Lcy07g001400.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG ATGGGACCTCATATAGTTAGGTCCCTTGCAAAAAGATACCATCATCTCCATATGGTTGTTAGATGTAAAACAACATCTTCCCAGTATGTTGCATCAAGAGCTAGAGATCCAACGTTTGAGAAACTGATGGATAAGTACAAAAATCTTCCCAAAGTGGTTGCTGTCCAAGATCTTATCCTTGCTAATCCAAGGAATCAATCAGCATCTCTAGAATTCCTCTCAAGGCTTTCCCAGAAGCTCCATCTCAATCGTAGTGCTCCCTCCTTCCTTCGCAAATATCCTCATATTTTCCACATATTCTATGATCCAAACAAGTCCCAGCCATTTTGCAAATTAACAGATACTGCCATCCAAATATTTTGTGAAGAAGCAGTTCATTGCCTCAGGTTGTTGACAGATTAG MGPHIVRSLAKRYHHLHMVVRCKTTSSQYVASRARDPTFEKLMDKYKNLPKVVAVQDLILANPRNQSASLEFLSRLSQKLHLNRSAPSFLRKYPHIFHIFYDPNKSQPFCKLTDTAIQIFCEEAVHCLRLLTD Homology
BLAST of Lcy07g001400.1 vs. ExPASy TrEMBL
Match: A0A6J1DW95 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC111024077 PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56 Identity = 112/124 (90.32%), Postives = 115/124 (92.74%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. ExPASy TrEMBL
Match: A0A6J1H9C9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111461311 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55 Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. ExPASy TrEMBL
Match: A0A0A0LWZ0 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G600890 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54 Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. ExPASy TrEMBL
Match: A0A6J1JGE7 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita maxima OX=3661 GN=LOC111485476 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 4.8e-54 Identity = 108/124 (87.10%), Postives = 113/124 (91.13%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. ExPASy TrEMBL
Match: A0A1S3BQP0 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103492459 PE=4 SV=1) HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53 Identity = 107/124 (86.29%), Postives = 112/124 (90.32%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. NCBI nr
Match: XP_038879589.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038879590.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida]) HSP 1 Score: 231.1 bits (588), Expect = 5.6e-57 Identity = 113/124 (91.13%), Postives = 117/124 (94.35%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. NCBI nr
Match: XP_023516230.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.4 bits (581), Expect = 3.6e-56 Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. NCBI nr
Match: XP_022157354.1 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]) HSP 1 Score: 228.0 bits (580), Expect = 4.7e-56 Identity = 112/124 (90.32%), Postives = 115/124 (92.74%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. NCBI nr
Match: XP_022960573.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata] >XP_022960574.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata]) HSP 1 Score: 224.6 bits (571), Expect = 5.2e-55 Identity = 110/124 (88.71%), Postives = 115/124 (92.74%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. NCBI nr
Match: XP_011660083.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN66400.1 hypothetical protein Csa_006877 [Cucumis sativus]) HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54 Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 0
BLAST of Lcy07g001400.1 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein ) HSP 1 Score: 155.2 bits (391), Expect = 3.6e-38 Identity = 77/108 (71.30%), Postives = 90/108 (83.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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