Lcy03g004710 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g004710
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 23933046 .. 23933864 (-)
RNA-Seq ExpressionLcy03g004710
SyntenyLcy03g004710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA

mRNA sequence

ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA

Coding sequence (CDS)

ATGGCTGAAGAGAAATGGGTCCCAATAACCATTGAAAAAATTCCAGAATTTTGTTACCAGTGCGGAAGATTGGGGCATGTTATGAAGGAGTGCGAAGACGATGAAAGTGATAAAGAGGAGGACGAAAAACCATACGGGCCATGGCTAAGAGAGAACTTCGTTGAGAGAAAAGGGAATAAGAAAGAGAAAGAACCTGGGAGCAGTAATAGAACAGAGAAGAGCAAGGAAGATGAAGGAAAAAGTAAGTACAGTGAAGCAACGTCGGAAAAAATCAAAAGGGAGAACGGTGGAAACAGGTCACCGGTGGAGTCCCAGTCGCCGGAAGCTCATCCCAGACAGTCTACGGAAAGAGAGGAAAAGGACAGAGAACTTTCAATGTTGAAGTCAGAGGTAGCAAGGGTGTCAGGTAAACTAGCCGTTGGAATGGGAGAAGGACAAAGTTTCACAGAAAAGGAAGCTATGAAGACGGTGGCTGGAAATAGAGGGATAAGCAGTGACTTGACTAATGAAAAGAAGGAGATGTGGGACCCAACGAATGGAAAAAGTAAGAATATGGATCAGAGTAAGGACAAAAGCATAGTTACAGATGAAACAAAAATAGCCCAAAATCAAGGAGAGATCTGTAAAGATAAAGGACAGCAATCTGAGAAAATAAAAGGGAAGAATAGCCCAAAAAATAGCAAGGCAAAAAAGTGGAAAAGATTGGCTAGATGTGAACCAATGCAACAGGATGGGCTGGAAGGAAAGGCTGAAATAGAAAATGGTGGAAAAAGCACGGGTTGGAGATGGAAGCTAATGAGAATGAATACAAAAAACTGA

Protein sequence

MAEEKWVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEKPYGPWLRENFVERKGNKKEKEPGSSNRTEKSKEDEGKSKYSEATSEKIKRENGGNRSPVESQSPEAHPRQSTEREEKDRELSMLKSEVARVSGKLAVGMGEGQSFTEKEAMKTVAGNRGISSDLTNEKKEMWDPTNGKSKNMDQSKDKSIVTDETKIAQNQGEICKDKGQQSEKIKGKNSPKNSKAKKWKRLARCEPMQQDGLEGKAEIENGGKSTGWRWKLMRMNTKN
Homology
BLAST of Lcy03g004710 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.1e-08
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MAEEKWVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEKPYGPWLRENFVERKGNK 60
           MA+EKW+P++ EK+P+FCY+CGR+GHV++EC++   D EE ++ +G WLR++   +  +K
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQR-FGVWLRKSQTSQSISK 108

Query: 61  KEKEPGSSNRTEKSKEDEGK 81
             +E   S  T      EGK
Sbjct: 109 GRREEVRSQFTIDRGRGEGK 127

BLAST of Lcy03g004710 vs. ExPASy TrEMBL
Match: A0A5C7IKP2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_004107 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-05
Identity = 52/170 (30.59%), Postives = 85/170 (50.00%), Query Frame = 0

Query: 7   VPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEK---PYGPWLRENFVERKGNKKEK 66
           VP+T E++PEFCY CGR+GH ++EC DD++  E  E     +G W+R    ER    ++K
Sbjct: 197 VPLTYERLPEFCYACGRIGHGLRECTDDKARTEALEGSSIKFGSWMRAAVGERSRTNQQK 256

Query: 67  EPGSSNRTEKSKEDEGKSKYSEATSEKIKRENGGNRSPVESQSPEAHPRQSTEREE---K 126
             G    T  S+  E KS ++ A S K   E GG++S        ++P + T+RE     
Sbjct: 257 HGG----TNSSRSGENKSSFNYAESNK---EVGGSKS-------TSNPIKLTDRESGGVS 316

Query: 127 DRELSMLKSEVARVSGKLAVGMGEGQSFTEKEAMKTVAGNRGISSDLTNE 171
           D  +   + E+  + G L   + E ++    + ++   G+     DL N+
Sbjct: 317 DERVIHNRGEIIPLEGNLIEAIQEDRN----QVVEHGQGSEDFLEDLANQ 348

BLAST of Lcy03g004710 vs. ExPASy TrEMBL
Match: A0A5E4G034 (PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 6   WVPITIEKIPEFCYQCGRLGHVMKECE-DDESDKEEDEKPYGPWLR--ENFVERKGNKKE 65
           +V    E++PEFC+ CGRLGHV KEC   D++ K+ DEKPYG WL+  ++F   +    +
Sbjct: 196 FVEFRYERLPEFCFCCGRLGHVFKECSFVDQAAKQADEKPYGSWLKATKDFHSIRAGNPK 255

Query: 66  KEPGSSNRTE----KSKEDEGKSKYSEATSEKIKRENGGNRSPVESQSPEAHPRQS 115
           +  GS +  E    K KE E + + S ++ EK+   + G  S          PR++
Sbjct: 256 RTNGSGSEAEGDGAKEKEMEVEGQQSNSSGEKVAESSLGLLSKQRVGERRQPPREA 311

BLAST of Lcy03g004710 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-07
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1   MAEEKWVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEKPYGPWLRENFVERKGNK 60
           MA+EKW+P++ EK+P+FCY+CGR+GHV++EC++   D EE ++ +G WLR++   +  +K
Sbjct: 49  MAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQR-FGVWLRKSQTSQSISK 108

Query: 61  KEKEPGSSNRTEKSKEDEGK 81
             +E   S  T      EGK
Sbjct: 109 GRREEVRSQFTIDRGRGEGK 127

BLAST of Lcy03g004710 vs. NCBI nr
Match: XP_042944586.1 (uncharacterized protein LOC122278462 [Carya illinoinensis])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-05
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0

Query: 6   WVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEK-PYGPWLRENFVERK 58
           WV  + E++P+ C+ CG LGH +KECED ++++ + ++ PYGPWLR  F+  +
Sbjct: 173 WVRFSYERLPDLCFHCGILGHSLKECEDIDANQVDSQRLPYGPWLRVGFLSSR 225

BLAST of Lcy03g004710 vs. NCBI nr
Match: TXG69172.1 (hypothetical protein EZV62_004107 [Acer yangbiense])

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-04
Identity = 52/170 (30.59%), Postives = 85/170 (50.00%), Query Frame = 0

Query: 7   VPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEK---PYGPWLRENFVERKGNKKEK 66
           VP+T E++PEFCY CGR+GH ++EC DD++  E  E     +G W+R    ER    ++K
Sbjct: 197 VPLTYERLPEFCYACGRIGHGLRECTDDKARTEALEGSSIKFGSWMRAAVGERSRTNQQK 256

Query: 67  EPGSSNRTEKSKEDEGKSKYSEATSEKIKRENGGNRSPVESQSPEAHPRQSTEREE---K 126
             G    T  S+  E KS ++ A S K   E GG++S        ++P + T+RE     
Sbjct: 257 HGG----TNSSRSGENKSSFNYAESNK---EVGGSKS-------TSNPIKLTDRESGGVS 316

Query: 127 DRELSMLKSEVARVSGKLAVGMGEGQSFTEKEAMKTVAGNRGISSDLTNE 171
           D  +   + E+  + G L   + E ++    + ++   G+     DL N+
Sbjct: 317 DERVIHNRGEIIPLEGNLIEAIQEDRN----QVVEHGQGSEDFLEDLANQ 348

BLAST of Lcy03g004710 vs. NCBI nr
Match: CAB4316812.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0

Query: 4   EKWVPITIEKIPEFCYQCGRLGHVMKECE-DDESDKEEDEKPYGPWLRENFVERKG 59
           E  +    E++P+FCY CGR+GHV+KEC+     +KE  EKPYG WL   F   +G
Sbjct: 57  EAVIEFKYERLPDFCYACGRIGHVVKECKVVGAIEKEAKEKPYGSWLHSKFEVGRG 112

BLAST of Lcy03g004710 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-04
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 6   WVPITIEKIPEFCYQCGRLGHVMKECEDDESDKEEDEKPYGPWLR 51
           W+PI  E++P+F Y CGRL H++K+C D   D       YGPWLR
Sbjct: 200 WIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0K28.1e-0842.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68... [more]
A0A5C7IKP24.9e-0530.59CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00410... [more]
A0A5E4G0343.2e-0435.34PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569... [more]
Match NameE-valueIdentityDescription
KAA0046998.11.7e-0742.50reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta... [more]
XP_042944586.12.7e-0543.40uncharacterized protein LOC122278462 [Carya illinoinensis][more]
TXG69172.11.0e-0430.59hypothetical protein EZV62_004107 [Acer yangbiense][more]
CAB4316812.11.0e-0446.43unnamed protein product [Prunus armeniaca][more]
XP_022132681.11.3e-0448.89uncharacterized protein LOC111005481 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 3..32
e-value: 3.2E-7
score: 29.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..234
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 18..33
score: 10.081271

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g004710.1Lcy03g004710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding