Lcy07g011820.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011820.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr07: 40953102 .. 40953467 (+)
Sequence length	264
RNA-Seq Expression	Lcy07g011820.1
Synteny	Lcy07g011820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACCCAGTTGGAAACGATGCTAATGATCTTCCCTCATATGAAGGTACCACTGTCGTTACTCGTTTCTTTGAATCACTGTAAATTTCCGTTTCAGAAGTAAGTTAATGTCGAATTTGTAATTCTCTTATATGATATCTTGTTTCAGTTTAATTCAGTGATTGGAGTGTGGTTCGATGGTTCTCGAGGAAAGAAACTTTGCGGTTCAGTGATTCTTCGCTTTGACAAGCATATGAGAAAGGGGAGAGAAATTTTGTGTTTGTTTGCCATGAACTTGCAGTTGTTTAGTCTGTTCTGTAACAGTGGTGGTTTGGTGGACGTTGTCGGAGAACTGCTCGGAGTTGTAAGCATCGATCAACAATGA

mRNA sequence

ATGCTTACCCAGTTGGAAACGATGCTAATGATCTTCCCTCATATGAAGTTTAATTCAGTGATTGGAGTGTGGTTCGATGGTTCTCGAGGAAAGAAACTTTGCGGTTCAGTGATTCTTCGCTTTGACAAGCATATGAGAAAGGGGAGAGAAATTTTGTGTTTGTTTGCCATGAACTTGCAGTTGTTTAGTCTGTTCTGTAACAGTGGTGGTTTGGTGGACGTTGTCGGAGAACTGCTCGGAGTTGTAAGCATCGATCAACAATGA

Coding sequence (CDS)

ATGCTTACCCAGTTGGAAACGATGCTAATGATCTTCCCTCATATGAAGTTTAATTCAGTGATTGGAGTGTGGTTCGATGGTTCTCGAGGAAAGAAACTTTGCGGTTCAGTGATTCTTCGCTTTGACAAGCATATGAGAAAGGGGAGAGAAATTTTGTGTTTGTTTGCCATGAACTTGCAGTTGTTTAGTCTGTTCTGTAACAGTGGTGGTTTGGTGGACGTTGTCGGAGAACTGCTCGGAGTTGTAAGCATCGATCAACAATGA

Protein sequence

MLTQLETMLMIFPHMKFNSVIGVWFDGSRGKKLCGSVILRFDKHMRKGREILCLFAMNLQLFSLFCNSGGLVDVVGELLGVVSIDQQ

Homology

[Close]

BLAST of Lcy07g011820.1 vs. NCBI nr
Match: KAG7034970.1 (hypothetical protein SDJN02_01763, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 64/84 (76.19%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 2   LTQLETMLMIFPHMKFNSVIGVWFDGSRGKKLCGSVILRFDKHMRKGREILCLFAMNLQL 61
           + QL+TM M+ P MKF+SV GVWFDGSRGKK CGSVIL FD+ MRKGREILCLF++NL+L
Sbjct: 24  ILQLKTMQMVLPPMKFDSVNGVWFDGSRGKKPCGSVILCFDEQMRKGREILCLFSVNLRL 83

Query: 62  FSLFCNSGGLVDVVGELLGVVSID 86
           FSLFCNSG  VD V ELLGVVSID
Sbjct: 84  FSLFCNSGDSVDFVDELLGVVSID 107

[Close]

BLAST of Lcy07g011820.1 vs. NCBI nr
Match: KAG7010730.1 (hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1   MLTQLETMLMIFP---HMKFNSVIGVWFDGSRGKKLCGSVILRFDKHM 46
           +LTQLETM M+ P      FNSV  VWF+GSRGKKL GS ILRFDK +
Sbjct: 90  ILTQLETMRMVLPLSLRDSFNSVTEVWFNGSRGKKLYGSAILRFDKEI 137

The following BLAST results are available for this feature:

BLAST of Lcy07g011820.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011820.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034970.1	1.1e-26	76.19	hypothetical protein SDJN02_01763, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7010730.1	1.5e-05	64.58	hypothetical protein SDJN02_27526, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lcy07g011820.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy07g011820	Lcy07g011820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011820.1.exon1	Lcy07g011820.1.exon1	exon
Lcy07g011820.1.exon2	Lcy07g011820.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011820.1.cds1	Lcy07g011820.1.cds1	CDS
Lcy07g011820.1.cds2	Lcy07g011820.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy07g011820.1	Lcy07g011820.1-protein	polypeptide