Lcy07g011700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr07: 40846438 .. 40847024 (+)
RNA-Seq Expression	Lcy07g011700
Synteny	Lcy07g011700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGGTACTTCAATAGTTTTGACTACTGTGGTGATGTTTCTCTGTATTCCCACCAGGTCATAATGGACGTAGCAAGTCTGTAAAGTGGCACAATCCAAAAGGTGTGCGCCTTAGTCAATTAGAATTTCTTCTATTTACTATAAAATGTCTTGCCTTTTTCGTCAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

mRNA sequence

ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

Coding sequence (CDS)

ATGAACCTCGTGCTTAAAAATAATCTTACTATGTGGAGTGGTGACAACGTTGGAGTTGATGAGCTCATTGCTAATATCAAGACGGACAAGCGCATCAAATTAATCCCAGTTATCTTGCTCTTTCTCGTTATTCTCAAAGGCAATAAGATGACAGTCAGTTTTCCAAGGAAGGTGAAACTGCGAAACCAAGCACAAGGATTGCCATTATTTCGAAATCTGAGAAAAAATTGGAACTTCAGACAGCTCCTCCAGAACAGAAGGGAAACTGATGAAAAAGAAATCCGCATAGAAAAGCTTCCATATTCCAGGACAAAAGAAAGAACCATCTCTCTCAAAATAGTCTGTAAAAACACCCTCTCTCCCTCTGAAACCCACACTGCCTCAAGAGCTCCAGCTTTCCACCCAAGGACAGGGGAAGATGAGTAA

Protein sequence

MNLVLKNNLTMWSGDNVGVDELIANIKTDKRIKLIPVILLFLVILKGNKMTVSFPRKVKLRNQAQGLPLFRNLRKNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRTGEDE

Homology

[Close]

BLAST of Lcy07g011700 vs. NCBI nr
Match: KAG6570891.1 (hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 75  KNWNFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFH 134
           K  +FRQ  Q+R +  +K+  ++KLPYSR K+RT+SLKI CKNT S SETHTA + P   
Sbjct: 5   KRLSFRQHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTSSSSETHTA-QEPQLP 64

Query: 135 PRTGEDE 142
           P+ G++E
Sbjct: 65  PKDGKNE 69

[Close]

BLAST of Lcy07g011700 vs. NCBI nr
Match: KAG7010740.1 (hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 78  NFRQLLQNRRETDEKEIRIEKLPYSRTKERTISLKIVCKNTLSPSETHTASRAPAFHPRT 137
           +F +  Q+R +  +K+  ++KLPYSR K+RT+SLKI CKNT S SETHTA + P   P+ 
Sbjct: 81  SFEKHFQSRGKMIKKK-SLKKLPYSRAKQRTVSLKINCKNTFSSSETHTA-QEPQLPPKD 140

Query: 138 GEDE 142
           G++E
Sbjct: 141 GKNE 142

The following BLAST results are available for this feature:

BLAST of Lcy07g011700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy07g011700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570891.1	5.2e-05	52.24	hypothetical protein SDJN03_29806, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010740.1	5.8e-04	50.00	hypothetical protein SDJN02_27536, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lcy07g011700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy07g011700.1	Lcy07g011700.1	mRNA