Lcy04g003580.1 (mRNA) Sponge gourd (P93075) v1

Overview


Name	Lcy04g003580.1
Type	mRNA
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr04: 25959256 .. 25961393 (+)
Sequence length	804
RNA-Seq Expression	Lcy04g003580.1
Synteny	Lcy04g003580.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGTAATTCAGTGTTGTTTAAGGGTCTTAAATGACCGTGTTTCCTCTGCGCCTTTTAATGACACTATGATTGTTCTTATTCCAAAGACCCAACATCCTAAGCGTATTTCTGAATTTAGGCCAATATCTCTATGTAATGTGGTGTATAAGATTATTTCTAAGGCCATTGTAAATAGAATGAAAGGAATTTTAGATGCCATTATATCAGATAATCAAAGTGCGTTTATTCTTAACCGATGTGTGATTGATAATGCGATGTTGGGCTATGAATGTATCCATTCTCTGCAAGGTCGGCAATCTGGTAAAGCAGGATGGGTGGCCTTGAAGCTCGATATGAGTAAGGCCTATGATCATGTGGAGTGGAATTTTGTTGCTCCATGATGAGTCAGTTGGGATTTACACAAAGTTGGGTAGACCTTATTTCTCTGTGTATTTCGACAGTCAGTTATTCTTTTAATTTTATTGGTGAGCAGCTGGGTCATATAATCCCTCAACATGGTCTTCGCCAGGGAGATTCTCTATCTCCGTATCTTTTTTTGTTTTGTGCTGAGGGCCTTTCTTGCCTGCTTAAGCATGTTGTGCGTAGTGGGACTATCTCGGGTTTTGAAATTGCAAAAGGTGGGCCACGCATCTCTCACCTCTTTTTTAAAGCCAGATTCAATGAAGGTATCGTAATTCGGTCTATTCTTCATCAATATGAAGGGGCATCCAGTTAGACAATTAACTTTTAGAAATCTATTATTTCTTTTAGTCCTAACACGCCTTGGCCAGTCTAGGCTACAATGTAGGGAATTTTTGGTATACAGAGTGTGCAGTGCCATCAATGCTACCTTGGGCTACCTTCCTTTATGCCTCAGAATAGACGGACTACGATGGGTTTTATTAAAGACAGAGTTTGCGGCACATACAGGGTTGGTCTGGTGATCTTTTCTCAGTAAGGGGAAAAAATTCTCCTGATAGCAGTGATCCAGACGGTTCCTTGTTCTTCCATGAACTGTTTTTGCCTCCCGTTGAGTCTGATTCGTGAGCTTCAACAAATGATGGCACGATTCTGGTGGAATGGGGCTTCTAAGGATAAGAAGATTCACTAGGTGAGTTGGCATAATATGTGTTTGCCTAAATGCCTAGAGGGAATGGGTTTCCGTGACTTGGAATCCTTTAATCAGTCGTTGTTGGGCAAACAAGGGTGGAGGATTGTGTGTAGTCCATCCTCTTTATTGGATCGGGCTTTGCGGTCTCGATATTTCAAGAATAGCGATTTTTTATTAGCAAATTTGGGTTGGCGGCTATCTTTCATCTAGCGCAGCCTGTTATGGGGTCGGGAATTACTCAGGCAGGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG

mRNA sequence

ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG

Coding sequence (CDS)

ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG

Protein sequence

MNQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDDGLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMAQSCVTQSLPSSSHSEVSLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSCKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL

Homology

[Close]

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 92/197 (46.70%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 48  GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFT-GSGSWDSTKVYANF 107
           GL WRIG+  S+ +YG NW+P   +L++ S P LPL S+V+SL     G W    V   F
Sbjct: 714 GLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQGDVVRDEF 773

Query: 108 EPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI--------MAQSCVTQSLPSSSHSEV 167
            P EA+ ILS+PIG    +D+LIW++EKTG++++        +   CV Q+  SSS  EV
Sbjct: 774 TPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QAPSSSSSEEV 833

Query: 168 SLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFW 227
             WW G W M+IP++IK+F WRLCLDRLPTG  L++RG++  +    CGR+GED IH+FW
Sbjct: 834 RCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFW 893

Query: 228 SCKAAKRHWRVSQFHHL 236
            CK A+  W  S+F  L
Sbjct: 894 ICKFAEALWINSKFGKL 909

[Close]

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 2   NQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDD 48
           N  LLKPF   E+++A HQIHP K+  P+  S AFYK  WH+VG D
Sbjct: 322 NCDLLKPFCEEEMIMALHQIHPHKALGPDRFSSAFYKNFWHIVGQD 367

HSP 2 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 76/168 (45.24%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 106 FEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSE-VS 165
           F   E + ILS+P+G   + D+LIW+FEK G+ T+     +A      +  S+S SE ++
Sbjct: 2   FTYDEVKTILSIPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLA 61

Query: 166 LWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWS 225
            WWK +W +N+PS+IK+FFWR CLDRLPTG+ L  RG+D    Y+ CG+ GED +H+FW+
Sbjct: 62  KWWKDVWQLNLPSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWT 121

Query: 226 CKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL 268
           CK +K   +VS+F HL         L LL D +  + WSDF  LVVFL
Sbjct: 122 CKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169

[Close]

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.7e-31
Identity = 73/212 (34.43%), Postives = 109/212 (51.42%), Query Frame = 0


Query: 48   GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
            G  WR+G+  S+ V    WLP+  + +V   PSLP    V  L    G WD   + + F 
Sbjct: 1223 GYRWRVGNGESVRVLEDPWLPRPVTFKVYDQPSLPANLYVTDLKMADGQWDEGSIRSIFN 1282

Query: 108  PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSEVSLWW 167
            P +A LIL +P      +D+++WH+ K G +++     MA S  T+   S+ HS V  WW
Sbjct: 1283 PTDADLILGIPCSDWDFEDKILWHYSKNGEYSVKSGYRMAASLTTEQHQSNEHSIVQ-WW 1342

Query: 168  KGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLI-HVFWSCK 227
            K +W +N P ++K F W++  + LP    L +RG+      S C    E+ + H  W CK
Sbjct: 1343 KKLWRLNFPPKVKHFVWKVAHNWLPANVNLAKRGIASSVVCSRCSSHVEESVAHALWECK 1402

Query: 228  AAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQA 254
            A+K +WRVS  +      L  D LS+LM + A
Sbjct: 1403 ASKGYWRVSGLYDDLKLILGEDNLSMLMRIAA 1433

[Close]

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL
Match: M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.7e-31
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0


Query: 48  GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
           GL WR+GS  SI VY   WLP  S  ++ SPP LPL ++V  LFT SG W+   +   F 
Sbjct: 624 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 683

Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
            +E   IL +P+      D LIWH+E+ G++++ +       +       PS+     S 
Sbjct: 684 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 743

Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
           +WK +W + IP++IK F WR   D LP G  L  R +        C R  E ++H  W C
Sbjct: 744 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 803

Query: 228 KAAK------------RHWRVSQFHHLW 237
           +AAK              WRV+ F  LW
Sbjct: 804 EAAKEVWRNSAWGNVCEVWRVNSFRELW 831

[Close]

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL
Match: A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.7e-31
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0


Query: 48  GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
           GL WR+GS  SI VY   WLP  S  ++ SPP LPL ++V  LFT SG W+   +   F 
Sbjct: 587 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 646

Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
            +E   IL +P+      D LIWH+E+ G++++ +       +       PS+     S 
Sbjct: 647 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 706

Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
           +WK +W + IP++IK F WR   D LP G  L  R +        C R  E ++H  W C
Sbjct: 707 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 766

Query: 228 KAAK------------RHWRVSQFHHLW 237
           +AAK              WRV+ F  LW
Sbjct: 767 EAAKEVWRNSAWGNVCEVWRVNSFRELW 794

[Close]

BLAST of Lcy04g003580.1 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-46
Identity = 92/197 (46.70%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 48  GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFT-GSGSWDSTKVYANF 107
           GL WRIG+  S+ +YG NW+P   +L++ S P LPL S+V+SL     G W    V   F
Sbjct: 714 GLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQGDVVRDEF 773

Query: 108 EPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI--------MAQSCVTQSLPSSSHSEV 167
            P EA+ ILS+PIG    +D+LIW++EKTG++++        +   CV Q+  SSS  EV
Sbjct: 774 TPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QAPSSSSSEEV 833

Query: 168 SLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFW 227
             WW G W M+IP++IK+F WRLCLDRLPTG  L++RG++  +    CGR+GED IH+FW
Sbjct: 834 RCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFW 893

Query: 228 SCKAAKRHWRVSQFHHL 236
            CK A+  W  S+F  L
Sbjct: 894 ICKFAEALWINSKFGKL 909

[Close]

BLAST of Lcy04g003580.1 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 2   NQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDD 48
           N  LLKPF   E+++A HQIHP K+  P+  S AFYK  WH+VG D
Sbjct: 322 NCDLLKPFCEEEMIMALHQIHPHKALGPDRFSSAFYKNFWHIVGQD 367

HSP 2 Score: 155.6 bits (392), Expect = 6.0e-34
Identity = 76/168 (45.24%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 106 FEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSE-VS 165
           F   E + ILS+P+G   + D+LIW+FEK G+ T+     +A      +  S+S SE ++
Sbjct: 2   FTYDEVKTILSIPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLA 61

Query: 166 LWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWS 225
            WWK +W +N+PS+IK+FFWR CLDRLPTG+ L  RG+D    Y+ CG+ GED +H+FW+
Sbjct: 62  KWWKDVWQLNLPSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWT 121

Query: 226 CKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL 268
           CK +K   +VS+F HL         L LL D +  + WSDF  LVVFL
Sbjct: 122 CKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169

[Close]

BLAST of Lcy04g003580.1 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-30
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0


Query: 48  GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
           GL WR+GS  SI VY   WLP  S  ++ SPP LPL ++V  LFT SG W+   +   F 
Sbjct: 587 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 646

Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
            +E   IL +P+      D LIWH+E+ G++++ +       +       PS+     S 
Sbjct: 647 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 706

Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
           +WK +W + IP++IK F WR   D LP G  L  R +        C R  E ++H  W C
Sbjct: 707 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 766

Query: 228 KAAK------------RHWRVSQFHHLW 237
           +AAK              WRV+ F  LW
Sbjct: 767 EAAKEVWRNSAWGNVCEVWRVNSFRELW 794

[Close]

BLAST of Lcy04g003580.1 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 138.3 bits (347), Expect = 9.9e-29
Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 0


Query: 48   GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
            GL WR+G+  SI VY   WLP  S  ++ SPP LPL + V  LFT SG W+   +   F 
Sbjct: 853  GLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLPLSTLVCDLFTSSGQWNVPLLKDIFW 912

Query: 108  PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA---QSCVTQSL----PSSSHSEVSL 167
             +E    L +P+      D LIWH+E+ G++++ +    +C+ +      PS      S 
Sbjct: 913  DQEVDAKLQIPLASLAGHDCLIWHYERNGMYSVKSGYRLACLEKDKMSGEPSVRVDLNSK 972

Query: 168  WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
            +WK +W + IP++IK F WR   D LP G  L  R +        C R  E ++H  W C
Sbjct: 973  FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPNCHRKAESVLHAVWLC 1032

Query: 228  KAAK------------RHWRVSQFHHLW 237
            + AK              WRV+ F  LW
Sbjct: 1033 ETAKEVWRNSAWGNVCEEWRVNSFRELW 1060

[Close]

BLAST of Lcy04g003580.1 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 138.3 bits (347), Expect = 9.9e-29
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 0


Query: 48   GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
            G+ WR+GS  SI VY   WLP  S  ++ SPP LPL ++V  LFT SG W+   +   F 
Sbjct: 874  GVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 933

Query: 108  PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
             +E   IL +P+      D LIWH+E+ G++++ +       +       PS+     S 
Sbjct: 934  DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLARLEKDKMSGEPSARVDLNSK 993

Query: 168  WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
            +WK +W + IP++IK F WR   D LP G  L  R +        C R  E ++H  W C
Sbjct: 994  FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 1053

Query: 228  KAAKRHWRVSQFHHLWFP 239
            +AAK +  ++ F    FP
Sbjct: 1054 EAAKEN--INSFFFTNFP 1069

[Close]

BLAST of Lcy04g003580.1 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-13
Identity = 52/210 (24.76%), Postives = 91/210 (43.33%), Query Frame = 0


Query: 75  VRSPPSLPLYSK-------VNSLFTGSGS---WDSTKVYANFEPKEARLILSLPIGGDGS 134
           V S P  PL ++       +N+LF   GS   WD +K+    +  +   I  + +     
Sbjct: 56  VDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK 115

Query: 135 DDQLIWHFEKTGLFTIMAQSCVTQSLPSSS-------HSEVSLWWKGMWNMNIPSRIKIF 194
            D++IW++  TG +T+ +   +    PS++       H  + L  + +WN+ I  ++K F
Sbjct: 116 PDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR-IWNLPIMPKLKHF 175

Query: 195 FWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSCKAAKRHWRVSQFHHLWF 254
            WR     L T   L  RG+        C R  E + H  ++C  A   WR+S    +  
Sbjct: 176 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRN 235

Query: 255 PNLAPDF---LSLLMDLQACIGWSDFATLV 265
             ++ DF   +S +++       SDF  L+
Sbjct: 236 QLMSNDFEENISNILNFVQDTTMSDFHKLL 264

The following BLAST results are available for this feature:

BLAST of Lcy04g003580.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g003580.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAR4	1.9e-46	46.70	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DAR4	2.2e-05	54.35	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A803Q1K6	6.7e-31	34.43	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
M5W5F3	8.7e-31	35.10	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A251NPF0	8.7e-31	35.10	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]

BLAST of Lcy04g003580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150918.1	4.0e-46	46.70	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
XP_022150918.1	4.5e-05	54.35	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
ONI01138.1	1.8e-30	35.10	hypothetical protein PRUPE_6G123900 [Prunus persica]	[more]
VVA32947.1	9.9e-29	34.13	PREDICTED: retrotransposon [Prunus dulcis]	[more]
ONI09819.1	9.9e-29	34.85	hypothetical protein PRUPE_4G011200 [Prunus persica]	[more]

BLAST of Lcy04g003580.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	8.1e-13	24.76	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 153..227 e-value: 2.8E-15 score: 56.8
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 45..236
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 45..236

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lcy04g003580	Lcy04g003580	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g003580.1.exon1	Lcy04g003580.1.exon1	exon
Lcy04g003580.1.exon2	Lcy04g003580.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lcy04g003580.1.cds1	Lcy04g003580.1.cds1	CDS
Lcy04g003580.1.cds2	Lcy04g003580.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lcy04g003580.1	Lcy04g003580.1-protein	polypeptide