAAACTAGTTAGATTCTTTTAGCTAGTACTGTAACCATGCCCTTGATTTAGTATATGGTATTTTATGGGCCTTTTCATTTATTGTTGGTATTCTATACGGTACTTCGGTATTGCTTATATGGGCGGTTTTATTTGTTTGATTTCCACTTCTTCAAGTAATGATGTCGTGTGTTCGATTTGATGCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

mRNA sequence

ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

Coding sequence (CDS)

ATGATGAAGAAACGAAGATACGCAAGAAGTTATAGTGGTTCAGCGTTATTTGCCTACATCCACTGTAGAAAGCAACAGAGATTATATGAAGAAAAGGAGAAATTGTTTGATCGGTTGACAGAGAAAGCATCTTTGGTTGGATCACCCCAGATGGAGAACGTTTCACTTGCAGAAAAACATAAGACAGAAAGGGAACAAAATGCTCAGCTTAAAAATCAAGTAGCTCAACTCTTGCATTTGGAGCAAGAGCAGAAACTGCAGATACAACAGAGAGATTCAACAATTCATACTTTGGAGGTTGGTTCTCTATTATCTCAGGACTCTTGA

Protein sequence

MMKKRRYARSYSGSALFAYIHCRKQQRLYEEKEKLFDRLTEKASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLEVGSLLSQDS
Homology
BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: Q9FKP4 (Kinesin-like protein KIN-14B OS=Arabidopsis thaliana OX=3702 GN=KIN14B PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-09
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN  + +KHK E+EQN QL+NQ+AQLL LEQEQKLQ QQ+DSTI  L+
Sbjct: 528 ENAMVVDKHKIEKEQNFQLRNQIAQLLQLEQEQKLQAQQQDSTIQNLQ 575

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: Q9LX99 (Kinesin-like protein KIN-14A OS=Arabidopsis thaliana OX=3702 GN=KIN14A PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

BLAST of Lcy12g000200.1 vs. ExPASy Swiss-Prot
Match: B9FS74 (Kinesin-like protein KIN-14L OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14L PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-07
Identity = 27/57 (47.37%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    + EN+ LAEKH+ E+EQN QL++Q+++LL +EQEQK+++ +RD TI +L+
Sbjct: 523 STLQADLKSENLMLAEKHRIEKEQNNQLRDQISRLLEVEQEQKIKMHERDLTIQSLQ 579

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A5A7SYP5 (Kinesin-like protein KCA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003240 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A0A0KJY7 (Kinesin motor domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499030 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A1S3B1C7 (kinesin-like protein KCA1 OS=Cucumis melo OX=3656 GN=LOC103484934 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A6J1HFV6 (kinesin-like protein KIN-14B OS=Cucurbita moschata OX=3662 GN=LOC111463188 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +MEN+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMENISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

BLAST of Lcy12g000200.1 vs. ExPASy TrEMBL
Match: A0A6J1KUW3 (kinesin-like protein KIN-14B OS=Cucurbita maxima OX=3661 GN=LOC111497435 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.2e-12
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +M+N+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMDNISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: KAA0036342.1 (kinesin-like protein KCA1 [Cucumis melo var. makuwa] >TYK12736.1 kinesin-like protein KCA1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: XP_004143446.1 (kinesin-like protein KIN-14A [Cucumis sativus] >KGN48707.1 hypothetical protein Csa_003247 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: QWT43338.1 (kinesin-like protein KIN14I [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: XP_008440544.1 (PREDICTED: kinesin-like protein KCA1 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           ++L    +MEN+SLAEK KTE+EQNAQLKNQVAQLLHLEQEQKLQIQQRDSTI TL+
Sbjct: 523 STLQSDLKMENISLAEKLKTEKEQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQ 579

BLAST of Lcy12g000200.1 vs. NCBI nr
Match: KAG6594903.1 (Kinesin-like protein KIN-14A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 43  ASLVGSPQMENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE--V 102
           ++L    +MEN+SL EK+KTE+EQN QLKNQVAQLLHLEQEQKLQIQQRDSTI TL+  V
Sbjct: 523 STLQSDLKMENISLTEKYKTEKEQNTQLKNQVAQLLHLEQEQKLQIQQRDSTIQTLQSKV 582

Query: 103 GSLLSQ 107
            S+ SQ
Sbjct: 583 KSIESQ 588

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G65460.1 (kinesin like protein for actin based chloroplast movement 2 )

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN  + +KHK E+EQN QL+NQ+AQLL LEQEQKLQ QQ+DSTI  L+
Sbjct: 528 ENAMVVDKHKIEKEQNFQLRNQIAQLLQLEQEQKLQAQQQDSTIQNLQ 575

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G10470.1 (kinesin like protein for actin based chloroplast movement 1 )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

BLAST of Lcy12g000200.1 vs. TAIR 10
Match: AT5G10470.2 (kinesin like protein for actin based chloroplast movement 1 )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 52  ENVSLAEKHKTEREQNAQLKNQVAQLLHLEQEQKLQIQQRDSTIHTLE 100
           EN+ L +KH+ E+EQN+QL+NQ+AQ L L+QEQKLQ+QQ+DS I  L+
Sbjct: 532 ENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQKLQMQQQDSAIQNLQ 579

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FKP48.1e-0966.67Kinesin-like protein KIN-14B OS=Arabidopsis thaliana OX=3702 GN=KIN14B PE=1 SV=1[more]
Q9LX992.4e-0860.42Kinesin-like protein KIN-14A OS=Arabidopsis thaliana OX=3702 GN=KIN14A PE=1 SV=1[more]
B9FS749.9e-0747.37Kinesin-like protein KIN-14L OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14L ... [more]
Match NameE-valueIdentityDescription
A0A5A7SYP52.1e-1278.95Kinesin-like protein KCA1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0KJY72.1e-1278.95Kinesin motor domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4990... [more]
A0A1S3B1C72.1e-1278.95kinesin-like protein KCA1 OS=Cucumis melo OX=3656 GN=LOC103484934 PE=3 SV=1[more]
A0A6J1HFV63.7e-1271.21kinesin-like protein KIN-14B OS=Cucurbita moschata OX=3662 GN=LOC111463188 PE=3 ... [more]
A0A6J1KUW38.2e-1269.70kinesin-like protein KIN-14B OS=Cucurbita maxima OX=3661 GN=LOC111497435 PE=3 SV... [more]
Match NameE-valueIdentityDescription
KAA0036342.14.4e-1278.95kinesin-like protein KCA1 [Cucumis melo var. makuwa] >TYK12736.1 kinesin-like pr... [more]
XP_004143446.14.4e-1278.95kinesin-like protein KIN-14A [Cucumis sativus] >KGN48707.1 hypothetical protein ... [more]
QWT43338.14.4e-1278.95kinesin-like protein KIN14I [Citrullus lanatus subsp. vulgaris][more]
XP_008440544.14.4e-1278.95PREDICTED: kinesin-like protein KCA1 [Cucumis melo][more]
KAG6594903.17.6e-1271.21Kinesin-like protein KIN-14A, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT5G65460.15.8e-1066.67kinesin like protein for actin based chloroplast movement 2 [more]
AT5G10470.11.7e-0960.42kinesin like protein for actin based chloroplast movement 1 [more]
AT5G10470.21.7e-0960.42kinesin like protein for actin based chloroplast movement 1 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..87
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy12g000200Lcy12g000200gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy12g000200.1.exon1Lcy12g000200.1.exon1exon
Lcy12g000200.1.exon2Lcy12g000200.1.exon2exon
Lcy12g000200.1.exon3Lcy12g000200.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy12g000200.1.cds1Lcy12g000200.1.cds1CDS
Lcy12g000200.1.cds2Lcy12g000200.1.cds2CDS
Lcy12g000200.1.cds3Lcy12g000200.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy12g000200.1Lcy12g000200.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009904 chloroplast accumulation movement
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity