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Lcy07g011560 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAATTTGCAAAACGTACATTCTAAAATCACATCAATTGATGAGCTTCGCAATAGCATGATTTTTAGCTCCCCCTCGTAGAACTCGATCGCAATAACCAATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGTTGGTTTCTCTTTCGCAATCCAATCACACAGATGCGGCACCCACATGATTTCAAATGATTTAGACATTGAATTTGATCTTGTTTGTTCATGTGGATTGTAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGGTAATCGTGAATGTTGAGCTTAAGCCTTTGATATATGAGATGTAGTCTACATGTTCGACGAAATGTCTAGTCGATTTTAGACTTCAGTTCATCACGTCTGCTTCTGGGTCGAAACTTTTTGCTGCATTGCCATTCATAACTGATTATTCTGAGCATTCTTTTAAGATTTTATTTCGTTGGAGTTTCCTGATTTATGAGTCTTGTAACGAGAGACATGGAGCCTGGTGAAAATCAGGAGGGCAAAAGAGTTTCAGATGAGTAGGATCAGGAGCATACTAATTTGTTGCATTTTACTGTGAATGTGTGATATTTTTGGAATTTTGAGACAGCAAAACAATGAGAAATTTCGAGAATGAAAGTTCTGCACGAGGAGGAATTGTGAAATTCAATGAATTTGAGAGGTGGGAAATTAAAATTTGAAAGGAATTTGATGTCCATTGGTGATCATTCTGAAACTGAACCAGCAAAATAGCTCGAATACAACTAATAGAGTTCACTTGATATTGAATGAACACTGGAATTTTAGTGGTGATGTCCATTGGTGATCACTCTGAAACTTCACCAGAGTTGGGATAAATTCAATGACCACTGTGAAACTCCAGTGATCATCACCAAAGGAACTTTGATATCCATTGCTGATCATTCTAAAACTTCAACAGCAAATAGCTTATGGAGTTCATCTCTTAAGTTCTGAATGCTTGTATGTTTTCTTGACAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCATTAGAAAAAAGTTGTATGAACTTATGATTGTTTTTCACTTTTAAGGTTATCATAAATTAGTCTAAATGAAAGTCATCACATCACTTGCAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTATTTCATCTTCTTGTAGCATCAACATGTAACCTTGAAATGTTCAGTTCCTACTTCTTAATCTGAATCTGGAGCTTTGGTTTTGCAGGTAGACAAGTAGGGAATCAATAGTATGAAGAACCTCAAGTTTGAATTGTTTAATAAAAGCCAGAGAAATGCAATATCAGAATTCTTGCTTGTACGCTCTTATATATGCCGAAATATTTGGAAGAAATGAGGGATCACAATGCTTTGTAACGCAACTCATGCTTTATCTTTTAATGGTAATGATAGATAATTCATATAGTTCATTAGATTGATTTATTTGTCAACTTGGAGTTTGTATTAAAGCACCTTTTTTTTTTTTTTTGAGTTAAG CAAATTTGCAAAACGTACATTCTAAAATCACATCAATTGATGAGCTTCGCAATAGCATGATTTTTAGCTCCCCCTCGTAGAACTCGATCGCAATAACCAATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGAAGCTCTTGGTAGACAAGTAGGGAATCAATAGTATGAAGAACCTCAAGTTTGAATTGTTTAATAAAAGCCAGAGAAATGCAATATCAGAATTCTTGCTTGTACGCTCTTATATATGCCGAAATATTTGGAAGAAATGAGGGATCACAATGCTTTGTAACGCAACTCATGCTTTATCTTTTAATGGTAATGATAGATAATTCATATAGTTCATTAGATTGATTTATTTGTCAACTTGGAGTTTGTATTAAAGCACCTTTTTTTTTTTTTTTGAGTTAAG ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGCTCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTACTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCCGAAGGTCTTGA MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSNIDNIVGRRS Homology
BLAST of Lcy07g011560 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 7.0e-19 Identity = 45/100 (45.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.9e-18 Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17 Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2) HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17 Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy Swiss-Prot
Match: P98179 (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 6.5e-17 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 9.6e-64 Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61 Identity = 129/151 (85.43%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.5e-61 Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60 Identity = 123/148 (83.11%), Postives = 138/148 (93.24%), Query Frame = 0
BLAST of Lcy07g011560 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58 Identity = 121/146 (82.88%), Postives = 132/146 (90.41%), Query Frame = 0
BLAST of Lcy07g011560 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63 Identity = 130/151 (86.09%), Postives = 141/151 (93.38%), Query Frame = 0
BLAST of Lcy07g011560 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 247.7 bits (631), Expect = 6.4e-62 Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Lcy07g011560 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61 Identity = 129/151 (85.43%), Postives = 139/151 (92.05%), Query Frame = 0
BLAST of Lcy07g011560 vs. NCBI nr
Match: XP_022140496.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]) HSP 1 Score: 245.4 bits (625), Expect = 3.2e-61 Identity = 127/148 (85.81%), Postives = 135/148 (91.22%), Query Frame = 0
BLAST of Lcy07g011560 vs. NCBI nr
Match: KAG6570903.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 244.2 bits (622), Expect = 7.1e-61 Identity = 128/151 (84.77%), Postives = 138/151 (91.39%), Query Frame = 0
BLAST of Lcy07g011560 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 153.3 bits (386), Expect = 1.5e-37 Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Lcy07g011560 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 ) HSP 1 Score: 95.1 bits (235), Expect = 4.9e-20 Identity = 45/100 (45.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Lcy07g011560 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 ) HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19 Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 0
BLAST of Lcy07g011560 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19 Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0
BLAST of Lcy07g011560 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19 Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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