Lcy09g008900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g008900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr09: 8613245 .. 8615367 (+)
RNA-Seq Expression	Lcy09g008900
Synteny	Lcy09g008900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTGTGGGTTGAATTTGTACCTCAGTGTGTTGAGGCTTCGGTGCTTTCTTATATGGCATTGTTGTGATGTTTCTTCTGCAGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGTGATCAATCCAAGCAGCTTCAGCCACTACTCAAACCGGTGTGCAGAAATCAGGGGAGGTTTTTTGTTTTCCGTACTTTGTCCCTTATGTTTTGCATGGTTAGATTACTTTGTGGTCTGTGTATGTTTTTAGGCTGAAGGATGGGGCATTTGCATGTTTAGTGGATCCTAGGTTGAGGCTGGATGCACCTGAGCATCAGTCCCCTATGCTTTGTATGTGTAGATTACCTTGTGGTCTGTGTATGATTTAGGCTGAGGGGTGGGGCATTTGCAAGATTAGTGGATCCTAGGTTTGAGGTTGGATGCACCTGAGCATCAATATGTTATTCTTTATTGTGTTGCTTTGTTATAGTTGGATTGAAGTCATGCATTTGAGTAGTGGACCTATATTTGCTGGGGCAAGATTTAAAACTTTGAGCTTTATTTTGCTGAGATGAGGTGTTGGGATGATTAAGCATGATAAGGTCTTCATGTTGCTATTATGTTGTTTCTTTTGTTTGTGTTGAAGTGAGGCTTGTTAGCTAAATTTGAGCCTTTTAAAATTTCTTTGAGTTTTCTTGCATGTGTGAGCACTTGGCCTTCCTTGGTTAGTTCTGAAAGTTTAGAGCTGCTTTATGAGCTCCATAGATCTGTTGTCACCCCGACAGGGACAAGGTTTTCTATGTGGAAGTCTAATCCTTGCAAATTAGCATGTGAGGCTTACTTAGGGAAAGAAAAAATACATGCCTGCGAAAAGAAAATGGAGTGGTAAAAGGAAGGAGTGAGGTTTAAGGGTAAAAAGAGTTGCCTGCAGTGTGATCAATTAAGCCAACCAAAGGGTTAAACTCGGGTTATGGATCCCTGCATTGTAGTGTGAAAGCTAGTGCCCCGTCTGATAATAAAAAAAAAAAGAAAAAAAGGAAATTAAAAGAAAATAAAATGCATAAAGGAAAAGAGAAGGGATCTCCTTGTTCAGGCTCCTAAGTAATGAGATAGCATCTTATTTGGCTCTTTTAGCTTTTCATGCGAGGTTTTGTTTCCAGTGTAGGGGGAAGATGGGTGGAGGGTCTTATAAATTAGTCCTGGGCTAGTAGGGGTTGCTCTAGGTGAGGCTAAACACACACACATGCGAGAATTTCTTGGGAAAGTTTTGTTCTGTCTCATATTTTGTTAGTTTGCAGTAGCTTCTCATAGGTAAAAGGCTTAACATAGGTAGCGCATGGACTTGAGCATGATAAATGTCAACATGCGAATCTCGGTCAGTCATACAATAGAGTGGTAGGCTTGATCAAGGTGTAGTGAGTCTTAGGTTGGGGGATGTGATAGAGCAAATTTTGTTAATGTTTAACTCCTCCTAAATTGTTTTTCGTTGAATTATATGTGCAAGATGCTCTTTGATGGTATATTGTTGCAGACCTAAATCTTGAGATCAAGGTCCGTTGTTGAGTTGGATAGTCCGAAAATACTAGTGGCTGGCTTGGAGTTGAGATGATCGAAGAGTCGGAAAGCTAGCTGAATGGCAGATAGGCTGTCCTCTTAGATTGGGCCACGTGCTTTTCACGAGGGGAAGAGTGCTGAACCAGCTGACGAGTTTGGTTTTGGTTTTCAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

mRNA sequence

ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

Coding sequence (CDS)

ATGTTATCGGCAACATTGGTGCAGCGGCACGTGCGAAGTCTGGAGATGGCCGAAGGATGGGCTGCGGTGAAGGGGATGAGACTGGTAGTGGAGATGGGTCTGGTTCCATTGGTGTTGGAGACTGATTCAAGTCGAGTGGCTGACATTTTCCAGGATGAGGTGGTGGATGACTACTCTGATCTGGGTGCTTTTGTGGTTGATTTACGAAAGGACATACCGGGATCTTCTTTTTTCGACTGCATGTTCACTCGAGGAGAGGGGAATGGTGTTGTGCACCAGTTGGCTTGTCTGGAGTGGAGGGAGGAAGAATCTATGGTTTTTGCGTTAAGGGATGAACTAGCGAAGATCAAGAATGGAAAGCGAACTAAGAACGATCTGTATCGGAAAGGACTGCCCCTCCGTGTGTGGAGGGTGTGGTTTTTGTCTGATTTTCCTTTCTGTAATGTTTCTCTCTGA

Protein sequence

MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSDLGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMVFALRDELAKIKNGKRTKNDLYRKGLPLRVWRVWFLSDFPFCNVSL

Homology

[Close]

BLAST of Lcy09g008900 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-06
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           M SAT    +++S++MAE   AV+G++L  ++G+ P++LETDSSR+ ++F  +  +D S+
Sbjct: 71  MASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF-SQPSEDLSE 130

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLA 96
            G  V+  +     S      F + EGN   H LA
Sbjct: 131 TGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLA 164

[Close]

BLAST of Lcy09g008900 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           + SAT    HV S++ AE  AAV+G+R+ +E G+ P++LETDS R+ ++F  +  +  S 
Sbjct: 128 LASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARD-KEGLSK 187

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMV 107
            G+ +  ++  +         FT+  GN + H LA    + +E+ V
Sbjct: 188 TGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQENFV 232

[Close]

BLAST of Lcy09g008900 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 34/95 (35.79%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           M SAT    +++S++MAE   AV+G++L  ++G+ P++LETDSSR+ ++F  +  +D S+
Sbjct: 71  MASATKYLENIQSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLF-SQPSEDLSE 130

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLA 96
            G  V+  +     S      F + EGN   H LA
Sbjct: 131 TGEIVLKAKNFWTQSLHASFNFVKREGNKAAHMLA 164

[Close]

BLAST of Lcy09g008900 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-05
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 1   MLSATLVQRHVRSLEMAEGWAAVKGMRLVVEMGLVPLVLETDSSRVADIFQDEVVDDYSD 60
           + SAT    HV S++ AE  AAV+G+R+ +E G+ P++LETDS R+ ++F  +  +  S 
Sbjct: 128 LASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARD-KEGLSK 187

Query: 61  LGAFVVDLRKDIPGSSFFDCMFTRGEGNGVVHQLACLEWREEESMV 107
            G+ +  ++  +         FT+  GN + H LA    + +E+ V
Sbjct: 188 TGSIIEYVKTHLATRLQVSYSFTKRTGNTIAHLLARRALQSQENFV 232

The following BLAST results are available for this feature:

BLAST of Lcy09g008900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g008900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIF1	9.3e-06	35.79	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1CDQ4	3.6e-05	32.08	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of Lcy09g008900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140628.1	1.9e-05	35.79	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
XP_022139684.1	7.3e-05	32.08	uncharacterized protein LOC111010533 [Momordica charantia]	[more]

BLAST of Lcy09g008900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 9..95 e-value: 4.9E-8 score: 32.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g008900.1	Lcy09g008900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity