Lcy07g011560.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy07g011560.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine-rich RNA-binding protein 3
Location	Chr07: 40560013 .. 40561840 (+)
Sequence length	823
RNA-Seq Expression	Lcy07g011560.1
Synteny	Lcy07g011560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTTGCAAAACGTACATTCTAAAATCACATCAATTGATGAGCTTCGCAATAGCATGATTTTTAGCTCCCCCTCGTAGAACTCGATCGCAATAACCAATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGTTGGTTTCTCTTTCGCAATCCAATCACACAGATGCGGCACCCACATGATTTCAAATGATTTAGACATTGAATTTGATCTTGTTTGTTCATGTGGATTGTAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGGTAATCGTGAATGTTGAGCTTAAGCCTTTGATATATGAGATGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTTAGACTTCAGTTCATCACGTCTGCTTCTGGGTCGAAACTTTTTGCTGCATTGCCATTCATAACTGATTATTCTGAGCATTCTTTTAAGATTTTATTTCGTTGGAGTTTCCTGATTTATGAGTCTTGTAACGAGAGACATGGAGCCTGGTGAAAATCAGGAGGGCAAAAGAGTTTCAGATGAGTAGGATCAGGAGCATACTAATTTGTTGCATTTTACTGTGAATGTGTGATATTTTTGGAATTTTGAGACAGCAAAACAATGAGAAATTTCGAGAATGAAAGTTCTGCACGAGGAGGAATTGTGAAATTCAATGAATTTGAGAGGTGGGAAATTAAAATTTGAAAGGAATTTGATGTCCATTGGTGATCATTCTGAAACTGAACCAGCAAAATAGCTCGAATACAACTAATAGAGTTCACTTGATATTGAATGAACACTGGAATTTTAGTGGTGATGTCCATTGGTGATCACTCTGAAACTTCACCAGAGTTGGGATAAATTCAATGACCACTGTGAAACTCCAGTGATCATCACCAAAGGAACTTTGATATCCATTGCTGATCATTCTAAAACTTCAACAGCAAATAGCTTATGGAGTTCATCTCTTAAGTTCTGAATGCTTGTATGTTTTCTTGACAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCATTAGAAAAAAGTTGTATGAACTTATGATTGTTTTTCACTTTTAAGGTTATCATAAATTAGTCTAAATGAAAGTCATCACATCACTTGCAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTATTTCATCTTCTTGTAGCATCAACATGTAACCTTGAAATGTTCAGTTCCTACTTCTTAATCTGAATCTGGAGCTTTGGTTTTGCAGGTAGACAAGTAGGGAATCAATAGTATGAAGAACCTCAAGTTTGAATTGTTTAATAAAAGCCAGAGAAATGCAATATCAGAATTCTTGCTTGTACGCTCTTATATATGCCGAAATATTTGGAAGAAATGAGGGATCACAATGCTTTGTAACGCAACTCATGCTTTATCTTTTAATGGTAATGATAGATAATTCATATAGTTCATTAGATTGATTTATTTGTCAACTTGGAGTTTGTATTAAAGCACCTTTTTTTTTTTTTTTGAGTTAAG

mRNA sequence

CAAATTTGCAAAACGTACATTCTAAAATCACATCAATTGATGAGCTTCGCAATAGCATGATTTTTAGCTCCCCCTCGTAGAACTCGATCGCAATAACCAATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTAGACAAGTAGGGAATCAATAGTATGAAGAACCTCAAGTTTGAATTGTTTAATAAAAGCCAGAGAAATGCAATATCAGAATTCTTGCTTGTACGCTCTTATATATGCCGAAATATTTGGAAGAAATGAGGGATCACAATGCTTTGTAACGCAACTCATGCTTTATCTTTTAATGGTAATGATAGATAATTCATATAGTTCATTAGATTGATTTATTTGTCAACTTGGAGTTTGTATTAAAGCACCTTTTTTTTTTTTTTTGAGTTAAG

Coding sequence (CDS)

ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGA

Protein sequence

MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSNIDNIVGRRS

Homology

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.0e-19
Identity = 45/100 (45.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 31  SQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGF 90
           S SS S   +    +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGF
Sbjct: 24  SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83

Query: 91  GFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDKVRGG 131
           GFV FT+ E A  A  A+DG+ L GR +++++A D+  GG
Sbjct: 84  GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.9e-18
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDK 127
           RGFGFV+F+  + A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 46  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAK 105
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 106 DAMDGKALLGRPLRISFALDK 127
             MDGK L GR +R++ A D+
Sbjct: 94  SEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 43  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQ 102
           S    KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 103 CAKDAMDGKALLGRPLRISFALDKVRG 130
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-17
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 43  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQ 102
           S    KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A 
Sbjct: 2   SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 103 CAKDAMDGKALLGRPLRISFALDKVRG 130
            A  AM+G++L GR +R+  A    RG
Sbjct: 62  VAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64
Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVVVPRLSNI+N++GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 129/151 (85.43%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVV+PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 150

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+ MLVARR LTNIQS TLR  CFCSQSS    SSSPS  NNKLFVAGLSWSMDE
Sbjct: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS----SSSPSALNNKLFVAGLSWSMDE 60

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRI 120
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN +DAQCAKDAMDGKALLGRPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLRI 120

Query: 121 SFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           SFALDKVRGGPVVVPRLSN+ N+VG++S
Sbjct: 121 SFALDKVRGGPVVVPRLSNVGNVVGQKS 144

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 123/148 (83.11%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+L+L+AR+ALTNIQ+P L FRCFCSQ S+SA SSSPS  +NKLFVAGLSWSMDE
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQ-STSALSSSPSAPSNKLFVAGLSWSMDE 77

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRI 120
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F N  DAQCAKDAMDGKA+LGRPL+I
Sbjct: 78  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKI 137

Query: 121 SFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           SFAL+KVRGGPV VPRLSNI+N+VGRRS
Sbjct: 138 SFALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 121/146 (82.88%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 2   MNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDER 61
           M++TN+ +L+AR+ALTNIQ+P L FRCFCSQS+S  P SS    NNKLFVAGLSWSMDER
Sbjct: 1   MSNTNTFLLLARKALTNIQTPFLGFRCFCSQSTS--PLSSSPSPNNKLFVAGLSWSMDER 60

Query: 62  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRIS 121
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNF N  DAQCAKDAMDGKA+LGRPLRIS
Sbjct: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFANGNDAQCAKDAMDGKAVLGRPLRIS 120

Query: 122 FALDKVRGGPVVVPRLSNIDNIVGRR 148
           FALDKVRG PVVVPRLSNI+N+VGRR
Sbjct: 121 FALDKVRGEPVVVPRLSNINNLVGRR 144

[Close]

BLAST of Lcy07g011560.1 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVVVPRLSNI+N++GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of Lcy07g011560.1 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWS 60
           MM++TN+LM + RRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVVVPRLSNI+N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVFGRRS 151

[Close]

BLAST of Lcy07g011560.1 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 129/151 (85.43%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVV+PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 150

[Close]

BLAST of Lcy07g011560.1 vs. NCBI nr
Match: XP_022140496.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-61
Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDE 60
           MM++TN+ MLVARR LTNIQS TLR  CFCSQSS    SSSPS  NNKLFVAGLSWSMDE
Sbjct: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS----SSSPSALNNKLFVAGLSWSMDE 60

Query: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRI 120
           RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN +DAQCAKDAMDGKALLGRPLRI
Sbjct: 61  RSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLRI 120

Query: 121 SFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           SFALDKVRGGPVVVPRLSN+ N+VG++S
Sbjct: 121 SFALDKVRGGPVVVPRLSNVGNVVGQKS 144

[Close]

BLAST of Lcy07g011560.1 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 7.1e-61
Identity = 128/151 (84.77%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWS 60
           MM++ N+LM +ARRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS
Sbjct: 1   MMSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN +DAQ AKDAMDGKALLGRP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNIDNIVGRRS 149
           LRISFALDKVRGGPVV+PRLSNI N+ GRRS
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNI-NVFGRRS 150

[Close]

BLAST of Lcy07g011560.1 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-37
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 29  FCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSR 88
           FC+ SSS++PSS       KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSR
Sbjct: 31  FCT-SSSASPSS-------KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSR 90

Query: 89  GFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRL 138
           GFGFV+F    DA  AKDAMDGK LLGRPLRISFAL++VRGGPVVVPRL
Sbjct: 91  GFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRL 131

[Close]

BLAST of Lcy07g011560.1 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-20
Identity = 45/100 (45.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 31  SQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGF 90
           S SS S   +    +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGF
Sbjct: 24  SLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 83

Query: 91  GFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDKVRGG 131
           GFV FT+ E A  A  A+DG+ L GR +++++A D+  GG
Sbjct: 84  GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of Lcy07g011560.1 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 46  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAK 105
           + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A 
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 106 DAMDGKALLGRPLRISFALDKVRGG 131
             MDGK L GR +R++ A D+  GG
Sbjct: 94  SEMDGKELNGRHIRVNPANDRPSGG 118

[Close]

BLAST of Lcy07g011560.1 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDK 127
           RGFGFV+F+  + A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of Lcy07g011560.1 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 31  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRS
Sbjct: 16  SQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query: 91  RGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDK 127
           RGFGFV+F+  + A  A   MDGK L GR +R++ A ++
Sbjct: 76  RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

The following BLAST results are available for this feature:

BLAST of Lcy07g011560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	7.0e-19	45.00	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	5.9e-18	49.49	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	2.2e-17	49.38	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
W8E7I1	3.8e-17	50.57	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
P98179	6.5e-17	49.43	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1	[more]

BLAST of Lcy07g011560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7F1	9.6e-64	86.09	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FYH8	1.2e-61	85.43	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CG90	1.5e-61	85.81	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A1S3C2R4	2.2e-60	83.11	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0LQB7	1.2e-58	82.88	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV...	[more]

BLAST of Lcy07g011560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986397.1	2.0e-63	86.09	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
XP_023512965.1	6.4e-62	84.77	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022944150.1	2.4e-61	85.43	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]	[more]
XP_022140496.1	3.2e-61	85.81	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]
KAG6570903.1	7.1e-61	84.77	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]

BLAST of Lcy07g011560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	1.5e-37	74.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	4.9e-20	45.00	glycine-rich RNA-binding protein 3	[more]
AT4G13850.4	1.4e-19	49.41	glycine-rich RNA-binding protein 2	[more]
AT3G23830.1	4.2e-19	49.49	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	4.2e-19	49.49	glycine-rich RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 48..121 e-value: 1.3E-27 score: 107.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 49..119 e-value: 4.9E-22 score: 77.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 47..125 score: 20.781038
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..128 e-value: 5.7E-33 score: 116.1
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 7..141
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 7..141
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy07g011560	Lcy07g011560	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011560.1.utr5p1	Lcy07g011560.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011560.1.exon1	Lcy07g011560.1.exon1	exon
Lcy07g011560.1.exon2	Lcy07g011560.1.exon2	exon
Lcy07g011560.1.exon3	Lcy07g011560.1.exon3	exon
Lcy07g011560.1.exon4	Lcy07g011560.1.exon4	exon
Lcy07g011560.1.exon5	Lcy07g011560.1.exon5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011560.1.cds1	Lcy07g011560.1.cds1	CDS
Lcy07g011560.1.cds2	Lcy07g011560.1.cds2	CDS
Lcy07g011560.1.cds3	Lcy07g011560.1.cds3	CDS
Lcy07g011560.1.cds4	Lcy07g011560.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy07g011560.1.utr3p1	Lcy07g011560.1.utr3p1	three_prime_UTR
Lcy07g011560.1.utr3p2	Lcy07g011560.1.utr3p2	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy07g011560.1	Lcy07g011560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0006002	fructose 6-phosphate metabolic process
biological_process	GO:0061615	glycolytic process through fructose-6-phosphate
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003872	6-phosphofructokinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0047334	diphosphate-fructose-6-phosphate 1-phosphotransferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding