Lcy07g011700.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy07g011700.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr07: 40846438 .. 40847024 (+)
Sequence length426
RNA-Seq ExpressionLcy07g011700.1
SyntenyLcy07g011700.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGGTACTTCAATAGTTTTGACTACTGTGGTGATGTTTCTCTGTATTCCCACCAGGTCATAATGGACGTAGCAAGTCTGTAAAGTGGCACAATCCAAAAGGTGTGCGCCTTAGTCAATTAGAATTTCTTCTATTTACTATAAAATGTCTTGCCTTTTTCGTCAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

mRNA sequence

ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

Coding sequence (CDS)

ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

Protein sequence

MNLVLKNNLTMWSGDNVGVDELIANIKTDKRIKLIPVILLFLVILKGNKMTVSFPRKVKLRNQAQGLPLFRNLRKNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRTGEDE
Homology
[Close]
BLAST of Lcy07g011700.1 vs. NCBI nr
Match: KAG6570891.1 (hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 75  KNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFH 134
           K  +FRQ  Q+R +  +K+  ++KLPYSR K+RT+SLKI CKNT S SETHTA + P   
Sbjct: 5   KRLSFRQHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTSSSSETHTA-QEPQLP 64

Query: 135 PRTGEDE 142
           P+ G++E
Sbjct: 65  PKDGKNE 69

[Close]
BLAST of Lcy07g011700.1 vs. NCBI nr
Match: KAG7010740.1 (hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 0 

Query: 78  NFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRT 137
           +F +  Q+R +  +K+  ++KLPYSR K+RT+SLKI CKNT S SETHTA + P   P+ 
Sbjct: 81  SFEKHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTFSSSETHTA-QEPQLPPKD 140

Query: 138 GEDE 142
           G++E
Sbjct: 141 GKNE 142

The following BLAST results are available for this feature:
BLAST of Lcy07g011700.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g011700.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy07g011700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570891.15.2e-0552.24hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010740.15.8e-0450.00hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lcy07g011700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..141

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy07g011700Lcy07g011700gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g011700.1.exon1Lcy07g011700.1.exon1exon
Lcy07g011700.1.exon2Lcy07g011700.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy07g011700.1.cds1Lcy07g011700.1.cds1CDS
Lcy07g011700.1.cds2Lcy07g011700.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy07g011700.1Lcy07g011700.1-proteinpolypeptide