Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGTAATTCAGTGTTGTTTAAGGGTCTTAAATGACCGTGTTTCCTCTGCGCCTTTTAATGACACTATGATTGTTCTTATTCCAAAGACCCAACATCCTAAGCGTATTTCTGAATTTAGGCCAATATCTCTATGTAATGTGGTGTATAAGATTATTTCTAAGGCCATTGTAAATAGAATGAAAGGAATTTTAGATGCCATTATATCAGATAATCAAAGTGCGTTTATTCTTAACCGATGTGTGATTGATAATGCGATGTTGGGCTATGAATGTATCCATTCTCTGCAAGGTCGGCAATCTGGTAAAGCAGGATGGGTGGCCTTGAAGCTCGATATGAGTAAGGCCTATGATCATGTGGAGTGGAATTTTGTTGCTCCATGATGAGTCAGTTGGGATTTACACAAAGTTGGGTAGACCTTATTTCTCTGTGTATTTCGACAGTCAGTTATTCTTTTAATTTTATTGGTGAGCAGCTGGGTCATATAATCCCTCAACATGGTCTTCGCCAGGGAGATTCTCTATCTCCGTATCTTTTTTTGTTTTGTGCTGAGGGCCTTTCTTGCCTGCTTAAGCATGTTGTGCGTAGTGGGACTATCTCGGGTTTTGAAATTGCAAAAGGTGGGCCACGCATCTCTCACCTCTTTTTTAAAGCCAGATTCAATGAAGGTATCGTAATTCGGTCTATTCTTCATCAATATGAAGGGGCATCCAGTTAGACAATTAACTTTTAGAAATCTATTATTTCTTTTAGTCCTAACACGCCTTGGCCAGTCTAGGCTACAATGTAGGGAATTTTTGGTATACAGAGTGTGCAGTGCCATCAATGCTACCTTGGGCTACCTTCCTTTATGCCTCAGAATAGACGGACTACGATGGGTTTTATTAAAGACAGAGTTTGCGGCACATACAGGGTTGGTCTGGTGATCTTTTCTCAGTAAGGGGAAAAAATTCTCCTGATAGCAGTGATCCAGACGGTTCCTTGTTCTTCCATGAACTGTTTTTGCCTCCCGTTGAGTCTGATTCGTGAGCTTCAACAAATGATGGCACGATTCTGGTGGAATGGGGCTTCTAAGGATAAGAAGATTCACTAGGTGAGTTGGCATAATATGTGTTTGCCTAAATGCCTAGAGGGAATGGGTTTCCGTGACTTGGAATCCTTTAATCAGTCGTTGTTGGGCAAACAAGGGTGGAGGATTGTGTGTAGTCCATCCTCTTTATTGGATCGGGCTTTGCGGTCTCGATATTTCAAGAATAGCGATTTTTTATTAGCAAATTTGGGTTGGCGGCTATCTTTCATCTAGCGCAGCCTGTTATGGGGTCGGGAATTACTCAGGCAGGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG
mRNA sequence
ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG
Coding sequence (CDS)
ATGAATCAAGCCTTATTGAAGCCTTTTTCATCTGGTGAGGTTTTATTGGCTTTTCATCAAATACATCCAGGGAAGTCACCTAGGCCTAATGGCTTATCTGGGGCCTTTTATAAGAAACATTGGCATGTGGTTGGGGATGATGGGCTGCATTGGCGTATTGGTTCAAGTTCCTCCATTTGCGTATATGGTACCAATTGGTTACCACAGAGCTCTTCTCTCCGGGTTCGGTCTCCTCCCTCATTACCTTTATATAGCAAGGTGAATTCTCTTTTTACGGGATCTGGTTCCTGGGATTCTACCAAGGTCTATGCAAATTTTGAACCAAAGGAGGCTCGTTTAATCCTTTCGTTACCGATTGGTGGGGATGGTTCCGATGACCAGCTGATATGGCACTTCGAGAAAACTGGTCTTTTCACTATTATGGCTCAGTCTTGCGTGACTCAATCTCTTCCGTCGTCTTCGCATTCTGAGGTCTCCTTATGGTGGAAGGGCATGTGGAATATGAATATACCCAGCAGGATAAAGATTTTCTTTTGGCGTCTCTGTTTGGATAGATTACCGACTGGTTCTGCTCTCAATCGTAGGGGCCTGGACTGTCGTTCCTTTTACAGCACATGTGGTAGATCTGGGGAGGACTTAATCCATGTATTCTGGTCTTGCAAAGCTGCTAAGAGGCACTGGCGAGTTTCTCAGTTTCACCATCTATGGTTCCCAAACCTTGCTCCCGATTTTCTAAGTTTACTAATGGATTTGCAGGCATGTATAGGATGGTCTGACTTTGCTACTCTGGTGGTCTTCCTCTAG
Protein sequence
MNQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDDGLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMAQSCVTQSLPSSSHSEVSLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSCKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL
Homology
BLAST of Lcy04g003580 vs. ExPASy TrEMBL
Match:
A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 92/197 (46.70%), Postives = 126/197 (63.96%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFT-GSGSWDSTKVYANF 107
GL WRIG+ S+ +YG NW+P +L++ S P LPL S+V+SL G W V F
Sbjct: 714 GLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQGDVVRDEF 773
Query: 108 EPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI--------MAQSCVTQSLPSSSHSEV 167
P EA+ ILS+PIG +D+LIW++EKTG++++ + CV Q+ SSS EV
Sbjct: 774 TPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QAPSSSSSEEV 833
Query: 168 SLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFW 227
WW G W M+IP++IK+F WRLCLDRLPTG L++RG++ + CGR+GED IH+FW
Sbjct: 834 RCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFW 893
Query: 228 SCKAAKRHWRVSQFHHL 236
CK A+ W S+F L
Sbjct: 894 ICKFAEALWINSKFGKL 909
BLAST of Lcy04g003580 vs. ExPASy TrEMBL
Match:
A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 2.2e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0
Query: 2 NQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDD 48
N LLKPF E+++A HQIHP K+ P+ S AFYK WH+VG D
Sbjct: 322 NCDLLKPFCEEEMIMALHQIHPHKALGPDRFSSAFYKNFWHIVGQD 367
HSP 2 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 76/168 (45.24%), Postives = 106/168 (63.10%), Query Frame = 0
Query: 106 FEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSE-VS 165
F E + ILS+P+G + D+LIW+FEK G+ T+ +A + S+S SE ++
Sbjct: 2 FTYDEVKTILSIPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLA 61
Query: 166 LWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWS 225
WWK +W +N+PS+IK+FFWR CLDRLPTG+ L RG+D Y+ CG+ GED +H+FW+
Sbjct: 62 KWWKDVWQLNLPSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWT 121
Query: 226 CKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL 268
CK +K +VS+F HL L LL D + + WSDF LVVFL
Sbjct: 122 CKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169
BLAST of Lcy04g003580 vs. ExPASy TrEMBL
Match:
A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 6.7e-31
Identity = 73/212 (34.43%), Postives = 109/212 (51.42%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
G WR+G+ S+ V WLP+ + +V PSLP V L G WD + + F
Sbjct: 1223 GYRWRVGNGESVRVLEDPWLPRPVTFKVYDQPSLPANLYVTDLKMADGQWDEGSIRSIFN 1282
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSEVSLWW 167
P +A LIL +P +D+++WH+ K G +++ MA S T+ S+ HS V WW
Sbjct: 1283 PTDADLILGIPCSDWDFEDKILWHYSKNGEYSVKSGYRMAASLTTEQHQSNEHSIVQ-WW 1342
Query: 168 KGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLI-HVFWSCK 227
K +W +N P ++K F W++ + LP L +RG+ S C E+ + H W CK
Sbjct: 1343 KKLWRLNFPPKVKHFVWKVAHNWLPANVNLAKRGIASSVVCSRCSSHVEESVAHALWECK 1402
Query: 228 AAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQA 254
A+K +WRVS + L D LS+LM + A
Sbjct: 1403 ASKGYWRVSGLYDDLKLILGEDNLSMLMRIAA 1433
BLAST of Lcy04g003580 vs. ExPASy TrEMBL
Match:
M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 8.7e-31
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
GL WR+GS SI VY WLP S ++ SPP LPL ++V LFT SG W+ + F
Sbjct: 624 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 683
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
+E IL +P+ D LIWH+E+ G++++ + + PS+ S
Sbjct: 684 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 743
Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
+WK +W + IP++IK F WR D LP G L R + C R E ++H W C
Sbjct: 744 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 803
Query: 228 KAAK------------RHWRVSQFHHLW 237
+AAK WRV+ F LW
Sbjct: 804 EAAKEVWRNSAWGNVCEVWRVNSFRELW 831
BLAST of Lcy04g003580 vs. ExPASy TrEMBL
Match:
A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 8.7e-31
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
GL WR+GS SI VY WLP S ++ SPP LPL ++V LFT SG W+ + F
Sbjct: 587 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 646
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
+E IL +P+ D LIWH+E+ G++++ + + PS+ S
Sbjct: 647 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 706
Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
+WK +W + IP++IK F WR D LP G L R + C R E ++H W C
Sbjct: 707 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 766
Query: 228 KAAK------------RHWRVSQFHHLW 237
+AAK WRV+ F LW
Sbjct: 767 EAAKEVWRNSAWGNVCEVWRVNSFRELW 794
BLAST of Lcy04g003580 vs. NCBI nr
Match:
XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])
HSP 1 Score: 196.1 bits (497), Expect = 4.0e-46
Identity = 92/197 (46.70%), Postives = 126/197 (63.96%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFT-GSGSWDSTKVYANF 107
GL WRIG+ S+ +YG NW+P +L++ S P LPL S+V+SL G W V F
Sbjct: 714 GLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRLPLVSRVSSLVDHEEGGWQGDVVRDEF 773
Query: 108 EPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI--------MAQSCVTQSLPSSSHSEV 167
P EA+ ILS+PIG +D+LIW++EKTG++++ + CV Q+ SSS EV
Sbjct: 774 TPDEAKGILSIPIGRGAEEDRLIWNYEKTGVYSVRSGYKVALLNNPCV-QAPSSSSSEEV 833
Query: 168 SLWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFW 227
WW G W M+IP++IK+F WRLCLDRLPTG L++RG++ + CGR+GED IH+FW
Sbjct: 834 RCWWNGFWKMHIPNKIKVFLWRLCLDRLPTGCNLSKRGVEITNCCYFCGRNGEDSIHLFW 893
Query: 228 SCKAAKRHWRVSQFHHL 236
CK A+ W S+F L
Sbjct: 894 ICKFAEALWINSKFGKL 909
BLAST of Lcy04g003580 vs. NCBI nr
Match:
XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])
HSP 1 Score: 59.7 bits (143), Expect = 4.5e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0
Query: 2 NQALLKPFSSGEVLLAFHQIHPGKSPRPNGLSGAFYKKHWHVVGDD 48
N LLKPF E+++A HQIHP K+ P+ S AFYK WH+VG D
Sbjct: 322 NCDLLKPFCEEEMIMALHQIHPHKALGPDRFSSAFYKNFWHIVGQD 367
HSP 2 Score: 155.6 bits (392), Expect = 6.0e-34
Identity = 76/168 (45.24%), Postives = 106/168 (63.10%), Query Frame = 0
Query: 106 FEPKEARLILSLPIGGDGSDDQLIWHFEKTGLFTI-----MAQSCVTQSLPSSSHSE-VS 165
F E + ILS+P+G + D+LIW+FEK G+ T+ +A + S+S SE ++
Sbjct: 2 FTYDEVKTILSIPLGIGLAADRLIWNFEKNGICTVKSDYKLAHMQSPDTSASTSLSECLA 61
Query: 166 LWWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWS 225
WWK +W +N+PS+IK+FFWR CLDRLPTG+ L RG+D Y+ CG+ GED +H+FW+
Sbjct: 62 KWWKDVWQLNLPSKIKVFFWRPCLDRLPTGANLILRGVDVPDCYAFCGKKGEDALHLFWT 121
Query: 226 CKAAKRHWRVSQFHHLWFPNLAPDFLSLLMDLQACIGWSDFATLVVFL 268
CK +K +VS+F HL L LL D + + WSDF LVVFL
Sbjct: 122 CKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169
BLAST of Lcy04g003580 vs. NCBI nr
Match:
ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])
HSP 1 Score: 144.1 bits (362), Expect = 1.8e-30
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
GL WR+GS SI VY WLP S ++ SPP LPL ++V LFT SG W+ + F
Sbjct: 587 GLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 646
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
+E IL +P+ D LIWH+E+ G++++ + + PS+ S
Sbjct: 647 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLAGLEKDKMSGEPSARVDLNSK 706
Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
+WK +W + IP++IK F WR D LP G L R + C R E ++H W C
Sbjct: 707 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 766
Query: 228 KAAK------------RHWRVSQFHHLW 237
+AAK WRV+ F LW
Sbjct: 767 EAAKEVWRNSAWGNVCEVWRVNSFRELW 794
BLAST of Lcy04g003580 vs. NCBI nr
Match:
VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])
HSP 1 Score: 138.3 bits (347), Expect = 9.9e-29
Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
GL WR+G+ SI VY WLP S ++ SPP LPL + V LFT SG W+ + F
Sbjct: 853 GLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLPLSTLVCDLFTSSGQWNVPLLKDIFW 912
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA---QSCVTQSL----PSSSHSEVSL 167
+E L +P+ D LIWH+E+ G++++ + +C+ + PS S
Sbjct: 913 DQEVDAKLQIPLASLAGHDCLIWHYERNGMYSVKSGYRLACLEKDKMSGEPSVRVDLNSK 972
Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
+WK +W + IP++IK F WR D LP G L R + C R E ++H W C
Sbjct: 973 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPNCHRKAESVLHAVWLC 1032
Query: 228 KAAK------------RHWRVSQFHHLW 237
+ AK WRV+ F LW
Sbjct: 1033 ETAKEVWRNSAWGNVCEEWRVNSFRELW 1060
BLAST of Lcy04g003580 vs. NCBI nr
Match:
ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])
HSP 1 Score: 138.3 bits (347), Expect = 9.9e-29
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 0
Query: 48 GLHWRIGSSSSICVYGTNWLPQSSSLRVRSPPSLPLYSKVNSLFTGSGSWDSTKVYANFE 107
G+ WR+GS SI VY WLP S ++ SPP LPL ++V LFT SG W+ + F
Sbjct: 874 GVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLPLSTRVCDLFTSSGQWNVPLLKDIFW 933
Query: 108 PKEARLILSLPIGGDGSDDQLIWHFEKTGLFTIMA-------QSCVTQSLPSSSHSEVSL 167
+E IL +P+ D LIWH+E+ G++++ + + PS+ S
Sbjct: 934 DQEVDAILQIPLASLAGHDCLIWHYERNGMYSVKSGYRLARLEKDKMSGEPSARVDLNSK 993
Query: 168 WWKGMWNMNIPSRIKIFFWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSC 227
+WK +W + IP++IK F WR D LP G L R + C R E ++H W C
Sbjct: 994 FWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRKAESVLHAVWLC 1053
Query: 228 KAAKRHWRVSQFHHLWFP 239
+AAK + ++ F FP
Sbjct: 1054 EAAKEN--INSFFFTNFP 1069
BLAST of Lcy04g003580 vs. TAIR 10
Match:
AT3G09510.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 72.0 bits (175), Expect = 8.1e-13
Identity = 52/210 (24.76%), Postives = 91/210 (43.33%), Query Frame = 0
Query: 75 VRSPPSLPLYSK-------VNSLFTGSGS---WDSTKVYANFEPKEARLILSLPIGGDGS 134
V S P PL ++ +N+LF GS WD +K+ + + I + +
Sbjct: 56 VDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKK 115
Query: 135 DDQLIWHFEKTGLFTIMAQSCVTQSLPSSS-------HSEVSLWWKGMWNMNIPSRIKIF 194
D++IW++ TG +T+ + + PS++ H + L + +WN+ I ++K F
Sbjct: 116 PDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTR-IWNLPIMPKLKHF 175
Query: 195 FWRLCLDRLPTGSALNRRGLDCRSFYSTCGRSGEDLIHVFWSCKAAKRHWRVSQFHHLWF 254
WR L T L RG+ C R E + H ++C A WR+S +
Sbjct: 176 LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRN 235
Query: 255 PNLAPDF---LSLLMDLQACIGWSDFATLV 265
++ DF +S +++ SDF L+
Sbjct: 236 QLMSNDFEENISNILNFVQDTTMSDFHKLL 264
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DAR4 | 1.9e-46 | 46.70 | uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A6J1DAR4 | 2.2e-05 | 54.35 | uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A803Q1K6 | 6.7e-31 | 34.43 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
M5W5F3 | 8.7e-31 | 35.10 | Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... | [more] |
A0A251NPF0 | 8.7e-31 | 35.10 | Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU... | [more] |
Match Name | E-value | Identity | Description | |
XP_022150918.1 | 4.0e-46 | 46.70 | uncharacterized protein LOC111018954 [Momordica charantia] | [more] |
XP_022150918.1 | 4.5e-05 | 54.35 | uncharacterized protein LOC111018954 [Momordica charantia] | [more] |
ONI01138.1 | 1.8e-30 | 35.10 | hypothetical protein PRUPE_6G123900 [Prunus persica] | [more] |
VVA32947.1 | 9.9e-29 | 34.13 | PREDICTED: retrotransposon [Prunus dulcis] | [more] |
ONI09819.1 | 9.9e-29 | 34.85 | hypothetical protein PRUPE_4G011200 [Prunus persica] | [more] |
Match Name | E-value | Identity | Description | |
AT3G09510.1 | 8.1e-13 | 24.76 | Ribonuclease H-like superfamily protein | [more] |