Lcy03g004710.1 (mRNA) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA MAEEKWVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEKPYGPWLRENFVERKGNKKEKEPGSSNRTEKSKEDEGKSKYSEATSEKIKRENGGNRSPVESQSPEAHPRQSTEREEKDRELSMLKSEVARVSGKLAVGMGEGQSFTEKEAMKTVAGNRGISSDLTNEKKEMWDPTNGKSKNMDQSKDKSIVTDETKIAQNQGEICKDKGQQSEKIKGKNSPKNSKAKKWKRLARCEPMQQDGLEGKAEIENGGKSTGWRWKLMRMNTKN Homology
BLAST of Lcy03g004710.1 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 8.1e-08 Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. ExPASy TrEMBL
Match: A0A5C7IKP2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004107 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.9e-05 Identity = 52/170 (30.59%), Postives = 85/170 (50.00%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. ExPASy TrEMBL
Match: A0A5E4G034 (PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04 Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 67.8 bits (164), Expect = 1.7e-07 Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. NCBI nr
Match: XP_042944586.1 (uncharacterized protein LOC122278462 [Carya illinoinensis]) HSP 1 Score: 60.5 bits (145), Expect = 2.7e-05 Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. NCBI nr
Match: TXG69172.1 (hypothetical protein EZV62_004107 [Acer yangbiense]) HSP 1 Score: 58.5 bits (140), Expect = 1.0e-04 Identity = 52/170 (30.59%), Postives = 85/170 (50.00%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. NCBI nr
Match: CAB4316812.1 (unnamed protein product [Prunus armeniaca]) HSP 1 Score: 58.5 bits (140), Expect = 1.0e-04 Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0
BLAST of Lcy03g004710.1 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia]) HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04 Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|