Lcy06g016380.1 (mRNA) Sponge gourd (P93075) v1

Overview
NameLcy06g016380.1
TypemRNA
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr06: 37402116 .. 37405846 (+)
Sequence length486
RNA-Seq ExpressionLcy06g016380.1
SyntenyLcy06g016380.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTATGACGAAGGAAAAATGGTGGAGAGAGATTCGAGTTTTAGGGGTTTAGAGTGAGAGGGATTTGAAGAGAAATATGGAGAAACTCGACTAGATCTAGGGGTTGTGCTATCGGTTCATGATCAAGTTTCATCAAACCCTCGATTTCAATTCTTGATTATATTGGCTATCAATGAATCAAAGGTCTTCTTTGACGCTCAGAGCTTCAAGGTTTTTGCAACGTTGTTCATCAGTGGGTCTTTGATAGGGGTGAGAAAAAAAAAGTCGAAAAACCGAGCCAACTGATCGAAACAGAACGCACCAACTTCGGTCGGTCAATTTTTTCATATTTTTGGTTGGGGTCGGTTTTACACATAGTAAAATCGACCTGTTGGTCGGTCGGCTCACCAAAAACGGCAAGAACCGATTAAACCGACCGACTTCTAAAAAAAAAAAGAAATAAGAGGTTGCGTGTCTGGCGAGGACTGTAGGCAGCGCCTGCAGCCTTTGATGGTCTTCCCAAGGATTTTATTAAAAAACAAAACTTTTAATTTAATTTTTTTTATTTCCTTCATAAGAGTCCTTCACTTCCCTACATTTCTTCCTCACTTTCTCTCTAATTTTTTCTTTTCTCCTCACTGTTTTCGTTTCTTATTCTCTTCTTCATTTTTTTGTAGTGTAGTGTATGAATAAAGTTGGGTGTCTTATCCTGGCAACACTATTGATACAACCCATTTTGTAATAGTTATAAATGATTTTATCTAAATCATTCATGTAGAGACATGTGAGTGGGGTGTCATATACAATGAATTTGTATTAGACTATACGACGAAATCATTAATTTTAAATAATTGGAGCTTATAATTTGTAGGTTCATAATGTCCCCTTGTTAGCTCATAGTAATACTAAAGGATCAATTTAGTTCGAAGAAAATTTGAATCAATTGGCAATGAGTGGGGTGACCCTTGTAGCTTATATATTGTGAGGTCTCTACTAATCTTTTCAATGTGGGATCCTCAACATGCCCACTCAAGATGGTGCCTCTTTGGGTTCACCATTCTTGGATCGGATCCCAATTTTTTCTTTGGACCGAATACCCGTTTAATGGGCTCTGATACCACATCAAATAACATGGGCTTCCATCTCAAAACCAATTGGCTATGAGTGGGTGACCCTTGTAGCTTATAAATTGTGAGGTCTCCACTAATCTTTTCAATGTGGGATCCTCAACAAGATATATTAAAGATAAAAGAGCAAAAATATATTTATCTTATTCGATACATTAATTATTAAAACGATTAATGTATATTCGATACATTAAAGAAAAATATATATTTGAAATTTGAATGAGATTCAAATAAGTTAAATATATATTGTAGAGGATTTGAATGAGATTCAAATAAATATAATATAATAGATATTAAAATATAATATTTTAATTATGACAAACATTTGCCCTAGGTCTCTATAAATAGGGCCCTTGGGTTGAGCCATGAACTAATTCAAAGTTGATTCCAATGCTTCTGCTGTGGGGTGAAGAGTTCGTTCCTGTCGGCTATGGGCCTTCACTCTATTCTCACCACCTTTAAGAATACCTTTATTCATATGAATGTCATCAACCAAGCCACTGAAGTTAGTAATATTTCCTCAAACATAGCTGCCAATCTCAGATTCAATCGGCAAGGCTATTCATCCTATTAAGGTAACAAGCAACAACCAAGGAAGAGGCCAAGGTGGAATCAGAGGTAATGGAAGGTCTAGAGGCAATGGAGGAAGAGGAAACTACTATCAAAACAGTGGCTCTAAGCCTACATGTTAGGTACATGGCAAATATGGATATTCTGCACCTGTTTGTTATCATAGGTTTGAGAAGGATTTTGTGTCCCCAAATCAAAACAGTGGGGGACAGAACACAACCTATATTGCCACACCAAAAATAGTTGTTGTCCCTAGTTGGTTGGCAGATGGTGGAGCATCCAATCATATTATTTCTGACCTAAACGATCTCTGTTGGTGATGACTCTAAAATTTTAATTACTAATGTTGGTCACAACATCGTCTATGATGCTTAAGAATATGTCTATGATATTGAAAAATATTTTACATGTCCCTAGTATTAAAAGAAACTTGTTGAGCATATCAAAATTGATTGTAGATAACAATTGTATTGTTGAATTTCATCGAATCATTGTTTTGTAAAGGACAAGGCAACAGGAAAGGTGGTGCTTGAAGGGAGTCTTAGAGATGGTCTTTAGCAACTCCAGTTAAACCTACCCAAGACAAGCTAAGAGTCAAGAAATCAAGTGTAACAAGTCTCCTCCTCAAATTTTGTGTATGTAGTTCGTCCAAAGTCTATTTATCACTACAAGAAAAACAGTGTTACTTGACATTTGGGTTTTTTAATTAGTTGACATTTTTAAACTTATGTAATTTTAACAAAAAAATGTCAAGACTTATGTAATTTTAACAAAAAAAAACGTCAAGAAAAATACAAAAACACGGAGTTTTATGAATTTTTTCGGATTTTTTCACGCTAAGGAAGACTTGATAGTTTAAAAATGTCAAGAATAATGAAATTTCTTTTAATTTAATAAAGGGCTTTTTCAAAATTAGGGTTTTTTCAGTACTTCTATTCTGAAAGCATGCCGCATAGGTACCCTCCCTCTCGCAAAAATCAATCAGACGCCGCACACCACCGTTCTTCTCGCGTGAAGTTACATTCGTAGACTCCCAGACGCCGGCGACGAGACATCCGACGGCGGCGAACGAGACACCCACGGCGGCGAACCTTCACGACCTTCCTAGACGCTGGCGACATGAGACATCCGATAATTTGAGGTCTTCACTCGCGACACCCAAACGCCTTCACTCGCGAGACACCCAGACGCCGCCGACACGAGACATCCGACGGCCTTCACTCGAGAACCTCGACAGCGGTGACTAGAAACTCGACGGCGGCAACACAAACACCCAAACGCCGGCGACTAGAAACTCGACGGCGACGAACAGCTTCATACACCCGTAGAACAGCTTCATTCCCTTTTTACCAACTGGTTCGCTTTCTTACCCCTCTTCTCAAGGTAACTTTTGATTTGGTTTTCTTGTATTGTATTTCAACGGTAATTTGTTTTTCCATCATTGTTTACTAATAATTTTATATTTGTTTGGTCTCATTCTACTACTTATAGCTCCACTCTTCTCTCTTTTGGTGGAGAACTATAGCACCTCAATTCTATTGTCACTCTTCAATAAGACGTGAACATGATGGATCTAATTTGTTGGATTTTTGCATGTAGGAGGAGCAACAAAAAGTTGTAATTGAGAAGGTTACACAAAATAAGAGAGAGTGCATTACAACAGTAAAAGGGTTATTAGACCTTTTGGTGAGCAATACTTTGTTTCCTATCCATGCTCGACATTCCTTATTGTTACTTTAATTTCAATAATAGTTTGTTTAACTTGATTATCTAGAAGTTAAACTAAGTGAGGCTTCAAAGAAATTTGGGAAAAGTTTGCTATTGGGGCCTGTGGTTATGGTTATTAACTTCTGGTCCATATTATTATAGCTCTTTAAGATATTTTGGTTATTGATTAAGTAAACCAAAGATGATGCTTGAAGAACTCTTGTAATTACAAGTAGCAGAACTTTATCTTTGATGGTTTTATGGGAACTAATATCCTATTAGATGTTAATAAACATTTTCCCTTTTGCATTTTTTTTTACGTTCAGGATTGTTGTTGTTCTTGA

mRNA sequence

ATGAAGGTACCCTCCCTCTCGCAAAAATCAATCAGACGCCGCACACCACCGTTCTTCTCGCGTGAAGTTACATTCGTAGACTCCCAGACGCCGGCGACGAGACATCCGACGGCGGCGAACGAGACACCCACGGCGGCGAACCTTCACGACCTTCCTAGACGCTGGCGACATGAGACATCCGATAATTTGAGGTCTTCACTCGCGACACCCAAACGCCTTCACTCGCGAGACACCCAGACGCCGCCGACACGAGACATCCGACGGCCTTCACTCGAGAACCTCGACAGCGAAACTCGACGGCGACGAACAGCTTCATACACCCGTAGAACAGCTTCATTCCCTTTTTACCAACTGGTTCGCTTTCTTACCCCTCTTCTCAAGGAGGAGCAACAAAAAGTTGTAATTGAGAAGGTTACACAAAATAAGAGAGAGTGCATTACAACAGTAAAAGGGTTATTAGACCTTTTGGATTGTTGTTGTTCTTGA

Coding sequence (CDS)

ATGAAGGTACCCTCCCTCTCGCAAAAATCAATCAGACGCCGCACACCACCGTTCTTCTCGCGTGAAGTTACATTCGTAGACTCCCAGACGCCGGCGACGAGACATCCGACGGCGGCGAACGAGACACCCACGGCGGCGAACCTTCACGACCTTCCTAGACGCTGGCGACATGAGACATCCGATAATTTGAGGTCTTCACTCGCGACACCCAAACGCCTTCACTCGCGAGACACCCAGACGCCGCCGACACGAGACATCCGACGGCCTTCACTCGAGAACCTCGACAGCGAAACTCGACGGCGACGAACAGCTTCATACACCCGTAGAACAGCTTCATTCCCTTTTTACCAACTGGTTCGCTTTCTTACCCCTCTTCTCAAGGAGGAGCAACAAAAAGTTGTAATTGAGAAGGTTACACAAAATAAGAGAGAGTGCATTACAACAGTAAAAGGGTTATTAGACCTTTTGGATTGTTGTTGTTCTTGA

Protein sequence

MKVPSLSQKSIRRRTPPFFSREVTFVDSQTPATRHPTAANETPTAANLHDLPRRWRHETSDNLRSSLATPKRLHSRDTQTPPTRDIRRPSLENLDSETRRRRTASYTRRTASFPFYQLVRFLTPLLKEEQQKVVIEKVTQNKRECITTVKGLLDLLDCCCS
Homology
The following BLAST results are available for this feature:
BLAST of Lcy06g016380.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g016380.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g016380.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy06g016380.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..44

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lcy06g016380Lcy06g016380gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy06g016380.1.exon1Lcy06g016380.1.exon1exon
Lcy06g016380.1.exon2Lcy06g016380.1.exon2exon
Lcy06g016380.1.exon3Lcy06g016380.1.exon3exon
Lcy06g016380.1.exon4Lcy06g016380.1.exon4exon
Lcy06g016380.1.exon5Lcy06g016380.1.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lcy06g016380.1.cds1Lcy06g016380.1.cds1CDS
Lcy06g016380.1.cds2Lcy06g016380.1.cds2CDS
Lcy06g016380.1.cds3Lcy06g016380.1.cds3CDS
Lcy06g016380.1.cds4Lcy06g016380.1.cds4CDS
Lcy06g016380.1.cds5Lcy06g016380.1.cds5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lcy06g016380.1Lcy06g016380.1-proteinpolypeptide