Lcy09g008900.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy09g008900.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 8613245 .. 8615367 (+)
Sequence length456
RNA-Seq ExpressionLcy09g008900.1
SyntenyLcy09g008900.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTGTGGGTTGAATTTGTACCTCAGTGTGTTGAGGCTTCGGTGCTTTCTTATATGGCATTGTTGTGATGTTTCTTCTGCAGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGTGATCAATCCAAGCAGCTTCAGCCACTACTCAAACCGGTGTGCAGAAATCAGGGGAGGTTTTTTGTTTTCCGTACTTTGTCCCTTATGTTTTGCATGGTTAGATTACTTTGTGGTCTGTGTATGTTTTTAGGCTGAAGGATGGGGCATTTGCATGTTTAGTGGATCCTAGGTTGAGGCTGGATGCACCTGAGCATCAGTCCCCTATGCTTTGTATGTGTAGATTACCTTGTGGTCTGTGTATGATTTAGGCTGAGGGGTGGGGCATTTGCAAGATTAGTGGATCCTAGGTTTGAGGTTGGATGCACCTGAGCATCAATATGTTATTCTTTATTGTGTTGCTTTGTTATAGTTGGATTGAAGTCATGCATTTGAGTAGTGGACCTATATTTGCTGGGGCAAGATTTAAAACTTTGAGCTTTATTTTGCTGAGATGAGGTGTTGGGATGATTAAGCATGATAAGGTCTTCATGTTGCTATTATGTTGTTTCTTTTGTTTGTGTTGAAGTGAGGCTTGTTAGCTAAATTTGAGCCTTTTAAAATTTCTTTGAGTTTTCTTGCATGTGTGAGCACTTGGCCTTCCTTGGTTAGTTCTGAAAGTTTAGAGCTGCTTTATGAGCTCCATAGATCTGTTGTCACCCCGACAGGGACAAGGTTTTCTATGTGGAAGTCTAATCCTTGCAAATTAGCATGTGAGGCTTACTTAGGGAAAGAAAAAATACATGCCTGCGAAAAGAAAATGGAGTGGTAAAAGGAAGGAGTGAGGTTTAAGGGTAAAAAGAGTTGCCTGCAGTGTGATCAATTAAGCCAACCAAAGGGTTAAACTCGGGTTATGGATCCCTGCATTGTAGTGTGAAAGCTAGTGCCCCGTCTGATAATAAAAAAAAAAAGAAAAAAAGGAAATTAAAAGAAAATAAAATGCATAAAGGAAAAGAGAAGGGATCTCCTTGTTCAGGCTCCTAAGTAATGAGATAGCATCTTATTTGGCTCTTTTAGCTTTTCATGCGAGGTTTTGTTTCCAGTGTAGGGGGAAGATGGGTGGAGGGTCTTATAAATTAGTCCTGGGCTAGTAGGGGTTGCTCTAGGTGAGGCTAAACACACACACATGCGAGAATTTCTTGGGAAAGTTTTGTTCTGTCTCATATTTTGTTAGTTTGCAGTAGCTTCTCATAGGTAAAAGGCTTAACATAGGTAGCGCATGGACTTGAGCATGATAAATGTCAACATGCGAATCTCGGTCAGTCATACAATAGAGTGGTAGGCTTGATCAAGGTGTAGTGAGTCTTAGGTTGGGGGATGTGATAGAGCAAATTTTGTTAATGTTTAACTCCTCCTAAATTGTTTTTCGTTGAATTATATGTGCAAGATGCTCTTTGATGGTATATTGTTGCAGACCTAAATCTTGAGATCAAGGTCCGTTGTTGAGTTGGATAGTCCGAAAATACTAGTGGCTGGCTTGGAGTTGAGATGATCGAAGAGTCGGAAAGCTAGCTGAATGGCAGATAGGCTGTCCTCTTAGATTGGGCCACGTGCTTTTCACGAGGGGAAGAGTGCTGAACCAGCTGACGAGTTTGGTTTTGGTTTTCAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

mRNA sequence

ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

Coding sequence (CDS)

ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

Protein sequence

MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSDLGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMVFALRDELAKIKNGKRTKNDLYRKGLPLRVWRVWFLSDFPFCNVSL
Homology
[Close]
BLAST of Lcy09g008900.1 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-06
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 0 

Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           M SAT    +++S++MAE   AV+G++L  ++G+ P++LETDSSR+ ++F  +  +D S+
Sbjct: 71  MASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF-SQPSEDLSE 130

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLA 96
            G  V+  +     S      F + EGN   H LA
Sbjct: 131 TGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLA 164

[Close]
BLAST of Lcy09g008900.1 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0 

Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           + SAT    HV S++ AE  AAV+G+R+ +E G+ P++LETDS R+ ++F  +  +  S 
Sbjct: 128 LASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARD-KEGLSK 187

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMV 107
            G+ +  ++  +         FT+  GN + H LA    + +E+ V
Sbjct: 188 TGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQENFV 232

[Close]
BLAST of Lcy09g008900.1 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 0 

Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           M SAT    +++S++MAE   AV+G++L  ++G+ P++LETDSSR+ ++F  +  +D S+
Sbjct: 71  MASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF-SQPSEDLSE 130

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLA 96
            G  V+  +     S      F + EGN   H LA
Sbjct: 131 TGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLA 164

[Close]
BLAST of Lcy09g008900.1 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-05
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0 

Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           + SAT    HV S++ AE  AAV+G+R+ +E G+ P++LETDS R+ ++F  +  +  S 
Sbjct: 128 LASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARD-KEGLSK 187

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMV 107
            G+ +  ++  +         FT+  GN + H LA    + +E+ V
Sbjct: 188 TGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQENFV 232

The following BLAST results are available for this feature:
BLAST of Lcy09g008900.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g008900.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CIF19.3e-0635.79uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1CDQ43.6e-0532.08uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
BLAST of Lcy09g008900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140628.11.9e-0535.79uncharacterized protein LOC111011237 [Momordica charantia][more]
XP_022139684.17.3e-0532.08uncharacterized protein LOC111010533 [Momordica charantia][more]
BLAST of Lcy09g008900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 9..95
e-value: 4.9E-8
score: 32.8

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy09g008900Lcy09g008900gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g008900.1.exon1Lcy09g008900.1.exon1exon
Lcy09g008900.1.exon2Lcy09g008900.1.exon2exon
Lcy09g008900.1.exon3Lcy09g008900.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy09g008900.1.cds1Lcy09g008900.1.cds1CDS
Lcy09g008900.1.cds2Lcy09g008900.1.cds2CDS
Lcy09g008900.1.cds3Lcy09g008900.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy09g008900.1Lcy09g008900.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity